Wall clock time and date at job start Tue Mar 31 2020 10:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21651 * 120.00207 * 0.02562 * 14 13 3 16 16 C 1.47066 * 120.00059 * 179.97438 * 14 13 3 17 17 C 1.34759 * 123.35255 * 0.02744 * 16 14 13 18 18 S 1.70378 * 111.25165 * 179.97438 * 17 16 14 19 19 C 1.75515 * 92.54348 * 0.02562 * 18 17 16 20 20 C 1.34105 * 110.29892 * 359.71039 * 19 18 17 21 21 C 1.48247 * 123.69722 * 180.24626 * 20 19 18 22 22 C 1.39411 * 120.12552 * 129.97849 * 21 20 19 23 23 C 1.38001 * 119.86856 * 179.72127 * 22 21 20 24 24 C 1.38333 * 120.13030 * 0.54027 * 23 22 21 25 25 C 1.38336 * 120.25612 * 359.75557 * 24 23 22 26 26 C 1.38008 * 120.12735 * 359.96738 * 25 24 23 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.07997 * 124.37347 * 0.02562 * 17 16 14 35 35 H 1.08007 * 124.85138 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.06709 * 0.02562 * 22 21 20 37 37 H 1.07999 * 119.93553 * 180.30082 * 23 22 21 38 38 H 1.07995 * 119.87395 * 179.74529 * 24 23 22 39 39 H 1.08001 * 119.93820 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.06248 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3420 2.6318 0.4317 16 6 0.0459 3.3213 2.6239 17 6 0.8519 3.3963 3.7012 18 16 0.0933 4.2223 4.9838 19 6 -1.3707 4.4853 4.0520 20 6 -1.2423 3.9585 2.8254 21 6 -2.3022 4.0162 1.7905 22 6 -1.9999 4.4580 0.5032 23 6 -2.9893 4.5041 -0.4576 24 6 -4.2815 4.1238 -0.1426 25 6 -4.5887 3.6905 1.1347 26 6 -3.6062 3.6347 2.1023 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 1.8502 2.9866 3.7456 35 1 -2.2475 5.0023 4.4130 36 1 -0.9922 4.7588 0.2571 37 1 -2.7552 4.8415 -1.4565 38 1 -5.0535 4.1655 -0.8967 39 1 -5.5993 3.3951 1.3752 40 1 -3.8472 3.2958 3.0991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355804905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:31 Heat of formation + Delta-G solvation = 16.265038 kcal Electronic energy + Delta-G solvation = -23725.293185 eV Core-core repulsion = 20403.310025 eV Total energy + Delta-G solvation = -3321.983160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79090 -38.50347 -36.64686 -34.94006 -32.60670 -31.57468 -30.68208 -30.55673 -28.81545 -26.92292 -24.79714 -23.18225 -22.43250 -22.14671 -20.68576 -19.43736 -18.71369 -17.97224 -16.97573 -16.40030 -15.80254 -15.20716 -14.94693 -14.75552 -14.36926 -14.17660 -13.69166 -13.25550 -13.13575 -12.91425 -12.79771 -12.66832 -12.52255 -12.23620 -11.86036 -11.47739 -11.43275 -11.25138 -10.99764 -10.84971 -10.77790 -10.71312 -10.31515 -10.17010 -9.62837 -9.30843 -9.06588 -9.03311 -8.61552 -8.51573 -8.48651 -7.92357 -7.78290 -6.13520 -4.23074 0.85375 1.39911 1.56538 1.74135 1.93189 2.36204 3.22916 3.30161 3.31937 4.00070 4.07639 4.10933 4.37935 4.76229 4.98931 5.15417 5.17882 5.21145 5.34824 5.40766 5.60726 5.66000 5.71519 5.87525 6.08438 6.18246 6.28934 6.35566 6.41597 6.49184 6.68752 6.69665 6.80337 6.90719 7.06740 7.21837 7.25685 7.37638 7.45097 7.61670 7.73455 7.89754 8.17528 8.65753 8.76958 9.12630 9.44436 10.91709 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004347 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.271210 B = 6440.248451 C = 7801.229960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.555 3.445 15 O -0.528 6.528 16 C -0.129 4.129 17 C -0.215 4.215 18 S 0.167 5.833 19 C -0.232 4.232 20 C -0.016 4.016 21 C -0.030 4.030 22 C -0.038 4.038 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.136 4.136 26 C -0.106 4.106 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 7.897 11.965 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.338 3.662 15 O -0.407 6.407 16 C -0.146 4.146 17 C -0.352 4.352 18 S 0.434 5.566 19 C -0.367 4.367 20 C -0.028 4.028 21 C -0.032 4.032 22 C -0.057 4.057 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.154 4.154 26 C -0.124 4.124 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.579 8.140 12.573 18.338 hybrid contribution 1.061 -0.659 -1.186 1.723 sum -9.518 7.481 11.387 16.620 Atomic orbital electron populations 1.21827 0.98203 0.97975 1.01330 1.21930 0.92699 0.99740 1.02186 1.18792 0.94142 0.89164 0.80781 0.93134 1.21220 0.90711 1.39116 1.06297 0.92194 1.24869 0.98540 0.94793 0.95357 1.69891 1.35107 1.37514 1.09333 0.86473 0.84949 0.78429 0.77409 1.20555 1.21050 1.19882 1.46429 1.14236 1.55652 1.18533 1.17493 0.82988 0.79454 0.86216 1.90798 1.50821 1.59465 1.39649 1.20337 0.94088 1.03900 0.96305 1.25274 1.05094 1.06436 0.98414 1.82829 1.06156 1.52370 1.15294 1.25568 1.03243 1.10116 0.97749 1.18637 0.92989 0.97948 0.93178 1.18145 0.91340 1.00881 0.92821 1.21110 0.98626 0.94633 0.91301 1.21029 0.93015 1.01188 0.99231 1.21123 0.96611 0.99275 0.96404 1.20891 0.98847 1.01965 0.93662 1.21057 0.92084 1.00070 0.99195 0.94197 0.96017 0.93118 0.95168 0.88310 0.92552 0.78256 0.81167 0.81504 0.85968 0.86267 0.86621 0.86514 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.87 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.48 4.99 -56.12 -0.28 -14.76 16 14 C 0.56 11.11 6.22 -12.68 -0.08 11.03 16 15 O -0.53 -11.83 9.73 5.23 0.05 -11.78 16 16 C -0.13 -2.11 5.93 -104.82 -0.62 -2.73 16 17 C -0.21 -2.84 10.30 29.50 0.30 -2.53 16 18 S 0.17 1.74 23.01 -107.50 -2.47 -0.73 16 19 C -0.23 -2.74 10.82 29.28 0.32 -2.43 16 20 C -0.02 -0.23 5.53 -104.51 -0.58 -0.81 16 21 C -0.03 -0.46 5.03 -104.91 -0.53 -0.99 16 22 C -0.04 -0.64 7.16 -39.23 -0.28 -0.92 16 23 C -0.13 -1.89 10.03 -39.63 -0.40 -2.29 16 24 C -0.12 -1.53 10.04 -39.51 -0.40 -1.93 16 25 C -0.14 -1.73 10.03 -39.63 -0.40 -2.13 16 26 C -0.11 -1.46 9.62 -39.23 -0.38 -1.83 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.38 6.97 7.00 -40.82 -0.29 6.69 16 34 H 0.17 1.97 6.96 -52.49 -0.37 1.61 16 35 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 2.20 7.18 -52.49 -0.38 1.82 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -29.68 341.61 -10.30 -39.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.93 Total: 10.10 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.42 Total: -19.51 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.35 Total: -38.63 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.05 Total: -11.78 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.68 -10.30 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355804905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.241 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds