Wall clock time and date at job start Tue Mar 31 2020 10:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46902 * 2 1 4 4 C 1.50701 * 109.47146 * 240.00311 * 2 1 3 5 5 H 1.08003 * 119.99623 * 239.99761 * 4 2 1 6 6 C 1.37872 * 120.00050 * 59.99551 * 4 2 1 7 7 N 1.31516 * 120.00428 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99949 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47012 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46979 * 120.00141 * 8 6 4 11 11 H 1.48499 * 109.46911 * 240.00115 * 8 6 4 12 12 C 1.53000 * 109.47081 * 119.99845 * 2 1 3 13 13 N 1.46493 * 109.47287 * 300.00199 * 12 2 1 14 14 S 1.65594 * 120.00203 * 165.00011 * 13 12 2 15 15 O 1.42101 * 104.27863 * 308.93037 * 14 13 12 16 16 O 1.42094 * 104.28218 * 181.07013 * 14 13 12 17 17 C 1.81402 * 104.44966 * 64.99814 * 14 13 12 18 18 C 1.50700 * 109.47499 * 180.02562 * 17 14 13 19 19 C 1.38250 * 119.97595 * 270.28505 * 18 17 14 20 20 C 1.38194 * 120.02377 * 180.32342 * 19 18 17 21 21 C 1.38460 * 119.97497 * 359.41202 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.46894 * 299.99971 * 1 2 3 26 26 H 1.08995 * 109.47060 * 60.00034 * 1 2 3 27 27 H 1.09001 * 109.46642 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46776 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46987 * 300.00338 * 3 2 1 30 30 H 1.08997 * 109.46893 * 59.99710 * 3 2 1 31 31 H 0.96995 * 120.00258 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.46565 * 180.02562 * 12 2 1 33 33 H 1.08993 * 109.46915 * 60.00490 * 12 2 1 34 34 H 0.96999 * 119.99962 * 344.99866 * 13 12 2 35 35 H 1.09005 * 109.46813 * 59.99980 * 17 14 13 36 36 H 1.09000 * 109.47349 * 300.00221 * 17 14 13 37 37 H 1.07998 * 119.98560 * 0.03739 * 19 18 17 38 38 H 1.08002 * 120.01531 * 179.69754 * 20 19 18 39 39 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 40 40 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 16 1.6257 -0.7781 3.9212 15 8 1.0211 -2.0454 3.7029 16 8 1.0524 0.1620 4.8194 17 6 3.4006 -0.9668 4.2446 18 6 3.5995 -1.6438 5.5762 19 6 3.6998 -0.8861 6.7282 20 6 3.8889 -1.5055 7.9490 21 6 3.9657 -2.8861 8.0196 22 9 4.1444 -3.4931 9.2134 23 6 3.8588 -3.6444 6.8660 24 6 3.6751 -3.0225 5.6456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8899 31 1 0.7088 1.1614 -3.4844 32 1 3.1300 -0.7208 1.2494 33 1 1.6768 -1.7488 1.2492 34 1 1.1851 0.8644 2.3729 35 1 3.8732 0.0153 4.2617 36 1 3.8507 -1.5730 3.4584 37 1 3.6350 0.1906 6.6734 38 1 3.9721 -0.9131 8.8482 39 1 3.9181 -4.7214 6.9200 40 1 3.5913 -3.6136 4.7457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416529140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:32 Heat of formation + Delta-G solvation = -101.922763 kcal Electronic energy + Delta-G solvation = -24093.515275 eV Core-core repulsion = 20335.637882 eV Total energy + Delta-G solvation = -3757.877392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.18976 -39.48361 -37.09569 -36.75718 -35.73783 -33.27254 -32.98642 -31.49569 -30.57960 -27.29794 -25.72334 -25.56705 -24.55451 -23.42772 -22.08074 -19.26600 -18.87824 -17.97715 -17.60233 -16.78475 -16.59154 -15.95695 -15.82834 -15.81739 -15.45305 -14.80708 -14.39847 -14.20517 -13.91986 -13.77048 -13.54144 -13.11790 -12.86087 -12.66660 -12.29469 -12.24876 -11.93317 -11.88025 -11.75605 -11.50626 -11.33642 -11.16745 -11.05133 -10.92760 -10.66695 -10.43103 -10.20042 -9.68717 -9.46700 -9.37624 -9.03808 -8.80911 -8.69159 -8.40188 -6.04422 -4.15647 0.20907 0.88124 0.90292 2.99867 3.21232 3.24346 3.33512 3.36316 3.83115 3.92634 4.14862 4.24479 4.36079 4.45523 4.56060 4.86802 4.90975 5.13920 5.22225 5.25013 5.56789 5.65345 5.70853 5.77137 5.85576 6.06240 6.11009 6.39070 6.45572 6.50890 6.72067 6.88956 6.96820 7.04587 7.32267 7.48694 7.56771 7.67493 8.01084 8.12575 8.36347 8.84983 9.50516 10.96707 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.027461 B = 0.003005 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.375254 B = 9315.937801 C = 9802.939260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.123 3.877 13 N -1.108 6.108 14 S 2.607 3.393 15 O -0.950 6.950 16 O -0.964 6.964 17 C -0.593 4.593 18 C -0.097 4.097 19 C -0.078 4.078 20 C -0.151 4.151 21 C 0.102 3.898 22 F -0.138 7.138 23 C -0.150 4.150 24 C -0.076 4.076 25 H 0.010 0.990 26 H 0.084 0.916 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -3.146 16.471 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.002 4.002 13 N -0.871 5.871 14 S 2.698 3.302 15 O -0.940 6.940 16 O -0.954 6.954 17 C -0.719 4.719 18 C -0.099 4.099 19 C -0.097 4.097 20 C -0.170 4.170 21 C 0.082 3.918 22 F -0.117 7.117 23 C -0.169 4.169 24 C -0.095 4.095 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.302 -3.495 16.889 18.362 hybrid contribution 1.003 -0.063 -0.951 1.384 sum 7.304 -3.558 15.938 17.889 Atomic orbital electron populations 1.21821 0.97551 0.99396 1.00256 1.18257 0.93051 0.92570 0.89951 1.21848 0.98402 0.98501 1.00317 1.21049 1.31642 1.12142 0.89995 0.92364 1.24892 0.94846 0.94907 0.98878 1.69819 1.36513 1.22712 1.23156 0.86535 0.78642 0.79683 0.83092 1.19787 1.21055 1.21120 1.21709 0.96979 0.96369 0.85187 1.55552 1.78039 1.30723 1.22771 1.05092 0.76898 0.74680 0.73489 1.93594 1.72082 1.43733 1.84618 1.93566 1.74799 1.62505 1.64556 1.29753 1.29525 1.10230 1.02358 1.19101 1.04152 0.93805 0.92818 1.21074 0.96844 1.00866 0.90910 1.21157 1.03556 0.92809 0.99486 1.17800 1.01880 0.91175 0.80951 1.91511 1.92671 1.83611 1.43906 1.21179 1.03353 1.01090 0.91279 1.21116 0.96534 0.93656 0.98229 0.97074 0.89760 0.95328 0.95424 0.89556 0.97228 0.93016 0.93115 0.91327 0.74648 0.83782 0.83656 0.84020 0.84107 0.84041 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.41 0.51 -155.65 -0.08 1.33 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -12.70 8.01 -34.44 -0.28 -12.97 16 5 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.15 9.35 55.43 0.52 -22.63 16 8 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 C 0.12 2.24 4.96 -4.05 -0.02 2.22 16 13 N -1.11 -17.64 5.22 -10.62 -0.06 -17.69 16 14 S 2.61 38.23 5.44 -107.50 -0.58 37.65 16 15 O -0.95 -16.98 17.50 -57.54 -1.01 -17.99 16 16 O -0.96 -16.12 18.08 -57.54 -1.04 -17.16 16 17 C -0.59 -6.22 6.20 36.01 0.22 -6.00 16 18 C -0.10 -1.06 5.14 -104.61 -0.54 -1.60 16 19 C -0.08 -0.79 9.70 -39.59 -0.38 -1.17 16 20 C -0.15 -1.45 10.03 -39.52 -0.40 -1.84 16 21 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 22 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 23 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 24 C -0.08 -0.80 9.70 -39.59 -0.38 -1.18 16 25 H 0.01 0.22 7.20 -51.93 -0.37 -0.16 16 26 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.01 0.17 6.60 -51.93 -0.34 -0.18 16 31 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 34 H 0.42 6.53 6.44 -34.46 -0.22 6.30 16 35 H 0.14 1.18 8.09 -51.92 -0.42 0.76 16 36 H 0.15 1.30 8.08 -51.92 -0.42 0.88 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -30.53 345.55 -9.28 -39.82 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.31 Total: 5.18 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -2.03 Total: -25.99 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.46 Total: -40.32 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -2.05 Total: -35.15 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.58 Total: 37.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.53 -9.28 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416529140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.108 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds