Wall clock time and date at job start Tue Mar 31 2020 11:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36725 * 120.00136 * 2 1 4 4 H 1.07998 * 120.00440 * 142.64915 * 3 2 1 5 5 C 1.39069 * 119.99820 * 322.66046 * 3 2 1 6 6 N 1.31359 * 120.00340 * 158.60231 * 5 3 2 7 7 Si 1.86795 * 119.99914 * 338.59939 * 5 3 2 8 8 H 1.48504 * 109.47259 * 95.75358 * 7 5 3 9 9 H 1.48502 * 109.47298 * 215.75688 * 7 5 3 10 10 H 1.48503 * 109.47203 * 335.75419 * 7 5 3 11 11 C 1.34781 * 120.00301 * 179.97438 * 2 1 3 12 12 O 1.21872 * 120.00002 * 180.02562 * 11 2 1 13 13 C 1.41190 * 119.99688 * 0.02562 * 11 2 1 14 14 C 1.35996 * 120.00057 * 179.97438 * 13 11 2 15 15 C 1.41208 * 120.00395 * 180.02562 * 14 13 11 16 16 C 1.38347 * 125.89111 * 180.02562 * 15 14 13 17 17 C 1.39650 * 106.81326 * 180.02562 * 16 15 14 18 18 C 1.37728 * 106.99598 * 0.02562 * 17 16 15 19 19 C 1.47524 * 125.71542 * 179.97438 * 18 17 16 20 20 C 1.39737 * 120.17016 * 309.71338 * 19 18 17 21 21 C 1.37883 * 119.85805 * 179.73202 * 20 19 18 22 22 C 1.38440 * 120.21775 * 0.57249 * 21 20 19 23 23 C 1.38298 * 120.35231 * 359.70579 * 22 21 20 24 24 C 1.38202 * 120.13010 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.10985 * 180.02562 * 24 23 22 26 26 O 1.34495 * 108.56226 * 359.97438 * 18 17 16 27 27 H 1.08999 * 109.47105 * 265.00319 * 1 2 3 28 28 H 1.08994 * 109.47076 * 25.00765 * 1 2 3 29 29 H 1.09002 * 109.46633 * 145.00468 * 1 2 3 30 30 H 0.96997 * 120.00771 * 179.97438 * 6 5 3 31 31 H 1.08000 * 120.00496 * 0.02562 * 13 11 2 32 32 H 1.08000 * 119.99447 * 0.02562 * 14 13 11 33 33 H 1.08002 * 126.58881 * 0.02562 * 16 15 14 34 34 H 1.08007 * 126.49801 * 180.02562 * 17 16 15 35 35 H 1.07998 * 120.07030 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.88645 * 180.28313 * 21 20 19 37 37 H 1.07999 * 119.82297 * 179.72098 * 22 21 20 38 38 H 1.08001 * 119.92926 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1841 0.0000 4 1 3.0625 1.2800 0.5674 5 6 1.6670 2.2650 -0.7305 6 7 2.0448 3.4853 -0.4244 7 14 0.4829 1.9817 -2.1472 8 1 -0.9120 2.1580 -1.6692 9 1 0.7628 2.9593 -3.2294 10 1 0.6567 0.6023 -2.6692 11 6 2.1389 -1.1672 0.0005 12 8 3.3577 -1.1671 0.0010 13 6 1.4330 -2.3899 0.0005 14 6 2.1130 -3.5677 0.0005 15 6 1.4070 -4.7906 0.0000 16 6 1.9722 -6.0534 0.0004 17 6 0.9170 -6.9682 -0.0010 18 6 -0.2500 -6.2368 -0.0028 19 6 -1.6158 -6.7943 -0.0053 20 6 -1.9727 -7.7742 -0.9355 21 6 -3.2494 -8.2948 -0.9284 22 6 -4.1817 -7.8415 -0.0108 23 6 -3.8397 -6.8679 0.9099 24 6 -2.5623 -6.3407 0.9201 25 9 -2.2285 -5.3900 1.8201 26 8 0.0644 -4.9291 -0.0020 27 1 -0.3633 -0.0895 1.0238 28 1 -0.3633 0.9313 -0.4344 29 1 -0.3633 -0.8419 -0.5894 30 1 1.7093 4.2392 -0.9341 31 1 0.3530 -2.3900 -0.0003 32 1 3.1929 -3.5676 0.0009 33 1 3.0267 -6.2867 0.0016 34 1 1.0004 -8.0451 -0.0007 35 1 -1.2486 -8.1263 -1.6552 36 1 -3.5243 -9.0555 -1.6442 37 1 -5.1812 -8.2505 -0.0139 38 1 -4.5723 -6.5195 1.6230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491353656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:17 Heat of formation + Delta-G solvation = -0.607219 kcal Electronic energy + Delta-G solvation = -24598.553330 eV Core-core repulsion = 20709.625358 eV Total energy + Delta-G solvation = -3888.927972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.11754 -42.42791 -39.19076 -38.89650 -35.07543 -33.76477 -33.29345 -32.23681 -31.75854 -30.94909 -28.25628 -26.53914 -25.58180 -23.89967 -23.14270 -21.97683 -21.61164 -20.24889 -18.39004 -18.09693 -17.29754 -17.12828 -16.74292 -16.54344 -15.96571 -15.70565 -15.62027 -15.26612 -14.72980 -14.34113 -14.17750 -13.89346 -13.49992 -13.19714 -13.03722 -12.80457 -12.74470 -12.62913 -12.40203 -12.29287 -12.20644 -11.94976 -11.52917 -11.36204 -10.87772 -10.42400 -10.35705 -10.03795 -9.98697 -9.39915 -9.17652 -9.09094 -8.59436 -7.84088 -7.56495 -6.53877 -4.00340 0.32436 0.77975 0.90524 2.13548 2.73680 2.89037 3.01451 3.18358 3.22912 3.24412 3.84338 4.04941 4.26989 4.31102 4.35109 4.47189 4.54762 4.77710 4.84379 4.89740 4.93944 5.11245 5.30373 5.46055 5.57098 5.61020 5.67477 5.74461 5.77097 5.78352 5.85992 5.94047 6.07013 6.20205 6.24983 6.30680 6.42306 6.53299 6.67435 7.13439 7.44397 8.20023 8.43015 8.87751 9.19753 9.72786 10.56920 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003093 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.546020 B = 9050.660855 C = 9919.942614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.451 5.451 3 C -0.306 4.306 4 H 0.110 0.890 5 C 0.057 3.943 6 N -0.850 5.850 7 Si 0.883 3.117 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.262 1.262 11 C 0.471 3.529 12 O -0.576 6.576 13 C -0.147 4.147 14 C -0.064 4.064 15 C 0.044 3.956 16 C -0.194 4.194 17 C -0.173 4.173 18 C 0.003 3.997 19 C -0.048 4.048 20 C -0.066 4.066 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.155 4.155 24 C 0.120 3.880 25 F -0.127 7.127 26 O -0.154 6.154 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.277 0.723 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 -24.675 -0.816 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.128 0.872 5 C -0.150 4.150 6 N -0.485 5.485 7 Si 0.710 3.290 8 H -0.200 1.200 9 H -0.211 1.211 10 H -0.186 1.186 11 C 0.265 3.735 12 O -0.462 6.462 13 C -0.169 4.169 14 C -0.085 4.085 15 C -0.007 4.007 16 C -0.213 4.213 17 C -0.192 4.192 18 C -0.048 4.048 19 C -0.049 4.049 20 C -0.084 4.084 21 C -0.149 4.149 22 C -0.102 4.102 23 C -0.173 4.173 24 C 0.100 3.900 25 F -0.105 7.105 26 O -0.049 6.049 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.379 -24.092 -0.806 27.570 hybrid contribution -0.655 0.229 -0.545 0.883 sum -14.034 -23.863 -1.351 27.717 Atomic orbital electron populations 1.22130 0.83200 1.01758 1.01500 1.43731 1.04285 1.06205 1.62775 1.19177 1.10004 0.85490 1.28679 0.87211 1.25473 0.97548 0.94701 0.97310 1.69727 1.42785 0.98259 1.37754 0.86848 0.80079 0.79378 0.82662 1.19994 1.21099 1.18616 1.16750 0.87990 0.83859 0.84917 1.90712 1.13234 1.87259 1.54985 1.22585 1.00464 0.94048 0.99760 1.20488 0.99729 0.87489 1.00829 1.20129 0.79281 0.95888 1.05382 1.22087 1.00421 0.90759 1.08050 1.21806 0.90499 1.00259 1.06630 1.20426 0.93285 0.81040 1.10053 1.17830 0.89323 0.99636 0.98072 1.21148 0.96814 0.94467 0.96006 1.21142 0.92985 1.00973 0.99799 1.21163 0.99969 0.95285 0.93804 1.21140 0.94868 0.99423 1.01918 1.17913 0.93544 0.89240 0.89281 1.91564 1.92878 1.61230 1.64849 1.84183 1.24322 1.26124 1.70319 0.92456 0.91441 0.92297 0.91212 0.86176 0.82271 0.82532 0.83034 0.84341 0.84688 0.84669 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 8.59 59.85 0.51 1.70 16 2 N -0.45 -11.42 2.58 -125.61 -0.32 -11.74 16 3 C -0.31 -8.82 9.36 -15.06 -0.14 -8.96 16 4 H 0.11 3.52 7.90 -52.49 -0.41 3.11 16 5 C 0.06 1.59 5.29 -17.45 -0.09 1.49 16 6 N -0.85 -24.38 13.95 55.50 0.77 -23.61 16 7 Si 0.88 20.64 24.95 -169.99 -4.24 16.40 16 8 H -0.27 -5.89 6.70 56.52 0.38 -5.52 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.47 11.66 7.39 -15.14 -0.11 11.54 16 12 O -0.58 -16.17 15.97 5.03 0.08 -16.09 16 13 C -0.15 -2.93 8.67 -39.27 -0.34 -3.27 16 14 C -0.06 -1.13 9.38 -39.26 -0.37 -1.50 16 15 C 0.04 0.69 6.82 -38.41 -0.26 0.43 16 16 C -0.19 -2.53 10.86 -39.01 -0.42 -2.96 16 17 C -0.17 -2.05 10.75 -39.24 -0.42 -2.47 16 18 C 0.00 0.04 6.39 -35.98 -0.23 -0.19 16 19 C -0.05 -0.54 5.80 -104.92 -0.61 -1.15 16 20 C -0.07 -0.54 9.71 -39.15 -0.38 -0.92 16 21 C -0.13 -0.81 10.03 -39.64 -0.40 -1.21 16 22 C -0.08 -0.53 10.04 -39.49 -0.40 -0.92 16 23 C -0.15 -1.28 10.01 -39.57 -0.40 -1.68 16 24 C 0.12 1.37 7.29 -38.96 -0.28 1.09 16 25 F -0.13 -1.76 16.80 2.25 0.04 -1.73 16 26 O -0.15 -2.49 10.14 3.31 0.03 -2.46 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.43 3.43 -51.93 -0.18 1.25 16 29 H 0.06 1.05 6.38 -51.93 -0.33 0.72 16 30 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.12 2.17 5.84 -52.49 -0.31 1.86 16 32 H 0.16 2.78 7.46 -52.49 -0.39 2.38 16 33 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -33.88 337.48 -6.63 -40.51 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.74 Total: 2.60 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -4.34 Total: -8.98 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.45 Total: -35.34 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.11 Total: -18.54 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.24 Total: 16.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.88 -6.63 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.904 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds