Wall clock time and date at job start Tue Mar 31 2020 11:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99519 * 2 1 4 4 H 1.48498 * 109.47332 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47145 * 299.99405 * 3 2 1 6 6 H 1.48497 * 109.47388 * 59.99412 * 3 2 1 7 7 C 1.37877 * 120.00697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47421 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.76198 * 103.00437 * 180.02562 * 12 11 10 14 14 N 1.31395 * 125.37414 * 359.97363 * 13 12 11 15 15 N 1.40424 * 107.04749 * 180.02562 * 14 13 12 16 16 H 0.97000 * 126.87222 * 180.02562 * 15 14 13 17 17 C 1.36054 * 106.26390 * 0.02562 * 15 14 13 18 18 C 1.46763 * 126.13320 * 179.97438 * 17 15 14 19 19 C 1.34570 * 119.99454 * 180.02562 * 18 17 15 20 20 C 1.47296 * 119.99382 * 180.02562 * 19 18 17 21 21 C 1.39787 * 120.16935 * 359.97265 * 20 19 18 22 22 C 1.37901 * 119.83403 * 180.02562 * 21 20 19 23 23 C 1.38395 * 120.16390 * 359.97438 * 22 21 20 24 24 C 1.38386 * 120.33675 * 0.02562 * 23 22 21 25 25 C 1.37904 * 120.16616 * 0.02562 * 24 23 22 26 26 N 1.32195 * 107.73405 * 0.22325 * 17 15 14 27 27 H 0.96998 * 120.00377 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46984 * 59.99956 * 9 7 2 29 29 H 1.08995 * 109.47172 * 299.99770 * 9 7 2 30 30 H 1.09013 * 109.46794 * 59.99783 * 10 9 7 31 31 H 1.08998 * 109.47138 * 300.00758 * 10 9 7 32 32 H 1.08997 * 109.46994 * 60.00325 * 11 10 9 33 33 H 1.08995 * 109.47143 * 300.00528 * 11 10 9 34 34 H 1.07991 * 120.00336 * 359.97438 * 18 17 15 35 35 H 1.07991 * 120.00211 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.08300 * 0.04576 * 21 20 19 37 37 H 1.07997 * 119.92045 * 180.25309 * 22 21 20 38 38 H 1.08000 * 119.82738 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.91915 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.08414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4807 -4.9870 0.0012 12 16 2.6595 -6.3658 0.0019 13 6 1.6123 -7.7828 0.0019 14 7 0.2986 -7.7578 0.0018 15 7 -0.1385 -9.0922 0.0024 16 1 -1.0571 -9.4038 0.0021 17 6 0.9840 -9.8609 0.0033 18 6 1.0284 -11.3279 0.0046 19 6 2.2136 -11.9651 0.0059 20 6 2.2581 -13.4374 0.0067 21 6 1.0714 -14.1761 0.0066 22 6 1.1211 -15.5542 0.0079 23 6 2.3419 -16.2060 0.0087 24 6 3.5210 -15.4816 0.0087 25 6 3.4874 -14.1030 0.0085 26 7 2.0277 -9.0495 0.0082 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 2.8722 -3.6041 0.8906 31 1 2.8722 -3.6042 -0.8894 32 1 0.8538 -5.0451 -0.8886 33 1 0.8543 -5.0445 0.8913 34 1 0.1099 -11.8959 0.0054 35 1 3.1321 -11.3971 0.0056 36 1 0.1179 -13.6688 0.0053 37 1 0.2051 -16.1263 0.0037 38 1 2.3745 -17.2855 0.0101 39 1 4.4701 -15.9972 0.0089 40 1 4.4084 -13.5389 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345077924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:39 Heat of formation + Delta-G solvation = 86.617014 kcal Electronic energy + Delta-G solvation = -20758.584800 eV Core-core repulsion = 17471.945082 eV Total energy + Delta-G solvation = -3286.639718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.99618 -40.06416 -36.39868 -35.85606 -34.08438 -33.70596 -32.61595 -31.85982 -29.94023 -29.35210 -25.58125 -25.17647 -24.32691 -23.49508 -22.55069 -22.01076 -20.37078 -19.36875 -18.51818 -17.83397 -17.46973 -16.84012 -16.65198 -16.49286 -16.16981 -16.01754 -15.54462 -15.03449 -14.56096 -14.48053 -14.22304 -13.92928 -13.71604 -13.71025 -13.29066 -13.05175 -12.87580 -12.79582 -12.37712 -12.25837 -12.12416 -11.86883 -11.80797 -11.72723 -11.61347 -11.40442 -11.22910 -11.07045 -10.75580 -10.55810 -9.85034 -9.13476 -8.77712 -8.19749 -6.30851 -0.58655 0.05029 0.46979 0.52480 1.04634 1.21184 1.42179 1.42470 1.56182 1.75667 2.00441 2.42513 2.99827 3.14084 3.14812 3.44490 3.87547 3.96253 3.99271 4.06191 4.11856 4.23195 4.35305 4.52017 4.55209 4.57928 4.73343 4.78274 4.92541 4.94693 5.02996 5.08257 5.13244 5.20049 5.31158 5.50203 5.58028 5.62948 5.67474 5.69021 5.82948 6.04064 6.08149 6.22157 6.70974 6.85323 7.38514 8.92347 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.001653 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.228836 B =16934.472382 C =17445.952004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.031 3.969 10 C -0.082 4.082 11 C -0.091 4.091 12 S 0.015 5.985 13 C 0.200 3.800 14 N -0.340 5.340 15 N -0.467 5.467 16 H 0.459 0.541 17 C 0.332 3.668 18 C -0.122 4.122 19 C -0.016 4.016 20 C -0.089 4.089 21 C -0.109 4.109 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.107 4.107 26 N -0.539 5.539 27 H 0.263 0.737 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -36.277 0.000 36.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.121 4.121 11 C -0.240 4.240 12 S 0.243 5.757 13 C -0.191 4.191 14 N -0.174 5.174 15 N -0.188 5.188 16 H 0.308 0.692 17 C 0.057 3.943 18 C -0.143 4.143 19 C -0.040 4.040 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.126 4.126 26 N -0.270 5.270 27 H 0.072 0.928 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.193 0.807 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.240 -35.506 0.007 35.653 hybrid contribution -1.961 0.748 -0.003 2.099 sum 1.279 -34.757 0.004 34.781 Atomic orbital electron populations 1.70107 1.07828 1.27733 1.51692 1.25979 0.95759 1.03387 0.94673 0.85374 0.79169 0.78648 0.77708 1.18416 1.20429 1.20442 1.21705 0.93772 0.92031 1.50540 0.91739 1.18975 0.94165 0.92293 0.95384 1.21225 0.98224 0.90326 1.02364 1.23636 1.00033 0.94712 1.05654 1.85438 1.07835 0.90069 1.92312 1.26123 0.92876 0.98273 1.01785 1.78389 1.11363 0.98079 1.29596 1.47997 1.10614 1.02799 1.57420 0.69171 1.23235 0.81809 0.95027 0.94217 1.21094 1.01082 0.83841 1.08244 1.22335 0.98283 0.92673 0.90675 1.19033 0.94512 0.91697 1.03641 1.21686 0.98018 0.94673 0.98322 1.21441 0.99099 0.94393 0.99917 1.21682 0.92461 1.01356 0.97774 1.21416 0.99664 0.93812 1.00101 1.21638 0.97477 0.95311 0.98134 1.70819 1.30403 0.98682 1.27144 0.92780 0.98538 0.98533 0.91439 0.91423 0.89959 0.89972 0.80671 0.85459 0.83718 0.83695 0.83919 0.84046 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.08 -3.43 5.16 30.59 0.16 -3.27 16 11 C -0.09 -3.39 5.54 71.98 0.40 -2.99 16 12 S 0.02 0.51 22.16 -56.49 -1.25 -0.74 16 13 C 0.20 6.73 8.25 180.54 1.49 8.22 16 14 N -0.34 -11.01 12.33 -58.73 -0.72 -11.73 16 15 N -0.47 -10.61 7.52 -52.12 -0.39 -11.00 16 16 H 0.46 6.33 8.96 -213.11 -1.91 4.42 16 17 C 0.33 7.59 7.96 136.12 1.08 8.67 16 18 C -0.12 -1.72 9.59 23.66 0.23 -1.49 16 19 C -0.02 -0.24 9.54 23.81 0.23 -0.01 16 20 C -0.09 -1.11 5.87 -20.15 -0.12 -1.23 16 21 C -0.11 -1.03 9.41 22.56 0.21 -0.82 16 22 C -0.13 -1.05 10.03 22.23 0.22 -0.82 16 23 C -0.11 -0.93 10.04 22.34 0.22 -0.70 16 24 C -0.13 -1.24 10.03 22.23 0.22 -1.02 16 25 C -0.11 -1.27 9.79 22.57 0.22 -1.05 16 26 N -0.54 -16.38 10.76 -190.50 -2.05 -18.43 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.00 -0.22 8.14 -2.38 -0.02 -0.23 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.18 1.08 6.07 -2.92 -0.02 1.06 16 35 H 0.13 2.22 7.72 -2.92 -0.02 2.19 16 36 H 0.15 0.69 6.17 -2.91 -0.02 0.67 16 37 H 0.15 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.14 0.52 8.06 -2.91 -0.02 0.49 16 39 H 0.14 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -73.75 363.74 2.46 -71.30 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -0.85 Total: 6.02 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 5.41 Total: -25.06 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -2.88 Total: -98.08 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -1.25 Total: -0.74 kcal Total: -73.75 2.46 -71.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345077924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.912 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds