Wall clock time and date at job start Tue Mar 31 2020 11:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47196 * 36.02885 * 3 2 1 5 5 N 1.46898 * 109.46856 * 179.53712 * 4 3 2 6 6 C 1.46897 * 110.99957 * 288.00318 * 5 4 3 7 7 C 1.50705 * 109.46921 * 160.36769 * 6 5 4 8 8 H 1.08000 * 120.00258 * 4.89510 * 7 6 5 9 9 C 1.37884 * 119.99438 * 184.90161 * 7 6 5 10 10 N 1.31516 * 119.99317 * 179.97438 * 9 7 6 11 11 Si 1.86789 * 120.00331 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47279 * 90.00422 * 11 9 7 13 13 H 1.48506 * 109.47413 * 210.00317 * 11 9 7 14 14 H 1.48505 * 109.47653 * 330.00697 * 11 9 7 15 15 C 1.46902 * 110.99780 * 164.05095 * 5 4 3 16 16 C 1.53008 * 109.46812 * 293.95138 * 15 5 4 17 17 C 1.50701 * 109.46786 * 179.97438 * 16 15 5 18 18 N 1.28736 * 121.08015 * 90.02350 * 17 16 15 19 19 S 1.69398 * 108.98133 * 179.97438 * 18 17 16 20 20 C 1.76512 * 96.11974 * 0.02562 * 19 18 17 21 21 C 1.38787 * 133.55406 * 180.02562 * 20 19 18 22 22 C 1.36718 * 119.75286 * 179.97438 * 21 20 19 23 23 C 1.38971 * 120.15443 * 0.02562 * 22 21 20 24 24 C 1.36041 * 121.15878 * 359.97215 * 23 22 21 25 25 C 1.40806 * 105.51901 * 0.22935 * 20 19 18 26 26 H 1.08996 * 109.47151 * 276.02529 * 3 2 1 27 27 H 1.09007 * 109.47064 * 156.02326 * 3 2 1 28 28 H 1.08998 * 109.47244 * 59.53294 * 4 3 2 29 29 H 1.08998 * 109.46525 * 299.53429 * 4 3 2 30 30 H 1.09000 * 109.46826 * 280.36090 * 6 5 4 31 31 H 1.08998 * 109.47044 * 40.36197 * 6 5 4 32 32 H 0.96997 * 119.99463 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.47108 * 173.95399 * 15 5 4 34 34 H 1.08998 * 109.47531 * 53.94995 * 15 5 4 35 35 H 1.08997 * 109.47072 * 60.00238 * 16 15 5 36 36 H 1.08995 * 109.47050 * 299.99690 * 16 15 5 37 37 H 1.08002 * 120.12097 * 359.97438 * 21 20 19 38 38 H 1.07996 * 119.92135 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.42214 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.89556 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.1657 -0.8485 5 7 4.5875 -1.1584 -0.8575 6 6 5.1035 -0.0481 -1.6692 7 6 6.5339 0.2318 -1.2860 8 1 7.0369 -0.4057 -0.5741 9 6 7.2002 1.3021 -1.8444 10 7 8.4483 1.5466 -1.5097 11 14 6.3304 2.4044 -3.0762 12 1 5.6588 3.5167 -2.3571 13 1 7.3230 2.9600 -4.0308 14 1 5.3175 1.6130 -3.8200 15 6 5.1174 -2.4452 -1.3281 16 6 4.7650 -3.5411 -0.3202 17 6 5.3081 -4.8613 -0.8034 18 7 6.4907 -5.2524 -0.4783 19 16 6.7837 -6.7652 -1.1820 20 6 5.2159 -6.9081 -1.9803 21 6 4.6370 -7.8804 -2.7839 22 6 3.3698 -7.6980 -3.2636 23 6 2.6636 -6.5433 -2.9485 24 6 3.2099 -5.5764 -2.1628 25 6 4.5181 -5.7294 -1.6540 26 1 2.9714 -0.1070 1.0219 27 1 2.9709 0.9399 -0.4176 28 1 2.7484 -1.0624 -1.8685 29 1 2.7625 -2.1053 -0.4261 30 1 5.0560 -0.3168 -2.7245 31 1 4.4993 0.8419 -1.4933 32 1 8.9172 2.2993 -1.9028 33 1 6.2008 -2.3775 -1.4273 34 1 4.6783 -2.6869 -2.2960 35 1 3.6817 -3.6088 -0.2210 36 1 5.2042 -3.2995 0.6476 37 1 5.1856 -8.7778 -3.0293 38 1 2.9166 -8.4530 -3.8888 39 1 1.6632 -6.4116 -3.3335 40 1 2.6426 -4.6873 -1.9305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595396291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:31 Heat of formation + Delta-G solvation = 61.219549 kcal Electronic energy + Delta-G solvation = -22757.317705 eV Core-core repulsion = 19469.576669 eV Total energy + Delta-G solvation = -3287.741035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00385 -39.21332 -37.87993 -37.29919 -34.68048 -33.13317 -32.16361 -31.51895 -31.40310 -28.85820 -25.51049 -24.61955 -24.05952 -23.49036 -21.53958 -20.79523 -19.50830 -18.94659 -18.42113 -17.32915 -16.97081 -16.32682 -16.15335 -16.07544 -15.90738 -15.79092 -15.14782 -15.09475 -14.82275 -14.51943 -14.33315 -14.07181 -13.81434 -13.64545 -13.34063 -13.15663 -13.06592 -12.81910 -12.58852 -12.52413 -12.39508 -12.17577 -11.97430 -11.84228 -11.71593 -11.51954 -11.33374 -11.32504 -10.77955 -10.67401 -9.95871 -9.01672 -8.90571 -8.18745 -6.21091 -0.48851 0.22621 0.41935 0.78483 1.09973 1.41440 1.43638 1.52595 1.80739 1.88345 2.41629 2.66335 2.86270 3.15804 3.24274 3.48948 3.65992 4.00705 4.03538 4.15178 4.22301 4.22730 4.38234 4.38933 4.42662 4.52001 4.58114 4.72260 4.88337 4.90478 4.96471 5.03999 5.13098 5.15241 5.19318 5.25906 5.30674 5.45427 5.65174 5.65907 5.86751 6.04161 6.35468 6.64375 6.71399 6.88023 7.41930 8.98525 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.004035 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.593067 B = 6937.731254 C = 8600.170761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.246 3.754 3 C -0.023 4.023 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.168 3.832 7 C -0.507 4.507 8 H 0.034 0.966 9 C 0.005 3.995 10 N -0.954 5.954 11 Si 0.941 3.059 12 H -0.259 1.259 13 H -0.294 1.294 14 H -0.245 1.245 15 C 0.084 3.916 16 C -0.044 4.044 17 C 0.165 3.835 18 N -0.476 5.476 19 S 0.142 5.858 20 C -0.145 4.145 21 C -0.094 4.094 22 C -0.070 4.070 23 C -0.122 4.122 24 C -0.054 4.054 25 C -0.150 4.150 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.104 0.896 30 H -0.011 1.011 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 -18.063 -3.903 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.071 4.071 3 C -0.063 4.063 4 C -0.078 4.078 5 N -0.255 5.255 6 C 0.041 3.959 7 C -0.546 4.546 8 H 0.052 0.948 9 C -0.191 4.191 10 N -0.595 5.595 11 Si 0.764 3.236 12 H -0.184 1.184 13 H -0.220 1.220 14 H -0.168 1.168 15 C -0.046 4.046 16 C -0.087 4.087 17 C -0.025 4.025 18 N -0.287 5.287 19 S 0.297 5.703 20 C -0.265 4.265 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.141 4.141 24 C -0.076 4.076 25 C -0.162 4.162 26 H 0.152 0.848 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.169 0.831 38 H 0.189 0.811 39 H 0.183 0.817 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.936 -18.268 -2.619 23.126 hybrid contribution -0.393 1.095 -1.560 1.946 sum -14.329 -17.174 -4.179 22.753 Atomic orbital electron populations 1.81225 1.14354 1.10653 1.11079 1.29389 0.95156 0.91371 0.91169 1.19382 0.79239 1.02032 1.05626 1.22147 0.87639 0.99053 0.98927 1.61685 1.06479 1.02464 1.54834 1.20049 0.94227 0.90860 0.90787 1.21300 0.97135 1.11764 1.24352 0.94786 1.25844 0.95350 0.99266 0.98681 1.70080 1.12586 1.30815 1.46061 0.85816 0.78861 0.79678 0.79205 1.18373 1.22009 1.16840 1.21683 0.99609 0.88050 0.95240 1.20545 1.02412 0.85891 0.99815 1.22958 0.88995 0.97537 0.93007 1.75884 1.19231 1.08926 1.24666 1.84722 1.17300 1.18973 1.49302 1.23741 0.98843 0.99707 1.04255 1.20378 0.96602 0.97940 0.96737 1.21546 0.92719 0.97994 0.96979 1.21243 1.01971 0.93302 0.97619 1.21056 0.91008 1.00405 0.95092 1.20377 0.98437 0.94197 1.03142 0.84763 0.86929 0.93656 0.87835 0.99286 0.93248 0.92805 0.93693 0.94305 0.86191 0.89563 0.83140 0.81119 0.81735 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.70 18.54 20.01 0.37 -13.33 16 2 C 0.25 5.51 15.43 89.44 1.38 6.89 16 3 C -0.02 -0.45 5.77 28.79 0.17 -0.28 16 4 C 0.05 1.13 4.79 86.31 0.41 1.54 16 5 N -0.53 -17.24 4.38 -900.78 -3.95 -21.19 16 6 C 0.17 6.84 3.65 85.56 0.31 7.15 16 7 C -0.51 -27.33 9.17 25.60 0.23 -27.10 16 8 H 0.03 2.11 7.89 -2.91 -0.02 2.09 16 9 C 0.01 0.28 5.47 84.66 0.46 0.75 16 10 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 11 Si 0.94 41.37 27.37 68.60 1.88 43.25 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.24 -9.76 6.69 99.48 0.67 -9.09 16 15 C 0.08 2.71 4.77 86.31 0.41 3.12 16 16 C -0.04 -1.16 5.45 29.85 0.16 -0.99 16 17 C 0.16 4.77 6.13 44.73 0.27 5.04 16 18 N -0.48 -16.28 11.84 -46.33 -0.55 -16.82 16 19 S 0.14 4.04 23.86 -56.49 -1.35 2.69 16 20 C -0.15 -3.43 6.71 23.03 0.15 -3.27 16 21 C -0.09 -1.51 10.02 22.04 0.22 -1.29 16 22 C -0.07 -0.77 10.01 22.09 0.22 -0.55 16 23 C -0.12 -1.40 9.92 21.93 0.22 -1.18 16 24 C -0.05 -0.88 9.72 22.49 0.22 -0.66 16 25 C -0.15 -3.58 6.04 -20.20 -0.12 -3.71 16 26 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.11 2.38 6.53 -2.38 -0.02 2.36 16 28 H 0.05 0.96 8.05 -2.39 -0.02 0.94 16 29 H 0.10 1.71 5.94 -2.39 -0.01 1.69 16 30 H -0.01 -0.44 7.40 -2.39 -0.02 -0.46 16 31 H 0.05 1.84 5.40 -2.39 -0.01 1.83 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.04 1.90 7.32 -2.39 -0.02 1.88 16 34 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 35 H 0.12 2.18 5.68 -2.39 -0.01 2.17 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.15 1.82 7.64 -2.91 -0.02 1.80 16 Total: -1.00 -74.62 352.63 2.46 -72.16 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.02 Total: 6.28 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.73 Total: -14.54 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.82 Total: -109.84 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.35 Total: 2.69 kcal Total: -74.62 2.46 -72.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595396291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.379 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds