Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00218 * 2 1 4 4 C 1.52998 * 109.47661 * 89.99748 * 3 2 1 5 5 C 1.50695 * 109.47599 * 180.02562 * 4 3 2 6 6 C 1.33381 * 125.20805 * 89.99568 * 5 4 3 7 7 C 1.38423 * 114.92504 * 179.97438 * 6 5 4 8 8 C 1.33392 * 114.91951 * 0.02562 * 7 6 5 9 9 S 1.75879 * 109.59309 * 359.75719 * 8 7 6 10 10 C 1.34781 * 119.99854 * 179.71664 * 2 1 3 11 11 O 1.21601 * 120.00270 * 185.40252 * 10 2 1 12 12 C 1.47436 * 119.99608 * 5.40519 * 10 2 1 13 13 C 1.39220 * 120.28586 * 44.29273 * 12 10 2 14 14 C 1.38220 * 120.09656 * 179.97438 * 13 12 10 15 15 C 1.38830 * 120.67311 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.56780 * 359.97438 * 15 14 13 17 17 C 1.40703 * 119.88644 * 359.74168 * 16 15 14 18 18 C 1.40890 * 120.33208 * 180.24885 * 17 16 15 19 19 H 1.08000 * 120.00426 * 207.64414 * 18 17 16 20 20 C 1.40279 * 119.99907 * 27.64961 * 18 17 16 21 21 N 1.30629 * 119.99532 * 13.57350 * 20 18 17 22 22 Si 1.86798 * 119.99969 * 193.57433 * 20 18 17 23 23 H 1.48503 * 109.46968 * 89.99855 * 22 20 18 24 24 H 1.48500 * 109.47057 * 209.99466 * 22 20 18 25 25 H 1.48497 * 109.47331 * 329.99855 * 22 20 18 26 26 H 1.09008 * 109.47043 * 94.50734 * 1 2 3 27 27 H 1.08998 * 109.48064 * 214.51015 * 1 2 3 28 28 H 1.09008 * 109.47178 * 334.51299 * 1 2 3 29 29 H 1.09003 * 109.47075 * 209.99683 * 3 2 1 30 30 H 1.08999 * 109.47265 * 329.99073 * 3 2 1 31 31 H 1.09003 * 109.46823 * 300.00089 * 4 3 2 32 32 H 1.09006 * 109.46989 * 59.99203 * 4 3 2 33 33 H 1.08003 * 122.53620 * 359.96334 * 6 5 4 34 34 H 1.08002 * 122.54267 * 180.02562 * 7 6 5 35 35 H 1.07994 * 125.20255 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.95286 * 359.94663 * 13 12 10 37 37 H 1.07997 * 119.66682 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.71317 * 179.97438 * 15 14 13 39 39 H 1.08005 * 120.05541 * 180.02562 * 16 15 14 40 40 H 0.97006 * 119.99724 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 1.4424 5 6 3.2055 3.0158 1.4424 6 6 2.6457 4.2265 1.4424 7 6 3.5403 5.2828 1.4430 8 6 4.8267 4.9299 1.4429 9 16 4.9571 3.1759 1.4490 10 6 2.1388 -1.1672 0.0058 11 8 3.3508 -1.1692 0.1049 12 6 1.4064 -2.4417 -0.1082 13 6 0.3826 -2.5822 -1.0411 14 6 -0.3010 -3.7790 -1.1450 15 6 0.0209 -4.8520 -0.3251 16 6 1.0278 -4.7435 0.6064 17 6 1.7432 -3.5381 0.7283 18 6 2.7795 -3.4183 1.6752 19 1 3.0224 -2.4515 2.0906 20 6 3.4958 -4.5550 2.0785 21 7 3.3940 -5.6661 1.3992 22 14 4.5953 -4.4796 3.5868 23 1 3.8101 -4.8527 4.7908 24 1 5.7277 -5.4259 3.4216 25 1 5.1219 -3.1005 3.7471 26 1 -0.3633 -0.0808 -1.0246 27 1 -0.3635 -0.8468 0.5822 28 1 -0.3634 0.9277 0.4422 29 1 3.1499 1.1382 -0.5138 30 1 1.6085 2.0283 -0.5140 31 1 1.5000 1.8408 1.9562 32 1 3.0415 0.9507 1.9564 33 1 1.5755 4.3716 1.4419 34 1 3.2210 6.3145 1.4435 35 1 5.6605 5.6161 1.4436 36 1 0.1219 -1.7547 -1.6843 37 1 -1.0943 -3.8802 -1.8708 38 1 -0.5237 -5.7799 -0.4192 39 1 1.2716 -5.5837 1.2397 40 1 3.8891 -6.4523 1.6783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601259472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = 1.436202 kcal Electronic energy + Delta-G solvation = -23228.926746 eV Core-core repulsion = 19906.300560 eV Total energy + Delta-G solvation = -3322.626187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97785 -39.02493 -38.55140 -36.68167 -35.60667 -33.77502 -31.83690 -31.28083 -29.01890 -27.66129 -27.08913 -25.55121 -23.79086 -22.97119 -22.57961 -20.26237 -20.08805 -19.14573 -18.14888 -17.89884 -17.31991 -16.94121 -16.41154 -16.15076 -15.98947 -15.38922 -15.08417 -14.71827 -14.47774 -14.22198 -14.05680 -13.75890 -13.61332 -13.49617 -13.26491 -13.09052 -13.05447 -12.96829 -12.90569 -12.72716 -12.57733 -12.26304 -11.95390 -11.80761 -11.55363 -11.45185 -11.13241 -10.46409 -9.82695 -9.47025 -9.43012 -9.32097 -9.27622 -8.71052 -6.39780 0.08601 0.64270 0.71372 1.01861 1.16167 1.29601 1.42237 1.47537 1.85199 2.11014 2.15972 2.31927 2.70921 3.69204 3.85358 3.87918 4.19104 4.22277 4.27107 4.35273 4.45092 4.48409 4.55788 4.63816 4.73383 4.79231 4.83401 4.94621 4.98995 5.06874 5.08699 5.24386 5.25557 5.36207 5.38235 5.59925 5.64253 5.76584 5.88408 6.01593 6.12580 6.29258 6.51645 6.66753 6.87139 6.95682 7.51971 8.24705 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.004122 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.906901 B = 6790.964002 C = 8518.076165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.621 5.621 3 C 0.130 3.870 4 C -0.057 4.057 5 C -0.180 4.180 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.212 4.212 9 S 0.038 5.962 10 C 0.571 3.429 11 O -0.584 6.584 12 C -0.273 4.273 13 C -0.052 4.052 14 C -0.239 4.239 15 C -0.092 4.092 16 C -0.186 4.186 17 C 0.115 3.885 18 C -0.464 4.464 19 H 0.058 0.942 20 C 0.038 3.962 21 N -0.815 5.815 22 Si 0.973 3.027 23 H -0.249 1.249 24 H -0.261 1.261 25 H -0.275 1.275 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 17.451 -0.018 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C 0.007 3.993 4 C -0.097 4.097 5 C -0.298 4.298 6 C -0.162 4.162 7 C -0.166 4.166 8 C -0.348 4.348 9 S 0.301 5.699 10 C 0.364 3.636 11 O -0.465 6.465 12 C -0.278 4.278 13 C -0.071 4.071 14 C -0.258 4.258 15 C -0.110 4.110 16 C -0.206 4.206 17 C 0.112 3.888 18 C -0.493 4.493 19 H 0.076 0.924 20 C -0.178 4.178 21 N -0.441 5.441 22 Si 0.794 3.206 23 H -0.173 1.173 24 H -0.185 1.185 25 H -0.200 1.200 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.182 0.818 34 H 0.187 0.813 35 H 0.202 0.798 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.415 16.205 0.015 16.561 hybrid contribution -0.090 0.408 0.639 0.763 sum -3.505 16.614 0.653 16.992 Atomic orbital electron populations 1.22012 0.77458 1.03759 1.02710 1.47901 1.08226 1.04732 1.74521 1.21398 0.97276 0.84950 0.95676 1.20387 0.99797 0.91280 0.98240 1.24347 0.95458 0.99033 1.10921 1.20466 1.02572 0.90170 1.02993 1.20512 0.91629 1.01603 1.02828 1.25936 1.02158 0.96315 1.10356 1.84970 1.06284 1.04987 1.73648 1.18639 0.86403 0.84530 0.74079 1.90657 1.16458 1.87933 1.51443 1.19709 1.06109 0.95515 1.06466 1.21036 0.92727 0.97697 0.95605 1.20755 1.05555 0.93998 1.05465 1.21151 0.96273 0.98353 0.95240 1.21323 0.97963 0.98640 1.02627 1.17742 0.90450 0.90968 0.89634 1.19653 1.14387 0.94446 1.20817 0.92422 1.26691 0.97786 0.93900 0.99448 1.69743 1.35735 1.02766 1.35846 0.85342 0.78137 0.78856 0.78244 1.17335 1.18527 1.19975 0.91138 0.92267 0.88318 0.93079 0.86957 0.88069 0.94201 0.81760 0.81271 0.79769 0.85400 0.85149 0.86395 0.87698 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 9.00 127.77 1.15 3.27 16 2 N -0.62 -21.74 2.87 -850.67 -2.44 -24.18 16 3 C 0.13 3.89 5.32 86.38 0.46 4.35 16 4 C -0.06 -1.64 6.03 29.85 0.18 -1.46 16 5 C -0.18 -4.59 5.76 24.58 0.14 -4.45 16 6 C -0.13 -2.54 10.05 21.21 0.21 -2.33 16 7 C -0.14 -2.31 10.18 21.22 0.22 -2.09 16 8 C -0.21 -4.07 11.23 66.72 0.75 -3.33 16 9 S 0.04 1.03 23.33 -56.49 -1.32 -0.29 16 10 C 0.57 27.25 6.66 86.67 0.58 27.83 16 11 O -0.58 -33.09 15.07 -4.03 -0.06 -33.15 16 12 C -0.27 -13.48 4.92 -19.70 -0.10 -13.58 16 13 C -0.05 -2.13 7.97 22.50 0.18 -1.95 16 14 C -0.24 -9.40 10.03 22.41 0.22 -9.17 16 15 C -0.09 -4.01 10.01 22.26 0.22 -3.79 16 16 C -0.19 -9.69 8.66 22.72 0.20 -9.49 16 17 C 0.12 6.41 5.57 -21.11 -0.12 6.29 16 18 C -0.46 -27.00 7.86 23.42 0.18 -26.81 16 19 H 0.06 3.51 6.82 -2.91 -0.02 3.49 16 20 C 0.04 2.03 5.21 85.37 0.44 2.47 16 21 N -0.82 -44.15 10.92 21.88 0.24 -43.92 16 22 Si 0.97 41.82 29.58 68.60 2.03 43.84 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H 0.07 1.55 6.75 -2.38 -0.02 1.53 16 27 H 0.06 1.78 6.74 -2.39 -0.02 1.76 16 28 H 0.10 1.76 8.04 -2.38 -0.02 1.74 16 29 H 0.05 1.84 7.51 -2.39 -0.02 1.82 16 30 H 0.11 2.42 8.07 -2.39 -0.02 2.41 16 31 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.13 4.27 6.19 -2.91 -0.02 4.25 16 37 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.11 5.70 6.24 -2.91 -0.02 5.69 16 40 H 0.29 14.15 8.29 -92.70 -0.77 13.38 16 Total: -1.00 -72.01 348.76 4.42 -67.59 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.05 Total: 24.33 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 4.92 Total: -34.23 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -2.21 Total: -68.10 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.06 Total: -33.15 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -1.32 Total: -0.29 kcal Total: -72.01 4.42 -67.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601259472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.029 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds