Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00218 * 2 1 4 4 C 1.52998 * 109.47661 * 89.99748 * 3 2 1 5 5 C 1.50695 * 109.47599 * 180.02562 * 4 3 2 6 6 C 1.33381 * 125.20805 * 89.99568 * 5 4 3 7 7 C 1.38423 * 114.92504 * 179.97438 * 6 5 4 8 8 C 1.33392 * 114.91951 * 0.02562 * 7 6 5 9 9 S 1.75879 * 109.59309 * 359.75719 * 8 7 6 10 10 C 1.34781 * 119.99854 * 179.71664 * 2 1 3 11 11 O 1.21601 * 120.00270 * 185.40252 * 10 2 1 12 12 C 1.47436 * 119.99608 * 5.40519 * 10 2 1 13 13 C 1.39220 * 120.28586 * 44.29273 * 12 10 2 14 14 C 1.38220 * 120.09656 * 179.97438 * 13 12 10 15 15 C 1.38830 * 120.67311 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.56780 * 359.97438 * 15 14 13 17 17 C 1.40703 * 119.88644 * 359.74168 * 16 15 14 18 18 C 1.40890 * 120.33208 * 180.24885 * 17 16 15 19 19 H 1.08000 * 120.00426 * 207.64414 * 18 17 16 20 20 C 1.40279 * 119.99907 * 27.64961 * 18 17 16 21 21 N 1.30629 * 119.99532 * 13.57350 * 20 18 17 22 22 Si 1.86798 * 119.99969 * 193.57433 * 20 18 17 23 23 H 1.48503 * 109.46968 * 89.99855 * 22 20 18 24 24 H 1.48500 * 109.47057 * 209.99466 * 22 20 18 25 25 H 1.48497 * 109.47331 * 329.99855 * 22 20 18 26 26 H 1.09008 * 109.47043 * 94.50734 * 1 2 3 27 27 H 1.08998 * 109.48064 * 214.51015 * 1 2 3 28 28 H 1.09008 * 109.47178 * 334.51299 * 1 2 3 29 29 H 1.09003 * 109.47075 * 209.99683 * 3 2 1 30 30 H 1.08999 * 109.47265 * 329.99073 * 3 2 1 31 31 H 1.09003 * 109.46823 * 300.00089 * 4 3 2 32 32 H 1.09006 * 109.46989 * 59.99203 * 4 3 2 33 33 H 1.08003 * 122.53620 * 359.96334 * 6 5 4 34 34 H 1.08002 * 122.54267 * 180.02562 * 7 6 5 35 35 H 1.07994 * 125.20255 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.95286 * 359.94663 * 13 12 10 37 37 H 1.07997 * 119.66682 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.71317 * 179.97438 * 15 14 13 39 39 H 1.08005 * 120.05541 * 180.02562 * 16 15 14 40 40 H 0.97006 * 119.99724 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 1.4424 5 6 3.2055 3.0158 1.4424 6 6 2.6457 4.2265 1.4424 7 6 3.5403 5.2828 1.4430 8 6 4.8267 4.9299 1.4429 9 16 4.9571 3.1759 1.4490 10 6 2.1388 -1.1672 0.0058 11 8 3.3508 -1.1692 0.1049 12 6 1.4064 -2.4417 -0.1082 13 6 0.3826 -2.5822 -1.0411 14 6 -0.3010 -3.7790 -1.1450 15 6 0.0209 -4.8520 -0.3251 16 6 1.0278 -4.7435 0.6064 17 6 1.7432 -3.5381 0.7283 18 6 2.7795 -3.4183 1.6752 19 1 3.0224 -2.4515 2.0906 20 6 3.4958 -4.5550 2.0785 21 7 3.3940 -5.6661 1.3992 22 14 4.5953 -4.4796 3.5868 23 1 3.8101 -4.8527 4.7908 24 1 5.7277 -5.4259 3.4216 25 1 5.1219 -3.1005 3.7471 26 1 -0.3633 -0.0808 -1.0246 27 1 -0.3635 -0.8468 0.5822 28 1 -0.3634 0.9277 0.4422 29 1 3.1499 1.1382 -0.5138 30 1 1.6085 2.0283 -0.5140 31 1 1.5000 1.8408 1.9562 32 1 3.0415 0.9507 1.9564 33 1 1.5755 4.3716 1.4419 34 1 3.2210 6.3145 1.4435 35 1 5.6605 5.6161 1.4436 36 1 0.1219 -1.7547 -1.6843 37 1 -1.0943 -3.8802 -1.8708 38 1 -0.5237 -5.7799 -0.4192 39 1 1.2716 -5.5837 1.2397 40 1 3.8891 -6.4523 1.6783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601259472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = 16.813689 kcal Electronic energy + Delta-G solvation = -23228.259928 eV Core-core repulsion = 19906.300560 eV Total energy + Delta-G solvation = -3321.959369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.32167 -37.95943 -36.91771 -35.11328 -33.76408 -32.54528 -30.04368 -29.55947 -27.89321 -26.18225 -25.45095 -24.28241 -22.57622 -21.34607 -20.87404 -19.24000 -18.59951 -17.27707 -17.12934 -16.27505 -15.71586 -15.39772 -15.28221 -14.62219 -14.39012 -13.90032 -13.59090 -13.32570 -12.99199 -12.86717 -12.65563 -12.52900 -12.18814 -12.09283 -11.97810 -11.91202 -11.73108 -11.61478 -11.18260 -11.01459 -10.87091 -10.80825 -10.54796 -10.49280 -9.94921 -9.64685 -9.27352 -8.77604 -8.65143 -8.48241 -8.02646 -7.53567 -7.46180 -6.83692 -4.42893 0.98544 1.64798 2.04463 2.46878 2.70285 2.80727 3.06714 3.12728 3.21450 3.63685 3.92165 3.96933 4.59169 4.88200 5.00217 5.10501 5.38120 5.42194 5.48989 5.53961 5.58702 5.67217 5.78378 5.83629 5.99016 6.10292 6.18020 6.19363 6.25787 6.27775 6.35961 6.49968 6.57716 6.97227 7.08641 7.15211 7.21951 7.45779 7.68673 7.85337 7.97536 8.11275 8.21707 8.55115 8.77704 8.85175 9.23655 10.09673 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.004122 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.906901 B = 6790.964002 C = 8518.076165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.630 5.630 3 C 0.129 3.871 4 C -0.069 4.069 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.134 4.134 8 C -0.228 4.228 9 S 0.111 5.889 10 C 0.579 3.421 11 O -0.534 6.534 12 C -0.260 4.260 13 C -0.057 4.057 14 C -0.251 4.251 15 C -0.093 4.093 16 C -0.159 4.159 17 C 0.147 3.853 18 C -0.425 4.425 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.259 1.259 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 14.872 0.851 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.366 5.366 3 C 0.005 3.995 4 C -0.109 4.109 5 C -0.275 4.275 6 C -0.180 4.180 7 C -0.164 4.164 8 C -0.364 4.364 9 S 0.374 5.626 10 C 0.372 3.628 11 O -0.410 6.410 12 C -0.264 4.264 13 C -0.075 4.075 14 C -0.270 4.270 15 C -0.112 4.112 16 C -0.178 4.178 17 C 0.143 3.857 18 C -0.453 4.453 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.183 1.183 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.840 13.604 0.893 13.659 hybrid contribution -0.705 1.041 0.514 1.359 sum -1.545 14.645 1.407 14.794 Atomic orbital electron populations 1.21757 0.80117 1.02285 1.01295 1.47945 1.06586 1.05428 1.76615 1.21231 0.98037 0.85440 0.94810 1.20617 0.99485 0.91548 0.99287 1.24529 0.96282 0.98956 1.07771 1.20095 1.01041 0.91033 1.05870 1.20120 0.92194 1.00246 1.03886 1.25638 1.00815 0.98471 1.11449 1.84673 1.04482 1.01337 1.72086 1.18600 0.86953 0.83143 0.74132 1.90690 1.14332 1.87026 1.48988 1.19361 1.05462 0.95317 1.06302 1.20692 0.94035 0.96332 0.96464 1.20260 1.05611 0.95045 1.06090 1.20791 0.97381 0.96625 0.96383 1.21365 0.96238 0.99183 1.00991 1.17387 0.90047 0.89475 0.88822 1.19684 1.12339 0.94800 1.18507 0.89923 1.26008 0.96809 0.94473 0.97071 1.69719 1.34403 1.02176 1.34593 0.86239 0.79428 0.79719 0.81082 1.19168 1.20059 1.18264 0.93271 0.90416 0.92425 0.90207 0.91150 0.90024 0.89782 0.84468 0.84670 0.82246 0.88847 0.89219 0.89207 0.86053 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 9.00 59.84 0.54 1.81 16 2 N -0.63 -11.21 2.87 -182.85 -0.53 -11.74 16 3 C 0.13 1.97 5.32 -4.05 -0.02 1.95 16 4 C -0.07 -0.99 6.03 -27.89 -0.17 -1.16 16 5 C -0.16 -2.06 5.76 -36.01 -0.21 -2.26 16 6 C -0.15 -1.69 10.05 -41.21 -0.41 -2.10 16 7 C -0.13 -1.37 10.18 -41.21 -0.42 -1.79 16 8 C -0.23 -2.42 11.23 29.04 0.33 -2.10 16 9 S 0.11 1.44 23.33 -107.50 -2.51 -1.07 16 10 C 0.58 13.32 6.66 -12.51 -0.08 13.24 16 11 O -0.53 -14.09 15.07 5.28 0.08 -14.01 16 12 C -0.26 -6.28 4.92 -104.37 -0.51 -6.79 16 13 C -0.06 -1.21 7.97 -39.22 -0.31 -1.52 16 14 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 15 C -0.09 -2.09 10.01 -39.60 -0.40 -2.49 16 16 C -0.16 -4.00 8.66 -38.89 -0.34 -4.34 16 17 C 0.15 3.88 5.57 -106.54 -0.59 3.29 16 18 C -0.43 -11.52 7.86 -37.81 -0.30 -11.81 16 19 H 0.08 2.29 6.82 -52.49 -0.36 1.93 16 20 C 0.08 1.93 5.21 -17.30 -0.09 1.84 16 21 N -0.78 -20.24 10.92 55.56 0.61 -19.63 16 22 Si 0.91 19.30 29.58 -169.99 -5.03 14.27 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 H 0.05 0.65 6.75 -51.92 -0.35 0.30 16 27 H 0.08 1.24 6.74 -51.93 -0.35 0.89 16 28 H 0.06 0.64 8.04 -51.92 -0.42 0.23 16 29 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 30 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.09 1.74 6.19 -52.48 -0.32 1.41 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.12 3.14 6.24 -52.48 -0.33 2.81 16 40 H 0.28 6.61 8.29 -40.82 -0.34 6.28 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -29.93 348.76 -10.53 -40.47 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.03 Total: 6.42 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.38 Total: -19.95 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.08 Total: -31.37 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.93 -10.53 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601259472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.281 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds