Wall clock time and date at job start Tue Mar 31 2020 11:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99935 * 2 1 4 4 O 1.21312 * 120.00182 * 185.48618 * 3 2 1 5 5 C 1.50696 * 119.99948 * 5.48680 * 3 2 1 6 6 C 1.53005 * 109.47070 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46791 * 53.96642 * 6 5 3 8 8 C 1.50699 * 109.47143 * 293.96520 * 6 5 3 9 9 H 1.07999 * 120.00098 * 334.96572 * 8 6 5 10 10 C 1.37875 * 119.99621 * 154.96192 * 8 6 5 11 11 N 1.31512 * 120.00419 * 4.80325 * 10 8 6 12 12 Si 1.86802 * 119.99978 * 185.07653 * 10 8 6 13 13 H 1.48497 * 109.47113 * 269.72528 * 12 10 8 14 14 H 1.48503 * 109.47105 * 29.72633 * 12 10 8 15 15 H 1.48503 * 109.47102 * 149.72363 * 12 10 8 16 16 C 1.50694 * 109.46979 * 173.96630 * 6 5 3 17 17 C 1.38244 * 120.00303 * 64.73175 * 16 6 5 18 18 C 1.38235 * 120.00051 * 179.78803 * 17 16 6 19 19 C 1.38234 * 119.99791 * 0.43917 * 18 17 16 20 20 C 1.38238 * 120.00426 * 359.81636 * 19 18 17 21 21 C 1.38234 * 120.00111 * 245.00403 * 16 6 5 22 22 C 1.40725 * 119.99923 * 180.02562 * 2 1 3 23 23 C 1.38802 * 122.62432 * 6.30196 * 22 2 1 24 24 C 1.33360 * 114.88893 * 180.02562 * 23 22 2 25 25 S 1.75855 * 109.71407 * 359.97438 * 24 23 22 26 26 C 1.33815 * 122.61891 * 186.01551 * 22 2 1 27 27 H 1.08994 * 109.47224 * 89.99741 * 1 2 3 28 28 H 1.09001 * 109.46964 * 209.99551 * 1 2 3 29 29 H 1.08999 * 109.47214 * 329.99382 * 1 2 3 30 30 H 1.09004 * 109.47077 * 59.99693 * 5 3 2 31 31 H 1.08992 * 109.47389 * 299.99709 * 5 3 2 32 32 H 0.97005 * 119.99710 * 355.27057 * 11 10 8 33 33 H 1.07996 * 119.99665 * 359.97438 * 17 16 6 34 34 H 1.07990 * 119.99734 * 180.27050 * 18 17 16 35 35 H 1.08002 * 119.99704 * 179.83587 * 19 18 17 36 36 H 1.07994 * 119.99878 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.99868 * 359.97438 * 21 16 6 38 38 H 1.08000 * 122.55083 * 0.02562 * 23 22 2 39 39 H 1.07999 * 125.14369 * 180.02562 * 24 23 22 40 40 H 1.07999 * 125.20439 * 359.95872 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1697 -0.1004 5 6 1.3905 2.4693 0.1248 6 6 2.3837 3.6328 0.0987 7 1 3.0082 3.5575 -0.7915 8 6 3.2532 3.5788 1.3284 9 1 2.8940 3.0916 2.2228 10 6 4.5074 4.1512 1.3115 11 7 4.9082 4.8258 0.2561 12 14 5.6403 3.9622 2.7846 13 1 5.4179 5.0875 3.7277 14 1 5.3507 2.6771 3.4702 15 1 7.0531 3.9717 2.3271 16 6 1.6290 4.9370 0.0741 17 6 0.8432 5.3013 1.1515 18 6 0.1544 6.4996 1.1307 19 6 0.2442 7.3294 0.0288 20 6 1.0258 6.9627 -1.0509 21 6 1.7180 5.7663 -1.0282 22 6 2.1686 -1.2187 -0.0005 23 6 1.5365 -2.4477 -0.1294 24 6 2.3517 -3.5030 -0.1096 25 16 4.0150 -2.9642 0.0792 26 6 3.5000 -1.2830 0.1175 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 0.8398 2.4831 1.0654 31 1 0.6925 2.5683 -0.7064 32 1 4.3501 4.8631 -0.5364 33 1 0.7699 4.6511 2.0107 34 1 -0.4560 6.7862 1.9742 35 1 -0.2961 8.2644 0.0114 36 1 1.0962 7.6112 -1.9115 37 1 2.3288 5.4799 -1.8716 38 1 0.4660 -2.5421 -0.2375 39 1 2.0379 -4.5327 -0.1973 40 1 4.1576 -0.4327 0.2221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892558051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:29 Heat of formation + Delta-G solvation = 34.104699 kcal Electronic energy + Delta-G solvation = -23643.894431 eV Core-core repulsion = 20322.684856 eV Total energy + Delta-G solvation = -3321.209574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23929 -38.56328 -37.24205 -34.48631 -34.36024 -31.39057 -30.13951 -29.72503 -28.67882 -26.35515 -25.35267 -23.92823 -22.82417 -21.70820 -20.46226 -19.46220 -18.41704 -17.77262 -16.87173 -16.52405 -15.90974 -15.42116 -15.37810 -14.49332 -14.20941 -13.91814 -13.68714 -13.42190 -13.11829 -12.80073 -12.75362 -12.65083 -12.56393 -12.31087 -12.29510 -12.06978 -11.86690 -11.53666 -11.05544 -10.78530 -10.73651 -10.46134 -10.17998 -10.07017 -9.78940 -9.72717 -8.98715 -8.67189 -8.56855 -8.31840 -8.16379 -7.67402 -7.52114 -6.27024 -3.96245 1.20099 1.82481 2.13387 2.16639 2.22371 2.66729 3.30551 3.45096 3.47967 3.53851 3.67259 4.57415 4.63239 4.89086 5.02486 5.19158 5.27743 5.38699 5.49140 5.57462 5.60300 5.60860 5.72670 5.85011 5.89443 5.94615 5.95933 6.11375 6.25067 6.27987 6.34051 6.40063 6.62079 6.75278 6.88711 7.07005 7.15384 7.19887 7.33726 7.66539 7.68067 7.82631 8.16496 8.46465 8.70825 8.93277 9.73019 11.13003 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004407 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.275229 B = 6352.422894 C = 7769.527135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.559 5.559 3 C 0.514 3.486 4 O -0.475 6.475 5 C -0.111 4.111 6 C 0.072 3.928 7 H 0.049 0.951 8 C -0.570 4.570 9 H 0.046 0.954 10 C 0.032 3.968 11 N -0.905 5.905 12 Si 1.064 2.936 13 H -0.290 1.290 14 H -0.289 1.289 15 H -0.285 1.285 16 C -0.031 4.031 17 C -0.107 4.107 18 C -0.130 4.130 19 C -0.152 4.152 20 C -0.124 4.124 21 C -0.128 4.128 22 C 0.126 3.874 23 C -0.149 4.149 24 C -0.208 4.208 25 S 0.085 5.915 26 C -0.237 4.237 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.271 0.729 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 -10.306 -1.370 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.287 5.287 3 C 0.303 3.697 4 O -0.346 6.346 5 C -0.151 4.151 6 C 0.053 3.947 7 H 0.067 0.933 8 C -0.607 4.607 9 H 0.064 0.936 10 C -0.174 4.174 11 N -0.540 5.540 12 Si 0.893 3.107 13 H -0.217 1.217 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.032 4.032 17 C -0.125 4.125 18 C -0.148 4.148 19 C -0.170 4.170 20 C -0.142 4.142 21 C -0.147 4.147 22 C 0.022 3.978 23 C -0.182 4.182 24 C -0.344 4.344 25 S 0.346 5.654 26 C -0.376 4.376 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.787 -10.484 -0.732 13.080 hybrid contribution -3.000 0.288 -0.591 3.072 sum -10.787 -10.197 -1.323 14.903 Atomic orbital electron populations 1.21880 0.78948 1.03720 1.02160 1.45715 1.06839 1.03755 1.72400 1.21134 0.88413 0.84444 0.75661 1.90555 1.14039 1.85419 1.44613 1.21707 0.99141 0.92416 1.01825 1.17880 0.91373 0.85105 1.00357 0.93256 1.21557 1.01306 1.40516 0.97368 0.93578 1.25577 0.96665 0.92755 1.02425 1.70729 1.41928 1.36943 1.04402 0.83620 0.76411 0.75811 0.74844 1.21745 1.21568 1.21053 1.20767 0.92099 0.98642 0.91650 1.20913 0.97006 0.96332 0.98246 1.21010 1.00664 0.95345 0.97752 1.20831 1.01633 0.99605 0.94921 1.20966 0.98203 0.96867 0.98215 1.21060 0.99942 0.95126 0.98540 1.16904 0.90983 0.86111 1.03803 1.19817 1.01021 0.90526 1.06878 1.25312 0.96476 1.02408 1.10214 1.84215 1.07634 1.00601 1.72974 1.26468 0.98820 0.99733 1.12560 0.92253 0.90953 0.89977 0.89773 0.91249 0.91786 0.86727 0.87431 0.87569 0.87444 0.87193 0.84231 0.81917 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.75 59.85 0.58 1.42 16 2 N -0.56 -9.02 3.12 -122.03 -0.38 -9.40 16 3 C 0.51 10.24 7.36 -10.99 -0.08 10.16 16 4 O -0.48 -11.45 11.87 5.53 0.07 -11.38 16 5 C -0.11 -2.08 3.39 -27.88 -0.09 -2.18 16 6 C 0.07 1.68 1.24 -92.92 -0.12 1.56 16 7 H 0.05 1.30 6.42 -51.93 -0.33 0.97 16 8 C -0.57 -15.18 6.40 -34.44 -0.22 -15.40 16 9 H 0.05 1.24 7.81 -52.49 -0.41 0.83 16 10 C 0.03 0.90 5.45 -17.82 -0.10 0.80 16 11 N -0.90 -27.23 13.63 55.43 0.76 -26.48 16 12 Si 1.06 26.12 29.91 -169.99 -5.08 21.04 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 C -0.03 -0.67 4.64 -104.62 -0.49 -1.15 16 17 C -0.11 -2.13 8.89 -39.58 -0.35 -2.48 16 18 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 19 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 20 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 21 C -0.13 -2.64 9.37 -39.58 -0.37 -3.01 16 22 C 0.13 2.03 6.41 -85.11 -0.55 1.48 16 23 C -0.15 -1.88 9.26 -41.08 -0.38 -2.26 16 24 C -0.21 -2.41 11.22 29.03 0.33 -2.09 16 25 S 0.09 1.16 23.33 -107.50 -2.51 -1.34 16 26 C -0.24 -4.19 10.00 29.18 0.29 -3.89 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16 29 H 0.08 0.84 6.45 -51.93 -0.33 0.50 16 30 H 0.08 1.47 7.35 -51.93 -0.38 1.09 16 31 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 32 H 0.27 8.04 6.34 -40.82 -0.26 7.79 16 33 H 0.11 2.22 7.82 -52.49 -0.41 1.81 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.11 2.23 7.95 -52.49 -0.42 1.82 16 38 H 0.14 1.36 6.86 -52.49 -0.36 1.00 16 39 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.20 4.21 5.39 -52.49 -0.28 3.92 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -32.49 344.24 -9.57 -42.05 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.87 Total: 5.70 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.73 Total: -25.37 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.37 Total: -35.88 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.04 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.49 -9.57 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892558051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.159 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds