Wall clock time and date at job start Tue Mar 31 2020 10:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47156 * 2 1 4 4 C 1.52997 * 109.47100 * 119.99744 * 2 1 3 5 5 C 1.50699 * 109.47217 * 184.99943 * 4 2 1 6 6 C 1.33391 * 125.20456 * 90.00418 * 5 4 2 7 7 C 1.38416 * 114.92588 * 180.02562 * 6 5 4 8 8 C 1.33398 * 114.91903 * 0.24045 * 7 6 5 9 9 S 1.75880 * 125.20332 * 270.04278 * 5 4 2 10 10 N 1.46498 * 109.47190 * 239.99663 * 2 1 3 11 11 C 1.34782 * 119.99748 * 84.99826 * 10 2 1 12 12 O 1.21602 * 120.00147 * 0.02562 * 11 10 2 13 13 C 1.47436 * 119.99820 * 179.97438 * 11 10 2 14 14 C 1.39222 * 120.28049 * 355.41003 * 13 11 10 15 15 C 1.38226 * 120.08863 * 180.02562 * 14 13 11 16 16 C 1.38825 * 120.67869 * 0.02641 * 15 14 13 17 17 C 1.37600 * 120.56847 * 359.97438 * 16 15 14 18 18 C 1.40708 * 119.88119 * 359.67698 * 17 16 15 19 19 C 1.40885 * 120.33031 * 180.29841 * 18 17 16 20 20 H 1.08001 * 120.00337 * 215.84287 * 19 18 17 21 21 C 1.40272 * 119.99924 * 35.83984 * 19 18 17 22 22 N 1.30632 * 120.00178 * 8.99074 * 21 19 18 23 23 Si 1.86797 * 120.00049 * 188.99033 * 21 19 18 24 24 H 1.48505 * 109.47246 * 89.99834 * 23 21 19 25 25 H 1.48502 * 109.47271 * 209.99661 * 23 21 19 26 26 H 1.48500 * 109.47492 * 330.00009 * 23 21 19 27 27 H 1.08999 * 109.47028 * 300.00103 * 1 2 3 28 28 H 1.09004 * 109.46839 * 60.00248 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47286 * 65.00185 * 4 2 1 31 31 H 1.09001 * 109.47167 * 305.00026 * 4 2 1 32 32 H 1.08004 * 122.53677 * 0.05132 * 6 5 4 33 33 H 1.07994 * 122.54647 * 179.97438 * 7 6 5 34 34 H 1.08002 * 125.20220 * 179.75861 * 8 7 6 35 35 H 0.97001 * 120.00273 * 264.99803 * 10 2 1 36 36 H 1.07998 * 119.96042 * 0.02583 * 14 13 11 37 37 H 1.08007 * 119.65851 * 180.02562 * 15 14 13 38 38 H 1.07992 * 119.71789 * 179.97438 * 16 15 14 39 39 H 1.07998 * 120.05879 * 180.02562 * 17 16 15 40 40 H 0.97000 * 120.00215 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 6 4.2187 0.3639 1.9155 7 6 5.5964 0.2507 1.8431 8 6 6.0384 -0.8173 1.1773 9 16 4.6705 -1.7618 0.6026 10 7 2.0184 -0.6907 -1.1961 11 6 2.1470 -0.0183 -2.3571 12 8 1.8582 1.1617 -2.4117 13 6 2.6390 -0.7132 -3.5608 14 6 3.0624 -2.0373 -3.4832 15 6 3.5235 -2.6848 -4.6140 16 6 3.5713 -2.0282 -5.8363 17 6 3.1597 -0.7197 -5.9443 18 6 2.6793 -0.0400 -4.8098 19 6 2.2495 1.2979 -4.9110 20 1 2.4280 1.9854 -4.0974 21 6 1.5899 1.7371 -6.0684 22 7 1.2176 0.8738 -6.9754 23 14 1.2439 3.5564 -6.3128 24 1 2.3852 4.1861 -7.0242 25 1 0.0070 3.7212 -7.1180 26 1 1.0644 4.2082 -4.9907 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -1.7715 1.2057 31 1 1.6054 -0.2616 2.1370 32 1 3.7289 1.1824 2.4220 33 1 6.2629 0.9746 2.2881 34 1 7.0774 -1.0651 1.0171 35 1 2.2491 -1.6318 -1.1525 36 1 3.0306 -2.5592 -2.5382 37 1 3.8498 -3.7121 -4.5460 38 1 3.9347 -2.5489 -6.7098 39 1 3.2001 -0.2170 -6.8993 40 1 0.7618 1.1775 -7.7760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600995777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:15 Heat of formation + Delta-G solvation = 8.389034 kcal Electronic energy + Delta-G solvation = -23549.504821 eV Core-core repulsion = 20227.180132 eV Total energy + Delta-G solvation = -3322.324689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.16557 -37.92836 -36.88309 -35.27947 -33.67023 -31.71539 -30.17160 -29.72989 -28.85177 -26.33238 -25.37665 -23.28637 -22.50351 -21.19646 -20.44475 -19.53815 -18.99159 -17.50590 -17.11279 -16.18987 -15.69420 -15.34494 -15.14932 -14.26050 -14.08947 -13.80690 -13.62527 -13.23503 -13.00473 -12.97167 -12.68185 -12.58451 -12.38628 -12.31976 -11.76890 -11.62095 -11.52571 -11.38510 -11.13083 -10.99657 -10.77605 -10.64031 -10.59778 -10.46721 -10.04812 -9.63312 -9.23688 -8.61520 -8.42403 -8.33589 -8.21126 -7.55036 -7.29427 -6.76226 -4.35532 1.07033 1.71668 2.08125 2.40274 2.80599 2.84183 3.12382 3.19230 3.27272 3.97458 4.01445 4.21862 4.70595 4.76293 5.01307 5.08906 5.14945 5.47165 5.57490 5.64059 5.65826 5.72257 5.74744 5.89404 6.01788 6.08444 6.14841 6.30174 6.33446 6.36038 6.50664 6.54133 6.67093 6.98520 7.13300 7.20852 7.29872 7.49900 7.65935 7.91747 8.03237 8.21897 8.43225 8.72378 8.87451 8.95014 9.48737 10.20031 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.004458 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.730332 B = 6279.594990 C = 7056.347566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.087 0.913 4 C -0.057 4.057 5 C -0.164 4.164 6 C -0.146 4.146 7 C -0.134 4.134 8 C -0.220 4.220 9 S 0.107 5.893 10 N -0.742 5.742 11 C 0.568 3.432 12 O -0.539 6.539 13 C -0.258 4.258 14 C -0.055 4.055 15 C -0.244 4.244 16 C -0.096 4.096 17 C -0.147 4.147 18 C 0.148 3.852 19 C -0.423 4.423 20 H 0.110 0.890 21 C 0.069 3.931 22 N -0.795 5.795 23 Si 0.914 3.086 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.258 1.258 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.388 0.612 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -3.944 14.161 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.105 0.895 4 C -0.097 4.097 5 C -0.282 4.282 6 C -0.176 4.176 7 C -0.164 4.164 8 C -0.356 4.356 9 S 0.371 5.629 10 N -0.396 5.396 11 C 0.362 3.638 12 O -0.417 6.417 13 C -0.263 4.263 14 C -0.074 4.074 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.167 4.167 18 C 0.143 3.857 19 C -0.451 4.451 20 H 0.128 0.872 21 C -0.149 4.149 22 N -0.421 5.421 23 Si 0.738 3.262 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.181 1.181 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.178 0.822 35 H 0.222 0.778 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.870 -4.422 13.073 14.096 hybrid contribution 0.120 1.428 0.511 1.521 sum 2.990 -2.995 13.584 14.228 Atomic orbital electron populations 1.22190 0.95525 1.01840 1.02490 1.20746 0.93483 0.97656 0.83658 0.89490 1.20537 0.88058 1.01944 0.99158 1.24430 0.99315 0.99924 1.04483 1.20057 0.93636 1.00064 1.03809 1.20106 0.95407 0.98857 1.02072 1.25574 1.02361 1.01082 1.06538 1.84291 0.96512 1.26770 1.55326 1.46072 1.70558 1.13444 1.09559 1.18364 0.76683 0.86336 0.82373 1.90642 1.50951 1.15938 1.84181 1.19482 1.17626 0.94581 0.94629 1.20633 0.97053 0.93538 0.96202 1.20277 1.13421 0.99063 0.93627 1.20788 0.99588 0.95209 0.95898 1.21329 1.01751 0.94322 0.99254 1.17485 0.86484 0.92543 0.89140 1.20300 1.28309 0.95921 1.00572 0.87205 1.26129 0.94172 1.00104 0.94447 1.69721 1.28352 1.36195 1.07826 0.86199 0.78243 0.82227 0.79507 1.19359 1.20398 1.18118 0.92326 0.91374 0.92777 0.90475 0.88834 0.84575 0.84652 0.82204 0.77774 0.89409 0.89158 0.89157 0.86742 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.15 2.23 2.56 -67.93 -0.17 2.05 16 3 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.06 -0.64 5.25 -27.88 -0.15 -0.79 16 5 C -0.16 -2.07 5.49 -36.00 -0.20 -2.27 16 6 C -0.15 -1.78 10.05 -41.21 -0.41 -2.19 16 7 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 8 C -0.22 -2.63 11.23 29.04 0.33 -2.31 16 9 S 0.11 1.37 23.30 -107.50 -2.50 -1.14 16 10 N -0.74 -13.11 4.74 -54.88 -0.26 -13.37 16 11 C 0.57 13.12 7.69 -12.51 -0.10 13.02 16 12 O -0.54 -14.09 13.19 5.28 0.07 -14.02 16 13 C -0.26 -6.34 5.92 -104.37 -0.62 -6.96 16 14 C -0.06 -1.19 9.52 -39.22 -0.37 -1.56 16 15 C -0.24 -5.24 10.03 -39.37 -0.39 -5.63 16 16 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 17 C -0.15 -3.77 8.62 -38.88 -0.34 -4.11 16 18 C 0.15 3.99 5.48 -106.54 -0.58 3.41 16 19 C -0.42 -11.72 7.78 -37.82 -0.29 -12.01 16 20 H 0.11 3.17 5.73 -52.49 -0.30 2.87 16 21 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 22 N -0.80 -20.84 11.25 55.56 0.63 -20.21 16 23 Si 0.91 19.88 29.57 -169.99 -5.03 14.85 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.39 6.18 6.62 -40.82 -0.27 5.91 16 36 H 0.09 1.59 6.42 -52.49 -0.34 1.25 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.11 3.00 6.72 -52.49 -0.35 2.64 16 40 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -30.30 350.28 -10.69 -40.99 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.02 Total: 11.71 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.86 Total: -24.08 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.37 Total: -33.59 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.30 -10.69 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600995777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.377 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds