Wall clock time and date at job start Tue Mar 31 2020 10:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.09002 * 109.47337 * 54.99807 * 3 2 1 5 5 C 1.50696 * 109.47160 * 174.99955 * 3 2 1 6 6 H 1.08004 * 120.00051 * 119.99565 * 5 3 2 7 7 C 1.37876 * 120.00083 * 300.00304 * 5 3 2 8 8 N 1.31513 * 119.99750 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47082 * 59.99344 * 9 7 5 11 11 H 1.48494 * 109.46929 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46708 * 299.99601 * 9 7 5 13 13 N 1.46511 * 109.47091 * 294.99868 * 3 2 1 14 14 C 1.34770 * 119.99687 * 85.00301 * 13 3 2 15 15 O 1.21654 * 120.00424 * 359.97438 * 14 13 3 16 16 C 1.47063 * 120.00024 * 180.02562 * 14 13 3 17 17 C 1.34764 * 123.35082 * 0.02562 * 16 14 13 18 18 S 1.70381 * 111.25307 * 179.73645 * 17 16 14 19 19 C 1.75514 * 92.54425 * 359.97438 * 18 17 16 20 20 C 1.34105 * 110.29532 * 0.02562 * 19 18 17 21 21 C 1.48256 * 123.69219 * 180.02562 * 20 19 18 22 22 C 1.39411 * 120.12697 * 129.69802 * 21 20 19 23 23 C 1.38000 * 119.86827 * 179.71875 * 22 21 20 24 24 C 1.38333 * 120.12898 * 0.53444 * 23 22 21 25 25 C 1.38336 * 120.25752 * 359.76717 * 24 23 22 26 26 C 1.38005 * 120.12588 * 359.95069 * 25 24 23 27 27 H 1.09001 * 109.47330 * 300.00040 * 1 2 3 28 28 H 1.09006 * 109.47344 * 60.00064 * 1 2 3 29 29 H 1.09005 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46950 * 240.00345 * 2 1 3 31 31 H 1.08997 * 109.47118 * 119.99834 * 2 1 3 32 32 H 0.97006 * 119.99958 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99974 * 265.00086 * 13 3 2 34 34 H 1.07998 * 124.37209 * 359.75427 * 17 16 14 35 35 H 1.08000 * 124.85144 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.06464 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.93526 * 180.29852 * 23 22 21 38 38 H 1.07996 * 119.87507 * 179.73676 * 24 23 22 39 39 H 1.07999 * 119.94002 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.06212 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1732 9 14 6.0049 0.8814 1.3818 10 1 6.4993 2.2816 1.3821 11 1 6.3977 0.2179 2.6509 12 1 6.5975 0.1474 0.2349 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3420 2.6318 -0.4316 16 6 0.0458 3.3214 -2.6238 17 6 0.8514 3.3955 -3.7016 18 16 0.0899 4.2149 -4.9867 19 6 -1.3748 4.4762 -4.0555 20 6 -1.2466 3.9487 -2.8292 21 6 -2.3093 4.0000 -1.7968 22 6 -2.6950 2.8372 -1.1313 23 6 -3.6808 2.8921 -0.1671 24 6 -4.2936 4.0957 0.1318 25 6 -3.9193 5.2516 -0.5297 26 6 -2.9307 5.2100 -1.4917 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0610 2.9499 33 1 2.2719 2.1232 -1.9979 34 1 1.8506 2.9879 -3.7451 35 1 -2.2536 4.9885 -4.4183 36 1 -2.2199 1.8963 -1.3664 37 1 -3.9770 1.9928 0.3525 38 1 -5.0675 4.1331 0.8841 39 1 -4.4015 6.1885 -0.2926 40 1 -2.6391 6.1131 -2.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355804906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:34 Heat of formation + Delta-G solvation = 0.258711 kcal Electronic energy + Delta-G solvation = -23753.418135 eV Core-core repulsion = 20430.740888 eV Total energy + Delta-G solvation = -3322.677247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13530 -39.76406 -37.86379 -36.72809 -34.38261 -33.16695 -32.11583 -31.67154 -29.99022 -28.77696 -26.04134 -24.98264 -23.65716 -23.31809 -22.16331 -21.15267 -20.12494 -19.12411 -18.32636 -17.78941 -17.20232 -17.04871 -16.33951 -16.01876 -15.84656 -15.63156 -15.01118 -14.63621 -14.37527 -14.26860 -14.15349 -13.89813 -13.72659 -13.52845 -13.41520 -13.17538 -13.14169 -12.90544 -12.66230 -12.42312 -12.20170 -12.08680 -11.83863 -11.71917 -11.58200 -11.06976 -10.70323 -10.52307 -10.20385 -9.69259 -9.66119 -9.46800 -8.94176 -8.16588 -6.34141 -0.17656 0.27946 0.62530 0.65439 0.93412 1.23284 1.43569 1.45403 1.53156 2.35297 2.55201 2.68575 3.00145 3.12902 3.76311 3.97893 4.13418 4.19798 4.22132 4.33450 4.45034 4.49492 4.56436 4.61645 4.66605 4.74952 4.79757 5.04374 5.07216 5.13847 5.20374 5.27050 5.29935 5.43705 5.55433 5.62289 5.63868 5.70810 5.79200 5.81392 5.94265 6.16401 6.19868 6.73264 7.01598 7.33034 7.60020 8.88531 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.004352 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.922764 B = 6431.802645 C = 7790.832943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.002 1.002 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.551 3.449 15 O -0.560 6.560 16 C -0.165 4.165 17 C -0.217 4.217 18 S 0.265 5.735 19 C -0.224 4.224 20 C -0.046 4.046 21 C -0.045 4.045 22 C -0.064 4.064 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.113 4.113 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.398 0.602 34 H 0.184 0.816 35 H 0.195 0.805 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 8.910 -14.968 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.180 3.820 4 H 0.016 0.984 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.337 3.663 15 O -0.441 6.441 16 C -0.183 4.183 17 C -0.355 4.355 18 S 0.532 5.468 19 C -0.359 4.359 20 C -0.057 4.057 21 C -0.048 4.048 22 C -0.083 4.083 23 C -0.163 4.163 24 C -0.139 4.139 25 C -0.151 4.151 26 C -0.131 4.131 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.201 0.799 35 H 0.212 0.788 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.655 9.160 -15.621 21.011 hybrid contribution 1.038 -0.910 1.998 2.428 sum -9.618 8.250 -13.623 18.605 Atomic orbital electron populations 1.21655 0.96931 0.98904 1.00227 1.21765 0.93789 0.99122 1.01108 1.18326 0.93538 0.89043 0.81090 0.98429 1.21537 0.91443 1.39084 1.06760 0.91246 1.25747 1.03254 0.94324 0.94955 1.70043 1.37113 1.38246 1.09819 0.85447 0.79165 0.78408 0.77611 1.19760 1.21137 1.18861 1.46159 1.15214 1.56178 1.17557 1.18088 0.82121 0.78615 0.87489 1.90780 1.51423 1.60679 1.41246 1.20027 0.96020 1.06904 0.95362 1.25612 1.05591 1.05617 0.98728 1.82555 1.03255 1.49262 1.11694 1.25965 1.04824 1.08327 0.96828 1.18658 0.92373 1.00017 0.94653 1.18395 0.95302 0.94149 0.96906 1.21037 0.94475 0.97639 0.95162 1.21222 0.97594 0.99171 0.98303 1.21454 1.00191 0.92363 0.99916 1.21324 0.98005 0.99156 0.96656 1.21387 0.96543 0.96530 0.98643 0.95448 0.93873 0.93857 0.94337 0.90998 0.92600 0.76745 0.79887 0.78776 0.88639 0.86023 0.83999 0.83266 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.77 2.24 44.24 0.10 14.87 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -29.40 8.73 25.60 0.22 -29.17 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 13 N -0.70 -30.04 4.99 -449.70 -2.24 -32.28 16 14 C 0.55 23.05 6.23 86.56 0.54 23.59 16 15 O -0.56 -26.88 9.70 -4.20 -0.04 -26.92 16 16 C -0.17 -5.41 5.93 -19.99 -0.12 -5.53 16 17 C -0.22 -5.32 10.30 67.02 0.69 -4.63 16 18 S 0.26 4.49 23.01 -56.49 -1.30 3.19 16 19 C -0.22 -4.65 10.82 66.88 0.72 -3.93 16 20 C -0.05 -1.35 5.53 -19.79 -0.11 -1.46 16 21 C -0.05 -1.44 5.04 -20.05 -0.10 -1.55 16 22 C -0.06 -2.27 7.16 22.50 0.16 -2.11 16 23 C -0.14 -4.53 10.03 22.24 0.22 -4.31 16 24 C -0.12 -3.15 10.04 22.32 0.22 -2.92 16 25 C -0.13 -3.21 10.03 22.24 0.22 -2.99 16 26 C -0.11 -2.99 9.62 22.49 0.22 -2.78 16 27 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 28 H 0.04 1.92 5.51 -2.38 -0.01 1.91 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 32 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 33 H 0.40 14.53 7.00 -92.71 -0.65 13.89 16 34 H 0.18 3.84 6.96 -2.91 -0.02 3.82 16 35 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.10 3.75 7.02 -2.91 -0.02 3.73 16 37 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -68.73 341.29 3.32 -65.41 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.42 Total: 31.00 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 4.22 Total: -32.22 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.00 Total: -84.74 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.30 Total: 3.19 kcal Total: -68.73 3.32 -65.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355804906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.664 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds