Wall clock time and date at job start Tue Mar 31 2020 10:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.09002 * 109.47337 * 54.99807 * 3 2 1 5 5 C 1.50696 * 109.47160 * 174.99955 * 3 2 1 6 6 H 1.08004 * 120.00051 * 119.99565 * 5 3 2 7 7 C 1.37876 * 120.00083 * 300.00304 * 5 3 2 8 8 N 1.31513 * 119.99750 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47082 * 59.99344 * 9 7 5 11 11 H 1.48494 * 109.46929 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46708 * 299.99601 * 9 7 5 13 13 N 1.46511 * 109.47091 * 294.99868 * 3 2 1 14 14 C 1.34770 * 119.99687 * 85.00301 * 13 3 2 15 15 O 1.21654 * 120.00424 * 359.97438 * 14 13 3 16 16 C 1.47063 * 120.00024 * 180.02562 * 14 13 3 17 17 C 1.34764 * 123.35082 * 0.02562 * 16 14 13 18 18 S 1.70381 * 111.25307 * 179.73645 * 17 16 14 19 19 C 1.75514 * 92.54425 * 359.97438 * 18 17 16 20 20 C 1.34105 * 110.29532 * 0.02562 * 19 18 17 21 21 C 1.48256 * 123.69219 * 180.02562 * 20 19 18 22 22 C 1.39411 * 120.12697 * 129.69802 * 21 20 19 23 23 C 1.38000 * 119.86827 * 179.71875 * 22 21 20 24 24 C 1.38333 * 120.12898 * 0.53444 * 23 22 21 25 25 C 1.38336 * 120.25752 * 359.76717 * 24 23 22 26 26 C 1.38005 * 120.12588 * 359.95069 * 25 24 23 27 27 H 1.09001 * 109.47330 * 300.00040 * 1 2 3 28 28 H 1.09006 * 109.47344 * 60.00064 * 1 2 3 29 29 H 1.09005 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46950 * 240.00345 * 2 1 3 31 31 H 1.08997 * 109.47118 * 119.99834 * 2 1 3 32 32 H 0.97006 * 119.99958 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99974 * 265.00086 * 13 3 2 34 34 H 1.07998 * 124.37209 * 359.75427 * 17 16 14 35 35 H 1.08000 * 124.85144 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.06464 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.93526 * 180.29852 * 23 22 21 38 38 H 1.07996 * 119.87507 * 179.73676 * 24 23 22 39 39 H 1.07999 * 119.94002 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.06212 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1732 9 14 6.0049 0.8814 1.3818 10 1 6.4993 2.2816 1.3821 11 1 6.3977 0.2179 2.6509 12 1 6.5975 0.1474 0.2349 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3420 2.6318 -0.4316 16 6 0.0458 3.3214 -2.6238 17 6 0.8514 3.3955 -3.7016 18 16 0.0899 4.2149 -4.9867 19 6 -1.3748 4.4762 -4.0555 20 6 -1.2466 3.9487 -2.8292 21 6 -2.3093 4.0000 -1.7968 22 6 -2.6950 2.8372 -1.1313 23 6 -3.6808 2.8921 -0.1671 24 6 -4.2936 4.0957 0.1318 25 6 -3.9193 5.2516 -0.5297 26 6 -2.9307 5.2100 -1.4917 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0610 2.9499 33 1 2.2719 2.1232 -1.9979 34 1 1.8506 2.9879 -3.7451 35 1 -2.2536 4.9885 -4.4183 36 1 -2.2199 1.8963 -1.3664 37 1 -3.9770 1.9928 0.3525 38 1 -5.0675 4.1331 0.8841 39 1 -4.4015 6.1885 -0.2926 40 1 -2.6391 6.1131 -2.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355804906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:35 Heat of formation + Delta-G solvation = 16.312071 kcal Electronic energy + Delta-G solvation = -23752.722009 eV Core-core repulsion = 20430.740888 eV Total energy + Delta-G solvation = -3321.981121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80004 -38.49526 -36.65197 -34.93878 -32.60807 -31.58096 -30.73892 -30.50582 -28.82910 -26.92122 -24.79723 -23.20277 -22.38771 -22.18914 -20.70753 -19.43056 -18.71077 -17.97917 -16.97480 -16.42614 -15.76224 -15.24954 -14.92959 -14.73110 -14.38585 -14.22169 -13.70975 -13.17081 -13.09932 -12.96055 -12.77926 -12.69229 -12.56812 -12.24666 -11.85462 -11.51242 -11.39944 -11.25857 -10.99925 -10.85972 -10.79038 -10.73404 -10.33020 -10.15331 -9.63849 -9.30842 -9.08796 -9.03771 -8.61668 -8.52518 -8.44173 -7.94530 -7.78591 -6.13214 -4.22724 0.85322 1.40026 1.56538 1.74222 1.93323 2.35959 3.24509 3.30125 3.31024 3.99657 4.07644 4.11384 4.38022 4.76364 4.98930 5.15604 5.18210 5.21181 5.34800 5.40547 5.60730 5.66063 5.71437 5.87206 6.08445 6.18237 6.28643 6.34808 6.38426 6.45863 6.65081 6.69692 6.80051 6.90543 7.04036 7.19448 7.25937 7.35919 7.44169 7.61090 7.72911 7.89833 8.17182 8.65728 8.77009 9.12565 9.44676 10.92026 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.004352 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.922764 B = 6431.802645 C = 7790.832943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.555 3.445 15 O -0.528 6.528 16 C -0.129 4.129 17 C -0.215 4.215 18 S 0.167 5.833 19 C -0.232 4.232 20 C -0.016 4.016 21 C -0.030 4.030 22 C -0.038 4.038 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.136 4.136 26 C -0.105 4.105 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 7.123 -12.241 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.338 3.662 15 O -0.407 6.407 16 C -0.146 4.146 17 C -0.352 4.352 18 S 0.434 5.566 19 C -0.367 4.367 20 C -0.028 4.028 21 C -0.033 4.033 22 C -0.057 4.057 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.154 4.154 26 C -0.124 4.124 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.185 0.815 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.896 7.359 -12.847 18.383 hybrid contribution 1.162 -0.425 1.264 1.769 sum -9.734 6.934 -11.583 16.643 Atomic orbital electron populations 1.21851 0.98358 0.97985 1.01212 1.21927 0.92649 0.99747 1.02231 1.18792 0.94158 0.89138 0.80808 0.93132 1.21181 0.90714 1.39171 1.06330 0.92255 1.24866 0.98544 0.94778 0.95349 1.69882 1.35200 1.37477 1.09311 0.86529 0.84923 0.78314 0.77465 1.20200 1.21101 1.20178 1.46427 1.14239 1.55649 1.18524 1.17492 0.83078 0.79328 0.86255 1.90798 1.50707 1.59696 1.39546 1.20337 0.94109 1.04045 0.96144 1.25276 1.05169 1.06488 0.98281 1.82829 1.05988 1.52661 1.15169 1.25567 1.03115 1.10154 0.97834 1.18638 0.92794 0.98028 0.93298 1.18153 0.94788 0.93885 0.96432 1.21121 0.93198 0.97969 0.93372 1.21024 0.97298 0.97901 0.98260 1.21125 0.99901 0.92935 0.99455 1.20892 0.98669 0.98093 0.97716 1.21061 0.96532 0.96506 0.98291 0.93028 0.94310 0.95933 0.95131 0.88278 0.92498 0.78255 0.81166 0.81501 0.85929 0.86286 0.86618 0.86501 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.49 4.99 -56.12 -0.28 -14.77 16 14 C 0.56 11.12 6.23 -12.68 -0.08 11.04 16 15 O -0.53 -11.85 9.70 5.23 0.05 -11.80 16 16 C -0.13 -2.11 5.93 -104.82 -0.62 -2.74 16 17 C -0.21 -2.84 10.30 29.50 0.30 -2.53 16 18 S 0.17 1.74 23.01 -107.50 -2.47 -0.73 16 19 C -0.23 -2.75 10.82 29.28 0.32 -2.43 16 20 C -0.02 -0.24 5.53 -104.50 -0.58 -0.81 16 21 C -0.03 -0.48 5.04 -104.91 -0.53 -1.01 16 22 C -0.04 -0.63 7.16 -39.23 -0.28 -0.91 16 23 C -0.13 -1.89 10.03 -39.63 -0.40 -2.29 16 24 C -0.12 -1.54 10.04 -39.51 -0.40 -1.93 16 25 C -0.14 -1.74 10.03 -39.63 -0.40 -2.14 16 26 C -0.11 -1.46 9.62 -39.23 -0.38 -1.84 16 27 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 28 H 0.04 0.82 5.51 -51.93 -0.29 0.53 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.38 6.97 7.00 -40.82 -0.29 6.69 16 34 H 0.17 1.97 6.96 -52.49 -0.37 1.61 16 35 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.12 2.18 7.02 -52.49 -0.37 1.81 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -29.71 341.29 -10.29 -40.00 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.92 Total: 10.00 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.42 Total: -19.43 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.35 Total: -38.67 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.05 Total: -11.80 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.71 -10.29 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355804906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.309 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds