Wall clock time and date at job start Tue Mar 31 2020 11:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47029 * 2 1 4 4 C 1.46508 * 120.00079 * 271.03177 * 3 2 1 5 5 C 1.50693 * 109.47248 * 269.99942 * 4 3 2 6 6 C 1.33396 * 125.19825 * 90.00265 * 5 4 3 7 7 C 1.38431 * 114.91696 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.92176 * 359.97438 * 7 6 5 9 9 S 1.75885 * 125.20573 * 269.69660 * 5 4 3 10 10 C 1.34771 * 120.00076 * 91.03756 * 3 2 1 11 11 O 1.21618 * 120.00236 * 184.41824 * 10 3 2 12 12 C 1.47436 * 120.00117 * 4.40958 * 10 3 2 13 13 C 1.39231 * 120.27703 * 57.21785 * 12 10 3 14 14 C 1.38217 * 120.08783 * 180.28161 * 13 12 10 15 15 C 1.38831 * 120.67986 * 359.72121 * 14 13 12 16 16 C 1.37601 * 120.56729 * 359.97438 * 15 14 13 17 17 C 1.40712 * 119.88020 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32299 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99615 * 216.27224 * 18 17 16 20 20 C 1.40271 * 120.00202 * 36.27548 * 18 17 16 21 21 N 1.30620 * 120.00284 * 22.26313 * 20 18 17 22 22 Si 1.86801 * 119.99692 * 202.26711 * 20 18 17 23 23 H 1.48501 * 109.46974 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47480 * 299.99756 * 22 20 18 25 25 H 1.48501 * 109.47093 * 59.99811 * 22 20 18 26 26 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46870 * 299.99764 * 1 2 3 28 28 H 1.08996 * 109.47334 * 59.99611 * 1 2 3 29 29 H 1.09000 * 109.46870 * 240.00236 * 2 1 3 30 30 H 1.08996 * 109.47334 * 120.00389 * 2 1 3 31 31 H 1.09001 * 109.46776 * 30.00489 * 4 3 2 32 32 H 1.08998 * 109.46696 * 150.00319 * 4 3 2 33 33 H 1.07998 * 122.54159 * 359.95511 * 6 5 4 34 34 H 1.07998 * 122.53859 * 180.02562 * 7 6 5 35 35 H 1.08003 * 125.20184 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.95643 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.66119 * 179.73658 * 14 13 12 38 38 H 1.07992 * 119.71659 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.06157 * 180.02562 * 16 15 14 40 40 H 0.97001 * 120.00061 * 5.54625 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2409 2.0795 -1.2686 5 6 3.6566 1.8454 -1.7291 6 6 4.0550 0.8393 -2.5091 7 6 5.4078 0.8290 -2.8023 8 6 6.1079 1.8271 -2.2609 9 16 5.0348 2.8613 -1.3267 10 6 2.2628 2.0095 1.1670 11 8 2.5909 3.1806 1.1700 12 6 2.1325 1.2772 2.4399 13 6 2.8728 0.1191 2.6625 14 6 2.7432 -0.5675 3.8551 15 6 1.8827 -0.1122 4.8448 16 6 1.1427 1.0325 4.6564 17 6 1.2561 1.7501 3.4513 18 6 0.5033 2.9237 3.2487 19 1 0.1106 3.1508 2.2686 20 6 0.2638 3.7971 4.3199 21 7 1.0541 3.7873 5.3598 22 14 -1.1855 4.9741 4.2592 23 1 -1.2188 5.7828 5.5042 24 1 -1.0432 5.8746 3.0871 25 1 -2.4471 4.2000 4.1384 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5472 1.6999 -2.0188 32 1 2.0763 3.1479 -1.1289 33 1 3.3738 0.0894 -2.8832 34 1 5.8619 0.0709 -3.4231 35 1 7.1704 1.9791 -2.3811 36 1 3.5454 -0.2458 1.9004 37 1 3.3176 -1.4674 4.0188 38 1 1.7938 -0.6607 5.7708 39 1 0.4761 1.3795 5.4319 40 1 1.8515 3.2350 5.3578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600950950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:52 Heat of formation + Delta-G solvation = -1.915616 kcal Electronic energy + Delta-G solvation = -23992.788418 eV Core-core repulsion = 20670.016885 eV Total energy + Delta-G solvation = -3322.771532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15836 -39.17471 -38.49167 -36.82626 -35.73696 -32.96167 -31.73340 -31.32893 -30.39698 -27.52566 -26.77042 -24.80933 -24.16856 -23.07539 -22.87748 -20.64400 -20.04383 -19.45623 -18.16232 -17.96274 -17.37958 -16.76100 -16.52687 -16.22731 -15.81132 -15.36428 -15.13777 -14.72261 -14.38401 -14.22729 -14.17750 -13.96473 -13.80741 -13.65170 -13.48193 -13.22562 -13.03858 -12.87114 -12.70115 -12.48569 -12.34893 -12.03483 -12.00501 -11.85241 -11.54871 -11.40096 -10.92743 -10.64081 -9.81559 -9.62057 -9.51425 -9.48578 -9.45844 -9.14670 -6.49488 0.03546 0.56720 0.73616 0.87767 1.19363 1.44259 1.57871 1.72995 1.78666 1.94849 2.29956 2.35431 2.68341 3.43969 3.80898 3.86308 4.11591 4.21540 4.23173 4.28619 4.36289 4.42927 4.54992 4.59961 4.69596 4.72864 4.78282 4.86579 4.89415 5.02053 5.11290 5.19107 5.33686 5.35726 5.38304 5.58075 5.63137 5.70047 5.74074 5.80144 5.90289 6.15265 6.30440 6.49909 6.73874 6.87090 7.41683 8.05041 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014650 B = 0.004687 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.749561 B = 5971.912019 C = 6531.427638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.184 3.816 5 C -0.203 4.203 6 C -0.118 4.118 7 C -0.137 4.137 8 C -0.215 4.215 9 S 0.044 5.956 10 C 0.582 3.418 11 O -0.579 6.579 12 C -0.252 4.252 13 C -0.053 4.053 14 C -0.232 4.232 15 C -0.077 4.077 16 C -0.219 4.219 17 C 0.106 3.894 18 C -0.537 4.537 19 H 0.052 0.948 20 C 0.005 3.995 21 N -0.818 5.818 22 Si 1.110 2.890 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.088 0.912 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.061 0.939 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -9.866 -14.954 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.339 5.339 4 C 0.060 3.940 5 C -0.322 4.322 6 C -0.150 4.150 7 C -0.167 4.167 8 C -0.351 4.351 9 S 0.307 5.693 10 C 0.374 3.626 11 O -0.459 6.459 12 C -0.257 4.257 13 C -0.072 4.072 14 C -0.251 4.251 15 C -0.095 4.095 16 C -0.238 4.238 17 C 0.103 3.897 18 C -0.565 4.565 19 H 0.071 0.929 20 C -0.210 4.210 21 N -0.442 5.442 22 Si 0.928 3.072 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.106 0.894 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.200 0.800 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.790 -6.789 -13.180 15.086 hybrid contribution 0.857 -1.886 -1.230 2.409 sum 3.647 -8.675 -14.409 17.210 Atomic orbital electron populations 1.22101 0.95698 1.02965 1.01169 1.21863 0.94711 0.81094 1.04472 1.48071 1.66003 1.15559 1.04257 1.19804 0.90575 0.97864 0.85725 1.24935 0.99193 1.01701 1.06322 1.20475 0.96912 0.98467 0.99126 1.20511 0.93353 1.00203 1.02659 1.26010 1.04308 1.00485 1.04288 1.85228 1.01330 1.31181 1.51524 1.18503 0.74269 0.85469 0.84398 1.90658 1.49058 1.18249 1.87899 1.19766 1.06667 1.01971 0.97248 1.20888 0.96579 0.92432 0.97299 1.20757 1.05856 1.03520 0.94929 1.21100 0.94895 0.94940 0.98551 1.21149 1.05256 0.98242 0.99181 1.17690 0.88839 0.92128 0.91039 1.20401 1.31673 1.06381 0.98070 0.92944 1.28271 1.02746 0.99616 0.90378 1.70491 1.10323 1.32740 1.30620 0.83103 0.72326 0.74273 0.77507 1.19044 1.19799 1.17903 0.89364 0.95816 0.91649 0.87453 0.90189 0.85473 0.92072 0.81451 0.81193 0.79997 0.86300 0.84747 0.85733 0.89423 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 10.24 71.98 0.74 -3.55 16 2 C 0.10 2.75 5.96 86.38 0.51 3.26 16 3 N -0.61 -21.33 2.46 -830.02 -2.04 -23.37 16 4 C 0.18 5.55 5.94 85.63 0.51 6.06 16 5 C -0.20 -5.66 6.09 24.59 0.15 -5.51 16 6 C -0.12 -2.46 10.05 21.22 0.21 -2.25 16 7 C -0.14 -2.61 10.18 21.22 0.22 -2.40 16 8 C -0.22 -4.78 11.23 66.72 0.75 -4.04 16 9 S 0.04 1.36 23.33 -56.49 -1.32 0.05 16 10 C 0.58 27.40 6.29 86.67 0.55 27.94 16 11 O -0.58 -32.16 16.04 -4.09 -0.07 -32.22 16 12 C -0.25 -12.22 4.93 -19.70 -0.10 -12.32 16 13 C -0.05 -2.19 7.54 22.50 0.17 -2.02 16 14 C -0.23 -8.91 10.03 22.41 0.22 -8.68 16 15 C -0.08 -3.21 10.01 22.26 0.22 -2.99 16 16 C -0.22 -11.00 8.05 22.72 0.18 -10.82 16 17 C 0.11 5.74 5.07 -21.11 -0.11 5.63 16 18 C -0.54 -30.65 7.81 23.41 0.18 -30.47 16 19 H 0.05 3.10 7.60 -2.91 -0.02 3.08 16 20 C 0.01 0.29 4.96 85.37 0.42 0.71 16 21 N -0.82 -46.85 12.70 21.88 0.28 -46.57 16 22 Si 1.11 46.99 29.99 68.60 2.06 49.05 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 2.06 8.08 -2.39 -0.02 2.04 16 30 H 0.08 2.42 4.56 -2.39 -0.01 2.41 16 31 H 0.13 2.76 8.07 -2.39 -0.02 2.74 16 32 H 0.06 2.22 7.36 -2.39 -0.02 2.20 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.12 4.23 7.59 -2.91 -0.02 4.20 16 37 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.09 4.62 7.21 -2.91 -0.02 4.60 16 40 H 0.28 16.67 6.91 -92.71 -0.64 16.03 16 Total: -1.00 -71.85 352.32 4.92 -66.92 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 1.17 Total: 27.57 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.84 Total: -41.43 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.76 Total: -69.94 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.07 Total: -32.22 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.06 Total: 49.05 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.32 Total: 0.05 kcal Total: -71.85 4.92 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600950950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds