Wall clock time and date at job start Tue Mar 31 2020 11:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35979 * 117.00328 * 2 1 4 4 C 1.38599 * 120.06867 * 359.97438 * 3 2 1 5 5 C 1.38225 * 120.05994 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.19711 * 359.97438 * 5 4 3 7 7 C 1.38359 * 120.14436 * 359.72403 * 6 5 4 8 8 F 1.35104 * 120.03127 * 180.30293 * 7 6 5 9 9 C 1.38952 * 119.93795 * 0.55255 * 7 6 5 10 10 N 1.40126 * 120.09811 * 179.72261 * 9 7 6 11 11 C 1.34777 * 120.00096 * 325.68655 * 10 9 7 12 12 O 1.21609 * 120.00023 * 356.58438 * 11 10 9 13 13 C 1.47595 * 120.00247 * 176.58935 * 11 10 9 14 14 C 1.40035 * 119.90012 * 179.97438 * 13 11 10 15 15 C 1.36301 * 120.10613 * 180.29711 * 14 13 11 16 16 C 1.40897 * 119.89142 * 359.47731 * 15 14 13 17 17 C 1.41086 * 120.10320 * 180.23630 * 16 15 14 18 18 H 1.08003 * 120.00365 * 200.87371 * 17 16 15 19 19 C 1.40232 * 119.99847 * 20.86473 * 17 16 15 20 20 N 1.30646 * 119.99961 * 18.04335 * 19 17 16 21 21 Si 1.86804 * 119.99934 * 198.03966 * 19 17 16 22 22 H 1.48495 * 109.47101 * 90.00322 * 21 19 17 23 23 H 1.48501 * 109.46825 * 210.00435 * 21 19 17 24 24 H 1.48494 * 109.47114 * 330.00017 * 21 19 17 25 25 C 1.40901 * 119.79868 * 0.52431 * 16 15 14 26 26 C 1.36306 * 119.88883 * 359.72741 * 25 16 15 27 27 H 1.09002 * 109.47255 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46968 * 60.00085 * 1 2 3 29 29 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.96592 * 0.04221 * 4 3 2 31 31 H 1.07991 * 119.90260 * 180.02562 * 5 4 3 32 32 H 1.08008 * 119.92678 * 180.02562 * 6 5 4 33 33 H 0.97007 * 119.99950 * 145.68670 * 10 9 7 34 34 H 1.08001 * 119.94382 * 0.02562 * 14 13 11 35 35 H 1.07992 * 120.05147 * 179.73024 * 15 14 13 36 36 H 0.96999 * 120.00056 * 179.97438 * 20 19 17 37 37 H 1.07993 * 120.05555 * 179.71223 * 25 16 15 38 38 H 1.08004 * 119.94255 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2929 2.3749 -0.0005 5 6 1.9207 3.6063 -0.0011 6 6 3.3016 3.6832 -0.0005 7 6 4.0618 2.5272 0.0063 8 9 5.4106 2.6049 0.0130 9 6 3.4368 1.2862 0.0010 10 7 4.2035 0.1132 0.0020 11 6 5.3821 0.0780 -0.6508 12 8 5.7510 1.0430 -1.2922 13 6 6.2250 -1.1320 -0.5874 14 6 7.4489 -1.1665 -1.2669 15 6 8.2278 -2.2839 -1.2162 16 6 7.8049 -3.4013 -0.4694 17 6 8.6099 -4.5584 -0.4097 18 1 8.1712 -5.5083 -0.1421 19 6 9.9797 -4.4751 -0.6981 20 7 10.5829 -3.3164 -0.6748 21 14 10.9420 -6.0208 -1.1155 22 1 10.9005 -6.2489 -2.5822 23 1 12.3523 -5.8588 -0.6794 24 1 10.3383 -7.1836 -0.4164 25 6 6.5726 -3.3620 0.2127 26 6 5.7980 -2.2420 0.1519 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2144 2.3191 -0.0003 31 1 1.3312 4.5111 -0.0011 32 1 3.7876 4.6477 -0.0005 33 1 3.8860 -0.6734 0.4726 34 1 7.7741 -0.3079 -1.8357 35 1 9.1695 -2.3111 -1.7441 36 1 11.5305 -3.2588 -0.8740 37 1 6.2422 -4.2178 0.7825 38 1 4.8535 -2.2108 0.6747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358473702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:32 Heat of formation + Delta-G solvation = -66.777862 kcal Electronic energy + Delta-G solvation = -25123.207327 eV Core-core repulsion = 21231.409981 eV Total energy + Delta-G solvation = -3891.797347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.38652 -40.43000 -38.98813 -37.39214 -36.91754 -34.32714 -33.92636 -30.51085 -29.89813 -29.75697 -29.01711 -27.39931 -25.93049 -23.14502 -22.45648 -21.67159 -20.81742 -19.65495 -18.53584 -17.67190 -17.49760 -16.75737 -16.40561 -15.89839 -15.75766 -15.37281 -15.04327 -14.79362 -14.62934 -14.09002 -13.96994 -13.77437 -13.25207 -12.92089 -12.78599 -12.48329 -12.35031 -12.19686 -11.91269 -11.82347 -11.37516 -11.32049 -11.20130 -11.11388 -10.95857 -10.68042 -10.08343 -10.01981 -9.56765 -9.31343 -9.02454 -8.44013 -7.83303 -7.69564 -7.55097 -7.03088 -4.61876 1.16574 1.22604 2.23267 2.90459 2.95037 2.97591 2.99121 3.05050 3.47948 3.58859 3.72471 3.89585 4.54324 4.56266 4.68129 4.83369 4.92987 4.95897 5.07368 5.28276 5.30335 5.58371 5.78040 5.86717 5.96636 5.99822 6.09890 6.27323 6.29468 6.64026 6.77360 6.82499 6.87659 7.07067 7.09484 7.30479 7.42558 7.61197 7.74746 7.86328 8.02785 8.13269 8.42886 8.62000 8.75274 8.97143 9.85748 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.003003 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.095602 B = 9322.975179 C =10226.881293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.119 3.881 4 C -0.204 4.204 5 C -0.079 4.079 6 C -0.175 4.175 7 C 0.132 3.868 8 F -0.106 7.106 9 C 0.101 3.899 10 N -0.671 5.671 11 C 0.561 3.439 12 O -0.541 6.541 13 C -0.283 4.283 14 C -0.032 4.032 15 C -0.187 4.187 16 C 0.126 3.874 17 C -0.436 4.436 18 H 0.085 0.915 19 C 0.072 3.928 20 N -0.764 5.764 21 Si 0.916 3.084 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.236 4.236 26 C -0.048 4.048 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.412 0.588 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.288 0.712 37 H 0.098 0.902 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.537 6.752 2.427 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.071 3.929 4 C -0.224 4.224 5 C -0.098 4.098 6 C -0.194 4.194 7 C 0.109 3.891 8 F -0.084 7.084 9 C 0.003 3.997 10 N -0.317 5.317 11 C 0.357 3.643 12 O -0.420 6.420 13 C -0.287 4.287 14 C -0.052 4.052 15 C -0.207 4.207 16 C 0.123 3.877 17 C -0.463 4.463 18 H 0.103 0.897 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.255 4.255 26 C -0.067 4.067 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.817 7.278 1.955 16.624 hybrid contribution 0.243 -0.848 0.134 0.892 sum -14.574 6.430 2.089 16.066 Atomic orbital electron populations 1.23068 0.78072 1.04085 1.01303 1.86066 1.21510 1.26104 1.88836 1.18443 0.89717 0.85178 0.99539 1.21023 0.99967 0.91619 1.09771 1.20631 0.93374 0.97195 0.98629 1.20959 0.94238 0.97295 1.06933 1.17224 0.78320 0.91946 1.01605 1.91650 1.27381 1.96732 1.92589 1.17068 0.87814 0.87387 1.07424 1.43511 1.21210 1.12723 1.54263 1.18824 0.79395 0.88431 0.77605 1.90726 1.72140 1.37030 1.42095 1.18730 0.99647 0.94500 1.15870 1.20478 0.91993 0.97155 0.95549 1.21154 1.01579 0.94028 1.03889 1.17805 0.90587 0.92522 0.86830 1.19899 0.92515 0.96029 1.37880 0.89660 1.26162 0.98643 0.97972 0.92247 1.69749 1.12151 1.26174 1.30621 0.86170 0.78455 0.81367 0.80065 1.18859 1.19944 1.18261 1.20629 0.98942 0.98308 1.07640 1.20359 0.96808 0.93356 0.96142 0.92593 0.92573 0.88092 0.84836 0.84973 0.84551 0.75057 0.88102 0.85453 0.90063 0.88430 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.96 10.04 -19.67 -0.20 -4.15 16 3 C 0.12 1.65 6.70 -39.07 -0.26 1.39 16 4 C -0.20 -2.22 9.04 -39.45 -0.36 -2.58 16 5 C -0.08 -0.84 10.04 -39.56 -0.40 -1.23 16 6 C -0.17 -2.31 10.02 -39.51 -0.40 -2.70 16 7 C 0.13 2.29 6.68 -39.27 -0.26 2.03 16 8 F -0.11 -2.20 13.44 2.25 0.03 -2.17 16 9 C 0.10 1.74 6.29 -83.43 -0.52 1.21 16 10 N -0.67 -12.64 5.14 -10.62 -0.05 -12.69 16 11 C 0.56 12.70 7.21 -12.44 -0.09 12.61 16 12 O -0.54 -13.51 12.78 5.27 0.07 -13.44 16 13 C -0.28 -6.70 5.89 -104.73 -0.62 -7.32 16 14 C -0.03 -0.81 9.52 -39.61 -0.38 -1.19 16 15 C -0.19 -4.85 8.67 -39.27 -0.34 -5.19 16 16 C 0.13 3.23 5.62 -106.80 -0.60 2.63 16 17 C -0.44 -10.83 9.06 -37.75 -0.34 -11.17 16 18 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 19 C 0.07 1.68 5.17 -17.31 -0.09 1.60 16 20 N -0.76 -18.64 10.71 55.56 0.60 -18.05 16 21 Si 0.92 17.33 29.60 -169.99 -5.03 12.30 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.51 9.73 -39.27 -0.38 -5.90 16 26 C -0.05 -1.04 9.47 -39.60 -0.38 -1.42 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.41 6.89 6.56 -40.82 -0.27 6.63 16 34 H 0.10 2.50 7.63 -52.49 -0.40 2.10 16 35 H 0.13 3.36 5.87 -52.49 -0.31 3.05 16 36 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.62 6.38 -52.48 -0.33 1.29 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -30.51 328.54 -7.74 -38.25 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.68 Total: 11.02 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -4.42 Total: -16.02 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.54 Total: -30.74 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.13 Total: -17.59 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.17 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.51 -7.74 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358473702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.531 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds