Wall clock time and date at job start Tue Mar 31 2020 10:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 C 1.50695 * 109.46978 * 239.99874 * 2 1 3 5 5 H 1.08000 * 119.99716 * 240.00055 * 4 2 1 6 6 C 1.37879 * 120.00198 * 60.00182 * 4 2 1 7 7 N 1.31510 * 119.99747 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47427 * 59.99651 * 8 6 4 10 10 H 1.48494 * 109.47469 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47060 * 299.99778 * 8 6 4 12 12 C 1.52995 * 109.46827 * 119.99785 * 2 1 3 13 13 N 1.46503 * 109.47293 * 299.99931 * 12 2 1 14 14 S 1.65600 * 120.00062 * 165.00295 * 13 12 2 15 15 O 1.42098 * 104.27576 * 308.92781 * 14 13 12 16 16 O 1.42102 * 104.27841 * 181.06908 * 14 13 12 17 17 C 1.81404 * 104.45074 * 64.99734 * 14 13 12 18 18 C 1.50701 * 109.47098 * 179.97438 * 17 14 13 19 19 C 1.38224 * 120.01134 * 90.00179 * 18 17 14 20 20 C 1.38222 * 120.02535 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.05174 * 0.02562 * 20 19 18 22 22 C 1.38180 * 120.02316 * 359.97438 * 21 20 19 23 23 C 1.38437 * 120.01534 * 269.72678 * 18 17 14 24 24 F 1.35103 * 120.02014 * 359.97438 * 23 18 17 25 25 H 1.09003 * 109.47144 * 300.00842 * 1 2 3 26 26 H 1.09005 * 109.47045 * 60.00054 * 1 2 3 27 27 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46867 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47065 * 299.99933 * 3 2 1 30 30 H 1.09000 * 109.47248 * 59.99475 * 3 2 1 31 31 H 0.97002 * 119.99873 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47397 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47503 * 59.99853 * 12 2 1 34 34 H 0.96993 * 119.99757 * 344.99550 * 13 12 2 35 35 H 1.09002 * 109.47124 * 60.00022 * 17 14 13 36 36 H 1.09001 * 109.46975 * 300.00144 * 17 14 13 37 37 H 1.08000 * 119.98788 * 359.97438 * 19 18 17 38 38 H 1.07995 * 119.97136 * 179.97438 * 20 19 18 39 39 H 1.07992 * 119.98951 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.01096 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 16 1.6255 -0.7780 3.9213 15 8 1.0209 -2.0452 3.7030 16 8 1.0523 0.1623 4.8194 17 6 3.4005 -0.9668 4.2447 18 6 3.5993 -1.6426 5.5769 19 6 3.6752 -3.0209 5.6484 20 6 3.8580 -3.6411 6.8701 21 6 3.9647 -2.8837 8.0220 22 6 3.8891 -1.5057 7.9529 23 6 3.7116 -0.8831 6.7288 24 9 3.6437 0.4645 6.6592 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7088 1.1612 -3.4844 32 1 3.1299 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 1.1850 0.8645 2.3729 35 1 3.8732 0.0153 4.2617 36 1 3.8506 -1.5730 3.4585 37 1 3.5916 -3.6135 4.7494 38 1 3.9168 -4.7180 6.9250 39 1 4.1071 -3.3693 8.9760 40 1 3.9720 -0.9144 8.8528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396514590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:27 Heat of formation + Delta-G solvation = -119.758581 kcal Electronic energy + Delta-G solvation = -24513.319877 eV Core-core repulsion = 20754.669065 eV Total energy + Delta-G solvation = -3758.650812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.02734 -40.09810 -38.65929 -38.15011 -37.06389 -34.93060 -34.22410 -32.33688 -31.57546 -28.52574 -27.52001 -27.37900 -26.22279 -23.88030 -22.96132 -20.78669 -20.35407 -18.95520 -18.68134 -17.76174 -17.68265 -17.60092 -17.08600 -16.74787 -16.56613 -16.39306 -15.59908 -15.25671 -15.11893 -14.85876 -14.46448 -14.43222 -14.05625 -13.79459 -13.54979 -13.38448 -13.29661 -13.23217 -13.13211 -12.90638 -12.70527 -12.65622 -12.53252 -12.32660 -12.24649 -12.08264 -12.01818 -11.45834 -11.09993 -10.66289 -10.42239 -10.26340 -9.97013 -9.70130 -7.96694 -6.13486 -0.92473 0.10142 0.17102 1.48011 1.49438 1.55191 1.74758 2.49089 2.51375 2.71767 3.08589 3.17928 3.23176 3.27187 3.65325 3.91726 4.12551 4.21251 4.29954 4.35383 4.39397 4.58424 4.76107 4.81853 4.83578 4.99979 5.06518 5.09590 5.12237 5.24542 5.25406 5.27605 5.37423 5.53131 5.70943 5.72199 5.83397 6.07893 6.18704 6.29095 6.47515 6.93962 7.54604 9.02116 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.003367 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.478859 B = 8312.898083 C = 8724.509649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.053 3.947 3 C -0.125 4.125 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.271 1.271 12 C 0.130 3.870 13 N -1.111 6.111 14 S 2.610 3.390 15 O -0.983 6.983 16 O -0.991 6.991 17 C -0.571 4.571 18 C -0.150 4.150 19 C -0.092 4.092 20 C -0.125 4.125 21 C -0.076 4.076 22 C -0.159 4.159 23 C 0.079 3.921 24 F -0.144 7.144 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.257 0.743 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.417 0.583 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -6.830 19.485 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 C -0.183 4.183 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.544 5.544 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.196 1.196 12 C 0.004 3.996 13 N -0.872 5.872 14 S 2.706 3.294 15 O -0.973 6.973 16 O -0.981 6.981 17 C -0.700 4.700 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.143 4.143 21 C -0.094 4.094 22 C -0.177 4.177 23 C 0.059 3.941 24 F -0.123 7.123 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.175 0.825 36 H 0.191 0.809 37 H 0.171 0.829 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.285 -7.080 19.830 22.627 hybrid contribution 0.468 0.751 -1.554 1.789 sum 8.754 -6.329 18.276 21.229 Atomic orbital electron populations 1.21723 0.98499 0.98466 0.99724 1.18298 0.92398 0.93197 0.90996 1.21709 0.98630 0.98037 0.99956 1.21360 1.31556 1.12300 0.91164 0.92241 1.25551 0.95248 0.95593 1.01336 1.69949 1.37287 1.23717 1.23451 0.85788 0.78834 0.78686 0.79302 1.20162 1.21694 1.19616 1.21496 0.98327 0.95519 0.84218 1.55432 1.78680 1.30461 1.22607 1.04847 0.78391 0.73480 0.72640 1.93539 1.74296 1.44627 1.84843 1.93536 1.76685 1.63067 1.64821 1.29425 1.25207 1.11961 1.03436 1.19257 1.09111 0.95398 0.91493 1.21490 0.96576 0.91906 1.01092 1.21720 0.98760 1.02534 0.91280 1.21629 0.95089 0.91970 1.00719 1.21565 1.02948 0.97081 0.96149 1.18053 1.03573 0.76917 0.95554 1.91498 1.93734 1.29839 1.97209 0.95575 0.92236 0.96339 0.94878 0.92443 0.95023 0.93321 0.90638 0.91990 0.74667 0.82543 0.80867 0.82863 0.81446 0.80781 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.08 71.98 0.58 -5.40 16 2 C 0.05 2.39 0.51 -52.93 -0.03 2.37 16 3 C -0.13 -5.50 8.08 71.98 0.58 -4.92 16 4 C -0.53 -26.47 8.01 25.60 0.21 -26.26 16 5 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 6 C 0.02 1.14 5.15 84.66 0.44 1.58 16 7 N -0.91 -48.86 9.35 21.45 0.20 -48.66 16 8 Si 0.95 41.54 29.54 68.60 2.03 43.56 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 C 0.13 4.82 4.96 86.38 0.43 5.24 16 13 N -1.11 -37.10 5.22 -187.49 -0.98 -38.07 16 14 S 2.61 82.92 5.44 -56.49 -0.31 82.62 16 15 O -0.98 -36.60 17.50 -127.65 -2.23 -38.83 16 16 O -0.99 -36.98 18.08 -127.65 -2.31 -39.29 16 17 C -0.57 -13.22 6.03 71.24 0.43 -12.79 16 18 C -0.15 -3.48 5.15 -19.82 -0.10 -3.58 16 19 C -0.09 -1.71 9.70 22.26 0.22 -1.50 16 20 C -0.13 -1.66 10.04 22.27 0.22 -1.44 16 21 C -0.08 -0.91 10.04 22.26 0.22 -0.69 16 22 C -0.16 -2.68 10.03 22.31 0.22 -2.46 16 23 C 0.08 1.89 7.24 22.37 0.16 2.05 16 24 F -0.14 -3.94 16.47 44.97 0.74 -3.20 16 25 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 26 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 2.87 6.07 -2.38 -0.01 2.85 16 30 H 0.03 1.20 6.60 -2.39 -0.02 1.19 16 31 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.36 7.69 -2.39 -0.02 2.35 16 34 H 0.42 13.82 6.44 -96.75 -0.62 13.19 16 35 H 0.16 3.24 7.63 -2.39 -0.02 3.23 16 36 H 0.17 3.08 8.09 -2.39 -0.02 3.06 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -68.67 344.44 1.16 -67.51 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.44 Total: 22.15 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 3.58 Total: -47.79 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -0.78 Total: -86.73 kcal Atomic # 8 Polarization: -73.57 SS G_CDS: -4.54 Total: -78.12 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.74 Total: -3.20 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 82.92 SS G_CDS: -0.31 Total: 82.62 kcal Total: -68.67 1.16 -67.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396514590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.244 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds