Wall clock time and date at job start Tue Mar 31 2020 11:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42096 * 104.27928 * 206.07166 * 14 12 2 16 16 O 1.42099 * 104.27860 * 333.92868 * 14 12 2 17 17 C 1.81400 * 104.44848 * 89.99927 * 14 12 2 18 18 C 1.53000 * 109.47425 * 179.97438 * 17 14 12 19 19 C 1.50700 * 109.47405 * 179.97438 * 18 17 14 20 20 C 1.38217 * 120.00996 * 100.00284 * 19 18 17 21 21 C 1.38224 * 120.02672 * 179.97438 * 20 19 18 22 22 C 1.38262 * 120.04852 * 0.02562 * 21 20 19 23 23 C 1.38174 * 120.02685 * 0.02562 * 22 21 20 24 24 C 1.38432 * 120.01395 * 279.72744 * 19 18 17 25 25 F 1.35099 * 120.02625 * 359.97438 * 24 19 18 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09001 * 109.47358 * 300.00407 * 17 14 12 34 34 H 1.09006 * 109.47352 * 60.00037 * 17 14 12 35 35 H 1.09001 * 109.47280 * 300.00571 * 18 17 14 36 36 H 1.08998 * 109.46738 * 60.00091 * 18 17 14 37 37 H 1.07998 * 119.99093 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97689 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.98613 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.01353 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.7432 -0.5609 -3.5157 16 8 2.6121 1.4798 -2.1233 17 6 4.6648 -0.1728 -1.7059 18 6 5.6505 0.5288 -2.6425 19 6 7.0582 0.2908 -2.1600 20 6 7.8400 -0.6784 -2.7599 21 6 9.1314 -0.8967 -2.3179 22 6 9.6424 -0.1462 -1.2752 23 6 8.8623 0.8225 -0.6733 24 6 7.5707 1.0466 -1.1196 25 9 6.8096 1.9984 -0.5366 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 4.7757 0.2250 -0.6971 34 1 4.8701 -1.2433 -1.6989 35 1 5.5395 0.1307 -3.6511 36 1 5.4455 1.5993 -2.6498 37 1 7.4418 -1.2655 -3.5742 38 1 9.7414 -1.6544 -2.7870 39 1 10.6515 -0.3179 -0.9304 40 1 9.2616 1.4083 0.1415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594758210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:56 Heat of formation + Delta-G solvation = -115.692918 kcal Electronic energy + Delta-G solvation = -24741.125114 eV Core-core repulsion = 20982.650603 eV Total energy + Delta-G solvation = -3758.474511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.94222 -40.06441 -38.21321 -37.88860 -36.97345 -35.49118 -34.51503 -31.56218 -30.94496 -30.62004 -27.28196 -27.01615 -25.51860 -23.73967 -22.65953 -22.17530 -19.75841 -18.73115 -18.49563 -18.24932 -17.62774 -17.57124 -17.13211 -16.61580 -16.55229 -16.46558 -15.40038 -15.15437 -15.02591 -14.85422 -14.45248 -14.34788 -14.22456 -13.99750 -13.70303 -13.40589 -13.21366 -13.14153 -13.03174 -12.96444 -12.83218 -12.71007 -12.69557 -12.43946 -12.21139 -12.14293 -12.08824 -11.88737 -11.60170 -11.12537 -10.50111 -9.95681 -9.68546 -9.54534 -8.10022 -6.25822 -0.67981 0.16515 0.24905 1.45064 1.45654 1.53116 1.79153 2.43826 2.59887 2.89499 3.18098 3.20361 3.31578 3.53379 3.65745 3.68512 3.92546 4.11486 4.13365 4.32840 4.35097 4.40911 4.58930 4.70930 4.79468 4.82649 4.95298 4.97398 5.02283 5.10830 5.16163 5.22140 5.28027 5.38210 5.45892 5.60026 5.69280 5.85260 5.95033 6.08818 6.27802 6.84040 7.44193 8.94430 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005031 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.688366 B = 5564.252793 C = 6904.828364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.025 0.975 4 C -0.535 4.535 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.289 1.289 10 H -0.266 1.266 11 H -0.273 1.273 12 N -0.994 5.994 13 C 0.097 3.903 14 S 2.611 3.389 15 O -0.980 6.980 16 O -1.000 7.000 17 C -0.606 4.606 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.091 4.091 23 C -0.162 4.162 24 C 0.065 3.935 25 F -0.157 7.157 26 H 0.069 0.931 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.145 -6.577 -9.207 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.043 0.957 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.214 1.214 10 H -0.191 1.191 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.048 4.048 14 S 2.708 3.292 15 O -0.971 6.971 16 O -0.990 6.990 17 C -0.737 4.737 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.108 4.108 23 C -0.181 4.181 24 C 0.046 3.954 25 F -0.136 7.136 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.177 0.823 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.664 -5.947 -9.803 20.227 hybrid contribution -0.018 0.165 1.816 1.824 sum 16.646 -5.782 -7.987 19.347 Atomic orbital electron populations 1.21920 0.97964 0.99986 0.99793 1.18411 0.92052 0.91551 0.81446 0.95699 1.21662 1.31853 1.13289 0.90667 0.90910 1.25724 0.95174 0.95606 1.01946 1.70022 1.37307 1.23940 1.24395 0.85615 0.78624 0.78906 0.78512 1.21443 1.19070 1.19836 1.57302 1.64661 1.22587 1.38661 1.21429 1.00778 0.80349 1.02229 1.04688 0.77599 0.73231 0.73679 1.93502 1.85157 1.75422 1.42996 1.93521 1.82478 1.36354 1.86680 1.30515 1.20239 1.12244 1.10738 1.20354 0.90740 1.01238 0.99309 1.19786 0.96187 0.99009 0.97490 1.21361 0.94192 0.95527 0.99775 1.21652 0.95322 1.00166 0.96866 1.21452 1.00805 0.93490 0.95086 1.21441 0.92283 1.01708 1.02653 1.18141 0.91135 0.90356 0.95763 1.91481 1.76068 1.62577 1.83435 0.91235 0.96467 0.93726 0.92726 0.93274 0.89884 0.90505 0.85834 0.82297 0.86513 0.90503 0.82359 0.81773 0.81877 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 8.97 71.98 0.65 -6.14 16 2 C 0.27 13.56 2.57 44.24 0.11 13.67 16 3 H 0.03 1.43 6.87 -2.39 -0.02 1.42 16 4 C -0.54 -27.50 7.99 25.60 0.20 -27.30 16 5 H 0.07 3.50 7.33 -2.91 -0.02 3.48 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.97 11.32 21.45 0.24 -51.73 16 8 Si 0.96 41.78 29.54 68.60 2.03 43.80 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.99 -40.96 2.99 -520.45 -1.56 -42.51 16 13 C 0.10 3.29 9.19 127.77 1.17 4.46 16 14 S 2.61 99.32 5.37 -56.49 -0.30 99.01 16 15 O -0.98 -37.30 17.09 -127.65 -2.18 -39.48 16 16 O -1.00 -47.02 16.57 -127.65 -2.12 -49.13 16 17 C -0.61 -18.24 6.16 71.98 0.44 -17.79 16 18 C -0.08 -2.05 5.08 29.85 0.15 -1.90 16 19 C -0.12 -2.96 5.14 -19.82 -0.10 -3.07 16 20 C -0.09 -1.54 9.67 22.26 0.22 -1.33 16 21 C -0.12 -1.61 10.04 22.27 0.22 -1.39 16 22 C -0.09 -1.31 10.04 22.26 0.22 -1.08 16 23 C -0.16 -3.35 10.03 22.31 0.22 -3.13 16 24 C 0.07 1.77 7.24 22.37 0.16 1.93 16 25 F -0.16 -5.27 16.66 44.97 0.75 -4.52 16 26 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 27 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.04 2.03 7.67 -2.39 -0.02 2.01 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.22 7.79 -2.38 -0.02 2.20 16 32 H 0.08 2.63 7.02 -2.39 -0.02 2.61 16 33 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 34 H 0.16 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.12 2.38 8.01 -2.39 -0.02 2.36 16 36 H 0.08 2.19 7.94 -2.39 -0.02 2.17 16 37 H 0.16 1.85 8.04 -2.91 -0.02 1.82 16 38 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -71.15 350.06 2.02 -69.13 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.03 Total: 17.22 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 4.13 Total: -41.79 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -1.32 Total: -94.24 kcal Atomic # 8 Polarization: -84.32 SS G_CDS: -4.30 Total: -88.61 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.75 Total: -4.52 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 99.32 SS G_CDS: -0.30 Total: 99.01 kcal Total: -71.15 2.02 -69.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594758210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.563 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds