Wall clock time and date at job start Tue Mar 31 2020 11:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47196 * 36.02885 * 3 2 1 5 5 N 1.46898 * 109.46856 * 179.53712 * 4 3 2 6 6 C 1.46897 * 110.99957 * 288.00318 * 5 4 3 7 7 C 1.50705 * 109.46921 * 160.36769 * 6 5 4 8 8 H 1.08000 * 120.00258 * 4.89510 * 7 6 5 9 9 C 1.37884 * 119.99438 * 184.90161 * 7 6 5 10 10 N 1.31516 * 119.99317 * 179.97438 * 9 7 6 11 11 Si 1.86789 * 120.00331 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47279 * 90.00422 * 11 9 7 13 13 H 1.48506 * 109.47413 * 210.00317 * 11 9 7 14 14 H 1.48505 * 109.47653 * 330.00697 * 11 9 7 15 15 C 1.46902 * 110.99780 * 164.05095 * 5 4 3 16 16 C 1.53008 * 109.46812 * 293.95138 * 15 5 4 17 17 C 1.50701 * 109.46786 * 179.97438 * 16 15 5 18 18 N 1.28736 * 121.08015 * 90.02350 * 17 16 15 19 19 S 1.69398 * 108.98133 * 179.97438 * 18 17 16 20 20 C 1.76512 * 96.11974 * 0.02562 * 19 18 17 21 21 C 1.38787 * 133.55406 * 180.02562 * 20 19 18 22 22 C 1.36718 * 119.75286 * 179.97438 * 21 20 19 23 23 C 1.38971 * 120.15443 * 0.02562 * 22 21 20 24 24 C 1.36041 * 121.15878 * 359.97215 * 23 22 21 25 25 C 1.40806 * 105.51901 * 0.22935 * 20 19 18 26 26 H 1.08996 * 109.47151 * 276.02529 * 3 2 1 27 27 H 1.09007 * 109.47064 * 156.02326 * 3 2 1 28 28 H 1.08998 * 109.47244 * 59.53294 * 4 3 2 29 29 H 1.08998 * 109.46525 * 299.53429 * 4 3 2 30 30 H 1.09000 * 109.46826 * 280.36090 * 6 5 4 31 31 H 1.08998 * 109.47044 * 40.36197 * 6 5 4 32 32 H 0.96997 * 119.99463 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.47108 * 173.95399 * 15 5 4 34 34 H 1.08998 * 109.47531 * 53.94995 * 15 5 4 35 35 H 1.08997 * 109.47072 * 60.00238 * 16 15 5 36 36 H 1.08995 * 109.47050 * 299.99690 * 16 15 5 37 37 H 1.08002 * 120.12097 * 359.97438 * 21 20 19 38 38 H 1.07996 * 119.92135 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.42214 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.89556 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1657 -0.8485 5 7 4.5875 -1.1584 -0.8575 6 6 5.1035 -0.0481 -1.6692 7 6 6.5339 0.2318 -1.2860 8 1 7.0369 -0.4057 -0.5741 9 6 7.2002 1.3021 -1.8444 10 7 8.4483 1.5466 -1.5097 11 14 6.3304 2.4044 -3.0762 12 1 5.6588 3.5167 -2.3571 13 1 7.3230 2.9600 -4.0308 14 1 5.3175 1.6130 -3.8200 15 6 5.1174 -2.4452 -1.3281 16 6 4.7650 -3.5411 -0.3202 17 6 5.3081 -4.8613 -0.8034 18 7 6.4907 -5.2524 -0.4783 19 16 6.7837 -6.7652 -1.1820 20 6 5.2159 -6.9081 -1.9803 21 6 4.6370 -7.8804 -2.7839 22 6 3.3698 -7.6980 -3.2636 23 6 2.6636 -6.5433 -2.9485 24 6 3.2099 -5.5764 -2.1628 25 6 4.5181 -5.7294 -1.6540 26 1 2.9714 -0.1070 1.0219 27 1 2.9709 0.9399 -0.4176 28 1 2.7484 -1.0624 -1.8685 29 1 2.7625 -2.1053 -0.4261 30 1 5.0560 -0.3168 -2.7245 31 1 4.4993 0.8419 -1.4933 32 1 8.9172 2.2993 -1.9028 33 1 6.2008 -2.3775 -1.4273 34 1 4.6783 -2.6869 -2.2960 35 1 3.6817 -3.6088 -0.2210 36 1 5.2042 -3.2995 0.6476 37 1 5.1856 -8.7778 -3.0293 38 1 2.9166 -8.4530 -3.8888 39 1 1.6632 -6.4116 -3.3335 40 1 2.6426 -4.6873 -1.9305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595396291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:31 Heat of formation + Delta-G solvation = 80.590448 kcal Electronic energy + Delta-G solvation = -22756.477719 eV Core-core repulsion = 19469.576669 eV Total energy + Delta-G solvation = -3286.901050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14899 -38.02293 -36.93058 -36.16198 -32.70058 -32.09157 -31.30143 -30.61956 -30.13166 -27.26582 -24.42103 -23.45463 -23.05806 -22.41079 -20.18424 -19.72414 -18.64911 -17.43284 -16.93469 -16.51855 -15.76247 -15.46160 -15.17529 -14.85641 -14.77922 -14.38048 -14.17020 -14.00578 -13.68281 -13.26511 -13.01535 -12.68894 -12.59747 -12.41549 -12.30798 -12.18335 -12.00154 -11.74694 -11.47411 -11.26733 -10.98331 -10.92279 -10.73276 -10.54045 -10.45910 -10.20371 -9.98823 -9.88646 -9.36701 -9.16558 -8.60817 -7.97616 -7.62851 -6.08758 -4.06736 0.35557 0.94821 1.33685 1.78336 2.02505 2.82477 2.88550 3.23452 3.31749 3.33118 3.38407 3.97697 4.16342 4.33217 4.36972 4.62264 4.72184 4.93097 5.02204 5.09875 5.22074 5.23087 5.24073 5.31206 5.37133 5.48690 5.61222 5.62212 5.76921 5.83549 5.94302 5.97732 6.11459 6.12660 6.25705 6.42809 6.47045 6.63050 6.72621 6.80311 7.48303 7.62281 7.71698 7.82068 8.57579 9.02387 9.51941 11.04358 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.004035 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.593067 B = 6937.731254 C = 8600.170761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.218 3.782 3 C -0.029 4.029 4 C 0.052 3.948 5 N -0.521 5.521 6 C 0.160 3.840 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.869 3.131 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.074 3.926 16 C -0.056 4.056 17 C 0.167 3.833 18 N -0.425 5.425 19 S 0.169 5.831 20 C -0.135 4.135 21 C -0.083 4.083 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.047 4.047 25 C -0.126 4.126 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.035 0.965 29 H 0.075 0.925 30 H -0.008 1.008 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -17.233 -2.103 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.078 4.078 5 N -0.245 5.245 6 C 0.034 3.966 7 C -0.548 4.548 8 H 0.101 0.899 9 C -0.132 4.132 10 N -0.535 5.535 11 Si 0.697 3.303 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.055 4.055 16 C -0.099 4.099 17 C -0.023 4.023 18 N -0.235 5.235 19 S 0.325 5.675 20 C -0.255 4.255 21 C -0.106 4.106 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.069 4.069 25 C -0.138 4.138 26 H 0.138 0.862 27 H 0.132 0.868 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.626 -17.417 -0.832 19.918 hybrid contribution -1.690 0.992 -2.113 2.882 sum -11.316 -16.426 -2.945 20.162 Atomic orbital electron populations 1.81180 1.13216 1.09374 1.09663 1.29442 0.95448 0.92599 0.92462 1.19394 0.80092 1.02560 1.04893 1.22029 0.90888 0.97091 0.97795 1.61886 1.03551 1.03416 1.55634 1.20277 0.97139 0.88529 0.90627 1.20998 0.94431 1.13177 1.26158 0.89902 1.24887 0.94745 0.97248 0.96278 1.69889 1.10310 1.29602 1.43741 0.86962 0.79855 0.81524 0.81993 1.20035 1.21220 1.19318 1.21897 1.02616 0.87366 0.93651 1.20641 1.00474 0.87119 1.01641 1.22675 0.89209 0.97253 0.93183 1.75948 1.17708 1.07313 1.22545 1.84894 1.15036 1.19458 1.48115 1.23564 1.00095 0.98614 1.03246 1.19980 0.95579 0.97854 0.97214 1.21036 0.93860 0.97524 0.98309 1.20764 1.00714 0.94139 0.99178 1.20731 0.92137 0.99003 0.95003 1.20270 0.97110 0.94230 1.02212 0.86228 0.86828 0.94663 0.90715 0.99035 0.95312 0.92620 0.88614 0.95494 0.89837 0.88085 0.85046 0.84905 0.85112 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.94 18.54 42.15 0.78 -6.16 16 2 C 0.22 2.80 15.43 -20.76 -0.32 2.48 16 3 C -0.03 -0.34 5.77 -29.52 -0.17 -0.51 16 4 C 0.05 0.66 4.79 -3.82 -0.02 0.65 16 5 N -0.52 -8.77 4.38 -236.07 -1.03 -9.80 16 6 C 0.16 3.35 3.65 -4.98 -0.02 3.33 16 7 C -0.51 -13.29 9.17 -34.44 -0.32 -13.60 16 8 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.45 13.96 55.43 0.77 -25.67 16 11 Si 0.87 20.18 27.37 -169.99 -4.65 15.52 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -5.95 6.69 56.52 0.38 -5.57 16 15 C 0.07 1.20 4.77 -3.82 -0.02 1.18 16 16 C -0.06 -0.74 5.45 -27.88 -0.15 -0.89 16 17 C 0.17 2.36 6.13 -81.23 -0.50 1.86 16 18 N -0.42 -6.77 11.84 34.00 0.40 -6.37 16 19 S 0.17 2.27 23.86 -107.50 -2.56 -0.30 16 20 C -0.13 -1.63 6.71 -38.41 -0.26 -1.89 16 21 C -0.08 -0.78 10.02 -39.93 -0.40 -1.18 16 22 C -0.08 -0.66 10.01 -39.86 -0.40 -1.05 16 23 C -0.13 -1.04 9.92 -40.10 -0.40 -1.44 16 24 C -0.05 -0.46 9.72 -39.25 -0.38 -0.85 16 25 C -0.13 -1.57 6.04 -105.14 -0.64 -2.21 16 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.11 1.40 6.53 -51.93 -0.34 1.06 16 28 H 0.04 0.45 8.05 -51.93 -0.42 0.04 16 29 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 30 H -0.01 -0.17 7.40 -51.93 -0.38 -0.56 16 31 H 0.03 0.58 5.40 -51.93 -0.28 0.30 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.10 1.89 7.32 -51.93 -0.38 1.51 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.08 0.88 5.68 -51.93 -0.29 0.58 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.10 7.64 -52.49 -0.40 0.70 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -31.58 352.63 -9.97 -41.55 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.91 Total: -1.80 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -4.08 Total: -12.30 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.92 Total: -48.00 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.65 Total: 15.52 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.56 Total: -0.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.58 -9.97 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.145 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds