Wall clock time and date at job start Tue Mar 31 2020 11:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99519 * 2 1 4 4 H 1.48498 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47145 * 299.99405 * 3 2 1 6 6 H 1.48497 * 109.47388 * 59.99412 * 3 2 1 7 7 C 1.37877 * 120.00697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47421 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.76198 * 103.00437 * 180.02562 * 12 11 10 14 14 N 1.31395 * 125.37414 * 359.97363 * 13 12 11 15 15 N 1.40424 * 107.04749 * 180.02562 * 14 13 12 16 16 H 0.97000 * 126.87222 * 180.02562 * 15 14 13 17 17 C 1.36054 * 106.26390 * 0.02562 * 15 14 13 18 18 C 1.46763 * 126.13320 * 179.97438 * 17 15 14 19 19 C 1.34570 * 119.99454 * 180.02562 * 18 17 15 20 20 C 1.47296 * 119.99382 * 180.02562 * 19 18 17 21 21 C 1.39787 * 120.16935 * 359.97265 * 20 19 18 22 22 C 1.37901 * 119.83403 * 180.02562 * 21 20 19 23 23 C 1.38395 * 120.16390 * 359.97438 * 22 21 20 24 24 C 1.38386 * 120.33675 * 0.02562 * 23 22 21 25 25 C 1.37904 * 120.16616 * 0.02562 * 24 23 22 26 26 N 1.32195 * 107.73405 * 0.22325 * 17 15 14 27 27 H 0.96998 * 120.00377 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46984 * 59.99956 * 9 7 2 29 29 H 1.08995 * 109.47172 * 299.99770 * 9 7 2 30 30 H 1.09013 * 109.46794 * 59.99783 * 10 9 7 31 31 H 1.08998 * 109.47138 * 300.00758 * 10 9 7 32 32 H 1.08997 * 109.46994 * 60.00325 * 11 10 9 33 33 H 1.08995 * 109.47143 * 300.00528 * 11 10 9 34 34 H 1.07991 * 120.00336 * 359.97438 * 18 17 15 35 35 H 1.07991 * 120.00211 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.08300 * 0.04576 * 21 20 19 37 37 H 1.07997 * 119.92045 * 180.25309 * 22 21 20 38 38 H 1.08000 * 119.82738 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.91915 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.08414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4807 -4.9870 0.0012 12 16 2.6595 -6.3658 0.0019 13 6 1.6123 -7.7828 0.0019 14 7 0.2986 -7.7578 0.0018 15 7 -0.1385 -9.0922 0.0024 16 1 -1.0571 -9.4038 0.0021 17 6 0.9840 -9.8609 0.0033 18 6 1.0284 -11.3279 0.0046 19 6 2.2136 -11.9651 0.0059 20 6 2.2581 -13.4374 0.0067 21 6 1.0714 -14.1761 0.0066 22 6 1.1211 -15.5542 0.0079 23 6 2.3419 -16.2060 0.0087 24 6 3.5210 -15.4816 0.0087 25 6 3.4874 -14.1030 0.0085 26 7 2.0277 -9.0495 0.0082 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 2.8722 -3.6041 0.8906 31 1 2.8722 -3.6042 -0.8894 32 1 0.8538 -5.0451 -0.8886 33 1 0.8543 -5.0445 0.8913 34 1 0.1099 -11.8959 0.0054 35 1 3.1321 -11.3971 0.0056 36 1 0.1179 -13.6688 0.0053 37 1 0.2051 -16.1263 0.0037 38 1 2.3745 -17.2855 0.0101 39 1 4.4701 -15.9972 0.0089 40 1 4.4084 -13.5389 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345077924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:40 Heat of formation + Delta-G solvation = 104.263271 kcal Electronic energy + Delta-G solvation = -20757.819601 eV Core-core repulsion = 17471.945082 eV Total energy + Delta-G solvation = -3285.874519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93275 -39.63918 -35.22170 -34.48560 -32.65205 -32.07800 -31.75874 -31.44895 -29.17451 -27.45568 -24.66325 -23.59814 -23.27268 -22.79605 -21.81153 -20.28220 -19.62675 -18.42524 -17.34397 -16.54443 -16.15070 -15.84629 -15.71817 -15.53738 -14.82598 -14.54863 -14.53100 -14.04276 -13.87526 -13.71157 -13.46677 -12.57200 -12.49260 -12.25865 -11.92478 -11.80959 -11.68377 -11.40352 -11.37710 -11.06399 -10.90605 -10.63622 -10.57102 -10.41904 -9.99497 -9.95215 -9.79905 -9.44547 -9.34614 -9.09762 -8.50364 -8.36166 -7.51095 -6.00754 -4.03461 0.04813 0.92821 1.27115 1.33711 2.09143 2.28966 2.80244 2.89424 3.32154 3.39636 3.44235 3.44621 3.94808 4.17309 4.35795 4.46351 4.47997 4.62883 4.72270 4.87697 4.93979 5.04478 5.35306 5.43867 5.49480 5.51246 5.59737 5.65468 5.71592 5.88281 5.98679 6.02514 6.11281 6.12873 6.19851 6.47085 6.51180 6.67745 6.84606 6.99106 7.64835 7.75950 7.76882 7.98106 8.38908 9.03220 9.60813 11.10530 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.001653 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.228836 B =16934.472382 C =17445.952004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.096 4.096 11 C -0.099 4.099 12 S 0.000 6.000 13 C 0.217 3.783 14 N -0.309 5.309 15 N -0.479 5.479 16 H 0.441 0.559 17 C 0.319 3.681 18 C -0.114 4.114 19 C -0.030 4.030 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.095 4.095 26 N -0.510 5.510 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -34.171 0.000 34.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.136 4.136 11 C -0.248 4.248 12 S 0.228 5.772 13 C -0.172 4.172 14 N -0.143 5.143 15 N -0.199 5.199 16 H 0.287 0.713 17 C 0.044 3.956 18 C -0.134 4.134 19 C -0.053 4.053 20 C -0.069 4.069 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.113 4.113 26 N -0.240 5.240 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.820 -33.380 0.008 33.499 hybrid contribution -1.817 0.375 -0.003 1.855 sum 1.003 -33.004 0.005 33.020 Atomic orbital electron populations 1.69976 1.06078 1.26561 1.50802 1.25022 0.94854 0.99311 0.95249 0.86515 0.80161 0.83655 0.77557 1.19637 1.21016 1.21022 1.21257 0.93196 0.90774 1.50680 0.92375 1.19100 0.93734 0.90538 0.97675 1.21518 0.99386 0.90849 1.01826 1.23965 1.00028 0.94666 1.06130 1.85693 1.08961 0.90606 1.91904 1.26194 0.92591 0.97812 1.00645 1.78505 1.11456 0.95566 1.28755 1.48116 1.09521 1.04195 1.58032 0.71329 1.22647 0.82685 0.93803 0.96514 1.20851 0.99504 0.86087 1.06976 1.22311 0.98725 0.91953 0.92348 1.19006 0.93649 0.92371 1.01914 1.21407 0.97679 0.94181 0.99126 1.21111 0.98125 0.94365 1.00412 1.21324 0.92577 1.00139 0.99019 1.21149 0.98544 0.94036 1.00252 1.21424 0.97251 0.94576 0.98055 1.70859 1.28774 0.98981 1.25396 0.93024 0.96232 0.96224 0.92049 0.92038 0.89437 0.89444 0.84279 0.84071 0.85606 0.85754 0.85910 0.85629 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 10 C -0.10 -1.98 5.16 -26.74 -0.14 -2.12 16 11 C -0.10 -1.80 5.54 37.15 0.21 -1.59 16 12 S 0.00 0.00 22.16 -107.50 -2.38 -2.39 16 13 C 0.22 3.65 8.25 -91.18 -0.75 2.90 16 14 N -0.31 -5.01 12.33 30.09 0.37 -4.64 16 15 N -0.48 -5.68 7.52 32.18 0.24 -5.44 16 16 H 0.44 3.39 8.96 -182.35 -1.63 1.75 16 17 C 0.32 3.82 7.96 -154.89 -1.23 2.58 16 18 C -0.11 -0.91 9.59 -37.44 -0.36 -1.26 16 19 C -0.03 -0.24 9.54 -37.20 -0.35 -0.59 16 20 C -0.07 -0.49 5.87 -105.06 -0.62 -1.10 16 21 C -0.11 -0.63 9.41 -39.13 -0.37 -1.00 16 22 C -0.12 -0.66 10.03 -39.65 -0.40 -1.05 16 23 C -0.11 -0.59 10.04 -39.47 -0.40 -0.99 16 24 C -0.12 -0.68 10.03 -39.65 -0.40 -1.08 16 25 C -0.09 -0.61 9.79 -39.13 -0.38 -1.00 16 26 N -0.51 -7.80 10.76 -11.56 -0.12 -7.92 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.14 0.66 6.07 -52.49 -0.32 0.34 16 35 H 0.14 1.24 7.72 -52.49 -0.41 0.83 16 36 H 0.13 0.51 6.17 -52.48 -0.32 0.19 16 37 H 0.12 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -33.85 363.74 -12.89 -46.74 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.45 Total: -3.11 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -5.74 Total: -19.20 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 1.22 Total: -44.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.38 Total: -2.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.85 -12.89 -46.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345077924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.003 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds