Wall clock time and date at job start Tue Mar 31 2020 10:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47042 * 2 1 4 4 H 1.09007 * 109.47480 * 304.25673 * 3 2 1 5 5 C 1.50700 * 109.47300 * 184.25956 * 3 2 1 6 6 H 1.08001 * 120.00297 * 245.50527 * 5 3 2 7 7 C 1.37883 * 119.99997 * 65.49790 * 5 3 2 8 8 N 1.31515 * 119.99997 * 9.34652 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 189.34527 * 7 5 3 10 10 H 1.48495 * 109.46973 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47193 * 300.00400 * 9 7 5 12 12 H 1.48500 * 109.46958 * 60.00161 * 9 7 5 13 13 N 1.46501 * 109.47300 * 64.25675 * 3 2 1 14 14 S 1.65599 * 120.00284 * 215.44057 * 13 3 2 15 15 O 1.42094 * 104.27543 * 180.37165 * 14 13 3 16 16 O 1.42098 * 104.27503 * 308.22888 * 14 13 3 17 17 C 1.81401 * 104.44880 * 64.30038 * 14 13 3 18 18 C 1.52998 * 109.47205 * 184.51985 * 17 14 13 19 19 C 1.50698 * 109.47123 * 180.02562 * 18 17 14 20 20 C 1.38249 * 119.97431 * 269.72674 * 19 18 17 21 21 C 1.38195 * 120.02375 * 179.72517 * 20 19 18 22 22 C 1.38460 * 119.97535 * 0.57153 * 21 20 19 23 23 F 1.35098 * 120.02661 * 179.67574 * 22 21 20 24 24 C 1.38461 * 119.94675 * 359.70485 * 22 21 20 25 25 C 1.38192 * 119.97620 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46897 * 184.54008 * 1 2 3 27 27 H 1.09002 * 109.47126 * 304.53969 * 1 2 3 28 28 H 1.08996 * 109.47524 * 64.54474 * 1 2 3 29 29 H 1.09003 * 109.46530 * 240.00303 * 2 1 3 30 30 H 1.08996 * 109.47105 * 120.00626 * 2 1 3 31 31 H 0.97003 * 119.99567 * 357.05052 * 8 7 5 32 32 H 0.97001 * 119.99489 * 35.44240 * 13 3 2 33 33 H 1.09004 * 109.47000 * 304.52109 * 17 14 13 34 34 H 1.08994 * 109.47239 * 64.51813 * 17 14 13 35 35 H 1.09000 * 109.46804 * 300.00221 * 18 17 14 36 36 H 1.09007 * 109.47169 * 60.00045 * 18 17 14 37 37 H 1.07999 * 119.98616 * 359.97438 * 20 19 18 38 38 H 1.08008 * 120.00889 * 180.24998 * 21 20 19 39 39 H 1.07998 * 120.01151 * 179.97438 * 24 22 21 40 40 H 1.07998 * 119.99120 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6157 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1055 6 1 4.1419 1.8109 0.7150 7 6 4.1545 0.9763 -1.2496 8 7 3.4339 0.7023 -2.3151 9 14 6.0061 0.7321 -1.2863 10 1 6.4122 0.2255 -2.6218 11 1 6.6816 2.0280 -1.0226 12 1 6.3965 -0.2508 -0.2438 13 7 1.6372 2.1029 1.2441 14 16 1.2299 3.7080 1.2353 15 8 0.9106 3.9959 2.5896 16 8 2.3246 4.3436 0.5896 17 6 -0.2566 3.7921 0.1990 18 6 -0.6711 5.2539 0.0196 19 6 -1.9063 5.3238 -0.8408 20 6 -1.7865 5.4358 -2.2135 21 6 -2.9186 5.4942 -3.0039 22 6 -4.1732 5.4524 -2.4196 23 9 -5.2806 5.5161 -3.1909 24 6 -4.2919 5.3460 -1.0442 25 6 -3.1585 5.2810 -0.2564 26 1 -0.3633 -1.0245 0.0813 27 1 -0.3633 0.5827 0.8465 28 1 -0.3634 0.4417 -0.9278 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.4682 0.7882 -2.2827 32 1 1.6090 1.5998 2.0730 33 1 -0.0454 3.3520 -0.7756 34 1 -1.0656 3.2414 0.6788 35 1 -0.8822 5.6940 0.9942 36 1 0.1380 5.8047 -0.4603 37 1 -0.8079 5.4736 -2.6686 38 1 -2.8247 5.5777 -4.0767 39 1 -5.2700 5.3137 -0.5874 40 1 -3.2508 5.1976 0.8164 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594769318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:15 Heat of formation + Delta-G solvation = -134.426737 kcal Electronic energy + Delta-G solvation = -24254.720549 eV Core-core repulsion = 20495.433679 eV Total energy + Delta-G solvation = -3759.286871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92784 -40.23651 -38.27223 -37.85340 -36.91599 -35.23544 -34.18915 -32.33536 -32.12967 -30.34502 -28.03892 -25.39561 -24.96817 -24.05929 -22.29342 -22.08586 -20.25683 -19.18886 -18.78304 -18.56392 -17.53898 -17.41874 -17.03863 -16.61582 -16.39811 -16.09045 -15.65635 -15.22567 -15.09479 -14.92594 -14.81240 -14.47751 -14.20739 -14.12178 -14.02278 -13.32485 -13.18721 -13.07660 -13.04941 -12.90379 -12.83976 -12.59127 -12.45101 -12.38433 -11.94709 -11.92667 -11.90727 -11.65170 -11.57391 -11.26902 -10.42721 -10.10853 -9.86421 -9.58404 -8.52182 -6.24645 -0.64642 0.08623 0.23525 1.56213 1.61776 1.81258 1.92136 2.51391 2.60450 2.88291 3.20645 3.25579 3.34890 3.63547 3.67667 3.74321 3.92377 3.95218 4.27247 4.28115 4.31384 4.39566 4.44385 4.52192 4.64590 4.69756 4.81112 4.95601 4.99084 5.02204 5.12621 5.19733 5.22032 5.22823 5.50285 5.54369 5.59653 5.88059 6.07397 6.23987 6.44991 6.70031 7.47214 8.84498 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003696 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.797409 B = 7573.961615 C = 8144.526511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.271 3.729 4 H 0.023 0.977 5 C -0.616 4.616 6 H 0.038 0.962 7 C -0.018 4.018 8 N -0.930 5.930 9 Si 1.099 2.901 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 N -1.101 6.101 14 S 2.611 3.389 15 O -0.995 6.995 16 O -0.994 6.994 17 C -0.606 4.606 18 C -0.078 4.078 19 C -0.088 4.088 20 C -0.096 4.096 21 C -0.156 4.156 22 C 0.075 3.925 23 F -0.149 7.149 24 C -0.151 4.151 25 C -0.086 4.086 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.264 0.736 32 H 0.413 0.587 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.016 6.677 2.989 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.165 3.835 4 H 0.041 0.959 5 C -0.656 4.656 6 H 0.057 0.943 7 C -0.218 4.218 8 N -0.567 5.567 9 Si 0.923 3.077 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.860 5.860 14 S 2.707 3.293 15 O -0.986 6.986 16 O -0.984 6.984 17 C -0.738 4.738 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.114 4.114 21 C -0.175 4.175 22 C 0.056 3.944 23 F -0.128 7.128 24 C -0.169 4.169 25 C -0.104 4.104 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.154 0.846 34 H 0.180 0.820 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.294 7.010 2.283 16.083 hybrid contribution -1.604 -0.130 0.479 1.679 sum -15.898 6.880 2.762 17.541 Atomic orbital electron populations 1.21821 0.94817 1.02024 1.01769 1.21775 0.95821 0.97571 1.01130 1.18386 0.93339 0.90883 0.80874 0.95938 1.22633 0.93494 1.45181 1.04265 0.94325 1.26793 1.10009 0.93414 0.91631 1.70938 1.08042 1.48440 1.29310 0.83142 0.71031 0.77081 0.76425 1.20642 1.21077 1.19581 1.55222 1.83603 1.30031 1.17131 1.04631 0.77039 0.73098 0.74519 1.93509 1.86593 1.84055 1.34395 1.93576 1.50997 1.75614 1.78255 1.30505 1.20414 1.05849 1.17016 1.20422 0.97052 0.91998 1.02157 1.19740 0.94589 1.00787 0.93809 1.21195 0.99123 0.97908 0.93209 1.21327 0.90900 1.03339 1.01928 1.17999 0.82615 1.04088 0.89662 1.91476 1.51826 1.93991 1.75478 1.21389 1.01397 1.02812 0.91335 1.21243 0.90273 0.97315 1.01596 0.92091 0.91451 0.93211 0.93295 0.92760 0.92504 0.75244 0.84627 0.81960 0.87432 0.89135 0.84169 0.83585 0.82623 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.85 71.98 0.71 -3.60 16 2 C -0.12 -4.83 5.24 30.59 0.16 -4.67 16 3 C 0.27 11.98 1.69 44.24 0.07 12.05 16 4 H 0.02 1.04 6.37 -2.38 -0.02 1.03 16 5 C -0.62 -33.30 8.76 25.60 0.22 -33.08 16 6 H 0.04 2.19 7.83 -2.91 -0.02 2.16 16 7 C -0.02 -1.01 5.17 84.66 0.44 -0.57 16 8 N -0.93 -52.77 13.04 21.45 0.28 -52.49 16 9 Si 1.10 50.07 29.91 68.60 2.05 52.12 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 N -1.10 -40.56 4.68 -172.52 -0.81 -41.36 16 14 S 2.61 89.40 5.38 -56.49 -0.30 89.10 16 15 O -1.00 -35.92 18.08 -127.65 -2.31 -38.23 16 16 O -0.99 -44.68 17.83 -127.65 -2.28 -46.95 16 17 C -0.61 -14.35 5.96 71.98 0.43 -13.92 16 18 C -0.08 -1.60 5.35 29.85 0.16 -1.44 16 19 C -0.09 -1.70 5.13 -19.86 -0.10 -1.80 16 20 C -0.10 -1.94 9.70 22.26 0.22 -1.73 16 21 C -0.16 -3.08 10.03 22.31 0.22 -2.85 16 22 C 0.08 1.52 7.30 22.38 0.16 1.68 16 23 F -0.15 -3.23 17.27 44.97 0.78 -2.45 16 24 C -0.15 -2.52 10.03 22.31 0.22 -2.29 16 25 C -0.09 -1.40 9.70 22.26 0.22 -1.18 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.67 7.61 -2.39 -0.02 1.65 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 2.20 6.39 -2.39 -0.02 2.19 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.26 14.58 6.06 -92.71 -0.56 14.02 16 32 H 0.41 13.57 8.80 -96.74 -0.85 12.72 16 33 H 0.14 3.37 7.29 -2.39 -0.02 3.35 16 34 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.09 1.92 8.08 -2.38 -0.02 1.90 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -72.11 352.73 0.96 -71.16 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.41 Total: 22.53 kcal Atomic # 6 Polarization: -56.55 SS G_CDS: 3.14 Total: -53.42 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -0.53 Total: -93.85 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -4.58 Total: -85.19 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Atomic # 16 Polarization: 89.40 SS G_CDS: -0.30 Total: 89.10 kcal Total: -72.11 0.96 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594769318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.270 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds