Wall clock time and date at job start Tue Mar 31 2020 10:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47290 * 2 1 4 4 C 1.53005 * 109.47397 * 239.99729 * 2 1 3 5 5 C 1.50689 * 109.47259 * 174.99974 * 4 2 1 6 6 C 1.38431 * 122.54182 * 90.00345 * 5 4 2 7 7 C 1.33385 * 114.92369 * 179.97438 * 6 5 4 8 8 S 1.75889 * 109.59496 * 359.97438 * 7 6 5 9 9 C 1.33394 * 122.54206 * 269.70677 * 5 4 2 10 10 N 1.46500 * 109.47323 * 119.99942 * 2 1 3 11 11 C 1.34778 * 120.00039 * 275.00039 * 10 2 1 12 12 O 1.21547 * 120.00002 * 0.02562 * 11 10 2 13 13 C 1.47888 * 120.00079 * 179.97438 * 11 10 2 14 14 C 1.39911 * 120.02463 * 359.73100 * 13 11 10 15 15 C 1.38339 * 120.35881 * 179.71409 * 14 13 11 16 16 C 1.37752 * 120.40527 * 0.55719 * 15 14 13 17 17 C 1.40745 * 120.04447 * 359.72174 * 16 15 14 18 18 C 1.41439 * 120.18012 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99881 * 24.42748 * 18 17 16 20 20 C 1.39939 * 119.99821 * 204.43266 * 18 17 16 21 21 N 1.30828 * 120.00160 * 17.89134 * 20 18 17 22 22 Si 1.86808 * 119.99676 * 197.88845 * 20 18 17 23 23 H 1.48494 * 109.46835 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46777 * 120.00015 * 22 20 18 25 25 H 1.48500 * 109.47068 * 239.99921 * 22 20 18 26 26 C 1.38996 * 120.02305 * 180.02562 * 13 11 10 27 27 H 1.09002 * 109.47120 * 299.99847 * 1 2 3 28 28 H 1.09005 * 109.46850 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46909 * 60.00172 * 1 2 3 30 30 H 1.09005 * 109.46895 * 295.00151 * 4 2 1 31 31 H 1.09000 * 109.46918 * 54.99835 * 4 2 1 32 32 H 1.08005 * 122.53254 * 359.95140 * 6 5 4 33 33 H 1.07995 * 125.20413 * 179.97438 * 7 6 5 34 34 H 1.08000 * 125.19611 * 0.03357 * 9 5 4 35 35 H 0.97000 * 120.00214 * 94.99317 * 10 2 1 36 36 H 1.07998 * 119.82339 * 359.97438 * 14 13 11 37 37 H 1.07994 * 119.79465 * 180.25973 * 15 14 13 38 38 H 1.08003 * 119.97754 * 179.74345 * 16 15 14 39 39 H 0.97006 * 119.99400 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.20228 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3799 -1.5522 -0.7334 7 6 5.6830 -1.3092 -0.8821 8 16 5.9053 0.1753 -1.7988 9 6 4.1646 0.3864 -1.9362 10 7 2.0184 -0.6906 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8576 1.1610 2.4118 13 6 2.6396 -0.7155 3.5648 14 6 2.9667 -2.0745 3.5041 15 6 3.4336 -2.7321 4.6280 16 6 3.5710 -2.0598 5.8224 17 6 3.2414 -0.6939 5.9042 18 6 3.3820 -0.0007 7.1290 19 1 4.0787 -0.3560 7.8737 20 6 2.6180 1.1455 7.3758 21 7 1.5471 1.3839 6.6632 22 14 3.1274 2.3351 8.7231 23 1 4.3649 1.8406 9.3781 24 1 3.3807 3.6736 8.1317 25 1 2.0412 2.4366 9.7306 26 6 2.7720 -0.0227 4.7624 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.7517 -1.7716 -1.2055 31 1 1.6055 -0.2618 -2.1370 32 1 4.0067 -2.4147 -0.2011 33 1 6.4796 -1.9291 -0.4982 34 1 3.6747 1.2029 -2.4460 35 1 2.2490 -1.6318 1.1527 36 1 2.8581 -2.6120 2.5737 37 1 3.6873 -3.7802 4.5698 38 1 3.9322 -2.5811 6.6966 39 1 1.0178 2.1787 6.8341 40 1 2.5166 1.0254 4.8150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515979026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:18 Heat of formation + Delta-G solvation = -13.730717 kcal Electronic energy + Delta-G solvation = -23216.771571 eV Core-core repulsion = 19893.487697 eV Total energy + Delta-G solvation = -3323.283874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05703 -39.45511 -38.68888 -36.45689 -35.59956 -33.12444 -31.55302 -31.23671 -30.42426 -27.98572 -27.20393 -24.80436 -23.98553 -22.82640 -21.90282 -21.20436 -19.77915 -19.40142 -18.48222 -17.84687 -17.28850 -16.79907 -16.43482 -16.23965 -15.75989 -15.37718 -15.11980 -14.57090 -14.49490 -14.37246 -14.25068 -13.83645 -13.67480 -13.50145 -13.40675 -13.05830 -12.89607 -12.78652 -12.61809 -12.53158 -12.48379 -12.18508 -11.93661 -11.84281 -11.58525 -11.49013 -11.07959 -10.71246 -10.10436 -9.64726 -9.44913 -9.36721 -9.24417 -8.66795 -6.38049 0.14986 0.41797 0.81765 1.01363 1.13018 1.35353 1.46194 1.51600 1.82268 2.14572 2.19474 2.33701 2.80218 3.71478 3.85761 3.98193 4.09635 4.16732 4.29102 4.40763 4.44304 4.56296 4.61354 4.66500 4.77896 4.83175 4.88772 4.93764 5.08784 5.11250 5.18850 5.21698 5.32454 5.33593 5.50473 5.53369 5.59994 5.69569 5.88553 5.94331 6.06504 6.30063 6.54388 6.74964 6.88425 6.95825 7.40434 8.30032 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003515 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.228510 B = 7964.472127 C = 8248.743505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.058 0.942 4 C -0.056 4.056 5 C -0.106 4.106 6 C -0.137 4.137 7 C -0.219 4.219 8 S 0.072 5.928 9 C -0.223 4.223 10 N -0.702 5.702 11 C 0.561 3.439 12 O -0.592 6.592 13 C -0.138 4.138 14 C -0.194 4.194 15 C -0.095 4.095 16 C -0.219 4.219 17 C 0.067 3.933 18 C -0.499 4.499 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.825 5.825 22 Si 0.981 3.019 23 H -0.251 1.251 24 H -0.271 1.271 25 H -0.263 1.263 26 C -0.133 4.133 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.409 0.591 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.286 0.714 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -6.490 -17.604 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.076 0.924 4 C -0.096 4.096 5 C -0.119 4.119 6 C -0.167 4.167 7 C -0.354 4.354 8 S 0.336 5.664 9 C -0.358 4.358 10 N -0.355 5.355 11 C 0.351 3.649 12 O -0.474 6.474 13 C -0.141 4.141 14 C -0.214 4.214 15 C -0.113 4.113 16 C -0.238 4.238 17 C 0.065 3.935 18 C -0.528 4.528 19 H 0.101 0.899 20 C -0.185 4.185 21 N -0.451 5.451 22 Si 0.801 3.199 23 H -0.174 1.174 24 H -0.196 1.196 25 H -0.188 1.188 26 C -0.154 4.154 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.171 0.829 33 H 0.195 0.805 34 H 0.193 0.807 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.530 -4.697 -18.140 19.068 hybrid contribution -0.986 -0.168 1.468 1.776 sum 2.544 -4.865 -16.672 17.553 Atomic orbital electron populations 1.22153 0.94324 1.03133 1.02051 1.21022 0.94362 0.96540 0.83948 0.92410 1.20657 0.89019 1.03022 0.96890 1.19096 0.97670 0.95358 0.99756 1.20354 0.92445 1.01720 1.02178 1.25864 1.01141 1.01353 1.07016 1.84232 1.06077 1.22471 1.53618 1.25725 0.96194 1.04718 1.09164 1.45795 1.67044 1.14225 1.08437 1.18693 0.76203 0.85792 0.84228 1.90661 1.52659 1.18149 1.85936 1.19829 1.05437 0.95809 0.93023 1.20828 1.08633 0.92506 0.99427 1.20921 0.98585 0.99589 0.92220 1.21401 1.10337 0.93685 0.98424 1.17937 0.90437 0.92206 0.92898 1.19891 1.21408 1.09644 1.01904 0.89895 1.26840 0.92848 0.99260 0.99528 1.69904 1.11756 1.25590 1.37855 0.85179 0.79814 0.77373 0.77505 1.17408 1.19630 1.18756 1.21438 1.02987 0.99390 0.91594 0.95519 0.90589 0.89166 0.87971 0.87021 0.82885 0.80529 0.80669 0.75269 0.84544 0.84327 0.87493 0.90386 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.48 71.98 0.68 -2.96 16 2 C 0.15 3.67 2.56 44.99 0.12 3.78 16 3 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 4 C -0.06 -0.92 5.01 29.85 0.15 -0.77 16 5 C -0.11 -2.17 4.83 -20.92 -0.10 -2.27 16 6 C -0.14 -2.82 9.53 21.22 0.20 -2.61 16 7 C -0.22 -4.57 11.23 66.72 0.75 -3.82 16 8 S 0.07 1.53 23.34 -56.49 -1.32 0.21 16 9 C -0.22 -4.63 10.98 66.72 0.73 -3.89 16 10 N -0.70 -21.45 4.54 -445.36 -2.02 -23.47 16 11 C 0.56 24.72 7.74 86.80 0.67 25.39 16 12 O -0.59 -31.27 16.00 -3.86 -0.06 -31.33 16 13 C -0.14 -6.55 5.87 -20.14 -0.12 -6.66 16 14 C -0.19 -7.52 9.55 22.70 0.22 -7.30 16 15 C -0.10 -3.74 10.01 22.18 0.22 -3.51 16 16 C -0.22 -10.27 9.78 22.77 0.22 -10.05 16 17 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 18 C -0.50 -27.63 9.05 23.47 0.21 -27.42 16 19 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 20 C 0.03 1.60 5.14 85.25 0.44 2.04 16 21 N -0.83 -46.85 10.96 21.82 0.24 -46.61 16 22 Si 0.98 40.33 29.60 68.60 2.03 42.36 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 26 C -0.13 -7.53 8.24 23.01 0.19 -7.34 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.25 8.13 -2.38 -0.02 1.24 16 31 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.15 2.58 7.89 -2.91 -0.02 2.55 16 33 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.41 10.03 6.23 -92.71 -0.58 9.45 16 36 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.29 14.92 8.30 -92.70 -0.77 14.15 16 40 H 0.10 6.07 5.74 -2.91 -0.02 6.05 16 Total: -1.00 -72.21 353.25 3.82 -68.39 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.48 Total: 34.25 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 4.47 Total: -43.80 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.78 Total: -70.09 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.06 Total: -31.33 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.21 kcal Total: -72.21 3.82 -68.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515979026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.664 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds