Wall clock time and date at job start Tue Mar 31 2020 11:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99935 * 2 1 4 4 O 1.21312 * 120.00182 * 185.48618 * 3 2 1 5 5 C 1.50696 * 119.99948 * 5.48680 * 3 2 1 6 6 C 1.53005 * 109.47070 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46791 * 53.96642 * 6 5 3 8 8 C 1.50699 * 109.47143 * 293.96520 * 6 5 3 9 9 H 1.07999 * 120.00098 * 334.96572 * 8 6 5 10 10 C 1.37875 * 119.99621 * 154.96192 * 8 6 5 11 11 N 1.31512 * 120.00419 * 4.80325 * 10 8 6 12 12 Si 1.86802 * 119.99978 * 185.07653 * 10 8 6 13 13 H 1.48497 * 109.47113 * 269.72528 * 12 10 8 14 14 H 1.48503 * 109.47105 * 29.72633 * 12 10 8 15 15 H 1.48503 * 109.47102 * 149.72363 * 12 10 8 16 16 C 1.50694 * 109.46979 * 173.96630 * 6 5 3 17 17 C 1.38244 * 120.00303 * 64.73175 * 16 6 5 18 18 C 1.38235 * 120.00051 * 179.78803 * 17 16 6 19 19 C 1.38234 * 119.99791 * 0.43917 * 18 17 16 20 20 C 1.38238 * 120.00426 * 359.81636 * 19 18 17 21 21 C 1.38234 * 120.00111 * 245.00403 * 16 6 5 22 22 C 1.40725 * 119.99923 * 180.02562 * 2 1 3 23 23 C 1.38802 * 122.62432 * 6.30196 * 22 2 1 24 24 C 1.33360 * 114.88893 * 180.02562 * 23 22 2 25 25 S 1.75855 * 109.71407 * 359.97438 * 24 23 22 26 26 C 1.33815 * 122.61891 * 186.01551 * 22 2 1 27 27 H 1.08994 * 109.47224 * 89.99741 * 1 2 3 28 28 H 1.09001 * 109.46964 * 209.99551 * 1 2 3 29 29 H 1.08999 * 109.47214 * 329.99382 * 1 2 3 30 30 H 1.09004 * 109.47077 * 59.99693 * 5 3 2 31 31 H 1.08992 * 109.47389 * 299.99709 * 5 3 2 32 32 H 0.97005 * 119.99710 * 355.27057 * 11 10 8 33 33 H 1.07996 * 119.99665 * 359.97438 * 17 16 6 34 34 H 1.07990 * 119.99734 * 180.27050 * 18 17 16 35 35 H 1.08002 * 119.99704 * 179.83587 * 19 18 17 36 36 H 1.07994 * 119.99878 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.99868 * 359.97438 * 21 16 6 38 38 H 1.08000 * 122.55083 * 0.02562 * 23 22 2 39 39 H 1.07999 * 125.14369 * 180.02562 * 24 23 22 40 40 H 1.07999 * 125.20439 * 359.95872 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1697 -0.1004 5 6 1.3905 2.4693 0.1248 6 6 2.3837 3.6328 0.0987 7 1 3.0082 3.5575 -0.7915 8 6 3.2532 3.5788 1.3284 9 1 2.8940 3.0916 2.2228 10 6 4.5074 4.1512 1.3115 11 7 4.9082 4.8258 0.2561 12 14 5.6403 3.9622 2.7846 13 1 5.4179 5.0875 3.7277 14 1 5.3507 2.6771 3.4702 15 1 7.0531 3.9717 2.3271 16 6 1.6290 4.9370 0.0741 17 6 0.8432 5.3013 1.1515 18 6 0.1544 6.4996 1.1307 19 6 0.2442 7.3294 0.0288 20 6 1.0258 6.9627 -1.0509 21 6 1.7180 5.7663 -1.0282 22 6 2.1686 -1.2187 -0.0005 23 6 1.5365 -2.4477 -0.1294 24 6 2.3517 -3.5030 -0.1096 25 16 4.0150 -2.9642 0.0792 26 6 3.5000 -1.2830 0.1175 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 0.8398 2.4831 1.0654 31 1 0.6925 2.5683 -0.7064 32 1 4.3501 4.8631 -0.5364 33 1 0.7699 4.6511 2.0107 34 1 -0.4560 6.7862 1.9742 35 1 -0.2961 8.2644 0.0114 36 1 1.0962 7.6112 -1.9115 37 1 2.3288 5.4799 -1.8716 38 1 0.4660 -2.5421 -0.2375 39 1 2.0379 -4.5327 -0.1973 40 1 4.1576 -0.4327 0.2221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892558051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:29 Heat of formation + Delta-G solvation = 16.117564 kcal Electronic energy + Delta-G solvation = -23644.674411 eV Core-core repulsion = 20322.684856 eV Total energy + Delta-G solvation = -3321.989555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62421 -40.06140 -38.57291 -36.14955 -35.75080 -33.29933 -31.61421 -30.98281 -30.02399 -27.63647 -26.94391 -25.43382 -24.35326 -23.20491 -21.90057 -20.96372 -19.72993 -18.91541 -18.77102 -17.88520 -17.28552 -16.84954 -16.66523 -16.01328 -15.72289 -15.63562 -15.17832 -14.90639 -14.43657 -14.23411 -14.10380 -13.99672 -13.88596 -13.70356 -13.48343 -13.35659 -13.16966 -13.09309 -12.75690 -12.65299 -12.10379 -11.99459 -11.83297 -11.73437 -11.51861 -10.96830 -10.69580 -10.56313 -10.32703 -9.66617 -9.64360 -9.28666 -8.72444 -8.47716 -6.14826 0.09487 0.67431 0.70364 0.74854 1.06422 1.37225 1.44216 1.55486 1.68929 2.05060 2.13090 2.56787 3.09658 3.33814 3.68776 4.05640 4.10155 4.22107 4.24023 4.27933 4.34379 4.38213 4.44451 4.55594 4.60117 4.72472 4.80029 4.83166 4.86344 4.89794 5.01740 5.10098 5.20766 5.27587 5.39087 5.40887 5.74449 5.80803 5.83328 5.92227 6.21115 6.27496 6.35581 6.40193 6.74868 7.24534 7.60236 8.92237 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.004407 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.275229 B = 6352.422894 C = 7769.527135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.555 5.555 3 C 0.504 3.496 4 O -0.533 6.533 5 C -0.101 4.101 6 C 0.074 3.926 7 H 0.004 0.996 8 C -0.557 4.557 9 H 0.037 0.963 10 C -0.024 4.024 11 N -0.941 5.941 12 Si 1.098 2.902 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.291 1.291 16 C -0.053 4.053 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.125 4.125 21 C -0.151 4.151 22 C 0.121 3.879 23 C -0.156 4.156 24 C -0.180 4.180 25 S 0.096 5.904 26 C -0.293 4.293 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.259 0.741 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.179 0.821 39 H 0.208 0.792 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 -11.198 -0.569 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.281 5.281 3 C 0.294 3.706 4 O -0.408 6.408 5 C -0.141 4.141 6 C 0.055 3.945 7 H 0.022 0.978 8 C -0.595 4.595 9 H 0.056 0.944 10 C -0.223 4.223 11 N -0.579 5.579 12 Si 0.924 3.076 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.218 1.218 16 C -0.053 4.053 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.162 4.162 20 C -0.143 4.143 21 C -0.170 4.170 22 C 0.016 3.984 23 C -0.188 4.188 24 C -0.315 4.315 25 S 0.356 5.644 26 C -0.432 4.432 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.196 0.804 39 H 0.225 0.775 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.646 -11.403 0.081 16.299 hybrid contribution -1.938 0.482 -0.890 2.186 sum -13.584 -10.920 -0.810 17.448 Atomic orbital electron populations 1.22295 0.75529 1.05695 1.04162 1.45743 1.08888 1.02813 1.70702 1.21371 0.87912 0.85957 0.75324 1.90573 1.16398 1.86540 1.47318 1.21579 0.98317 0.90438 1.03753 1.17692 0.91828 0.88247 0.96729 0.97777 1.21795 1.01508 1.38206 0.97964 0.94448 1.26676 0.98671 0.93060 1.03900 1.70813 1.42325 1.39805 1.04967 0.83165 0.74691 0.76634 0.73156 1.19676 1.20789 1.21755 1.20533 0.93737 0.97828 0.93241 1.21000 0.97598 0.97784 0.97560 1.21405 0.99775 0.94010 0.99004 1.21310 1.00475 1.00640 0.93726 1.21293 0.97382 0.95908 0.99758 1.21110 1.00997 0.96607 0.98272 1.17385 0.90756 0.87349 1.02863 1.20048 1.02926 0.88663 1.07151 1.25871 0.94413 1.04208 1.07055 1.84065 1.09692 0.97638 1.72957 1.26184 0.99642 1.01101 1.16238 0.90164 0.87957 0.89165 0.88074 0.88479 0.93022 0.86759 0.83903 0.83574 0.84796 0.88798 0.80426 0.77536 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 9.75 127.77 1.25 2.48 16 2 N -0.56 -17.77 3.12 -658.35 -2.05 -19.83 16 3 C 0.50 21.06 7.36 87.66 0.64 21.70 16 4 O -0.53 -28.02 11.87 -3.13 -0.04 -28.06 16 5 C -0.10 -3.89 3.39 29.85 0.10 -3.79 16 6 C 0.07 3.66 1.24 -12.29 -0.02 3.64 16 7 H 0.00 0.23 6.42 -2.39 -0.02 0.22 16 8 C -0.56 -31.16 6.40 25.60 0.16 -31.00 16 9 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 10 C -0.02 -1.45 5.45 84.65 0.46 -0.99 16 11 N -0.94 -60.14 13.63 21.45 0.29 -59.85 16 12 Si 1.10 54.85 29.91 68.60 2.05 56.90 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 16 C -0.05 -2.34 4.64 -19.87 -0.09 -2.43 16 17 C -0.12 -4.73 8.89 22.27 0.20 -4.54 16 18 C -0.12 -4.00 10.05 22.27 0.22 -3.77 16 19 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 20 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 21 C -0.15 -6.40 9.37 22.27 0.21 -6.19 16 22 C 0.12 3.90 6.41 36.84 0.24 4.13 16 23 C -0.16 -3.43 9.26 21.30 0.20 -3.24 16 24 C -0.18 -3.53 11.22 66.72 0.75 -2.78 16 25 S 0.10 2.59 23.33 -56.49 -1.32 1.27 16 26 C -0.29 -10.96 10.00 66.81 0.67 -10.29 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.37 6.75 -2.39 -0.02 1.35 16 29 H 0.09 1.60 6.45 -2.39 -0.02 1.58 16 30 H 0.10 3.51 7.35 -2.38 -0.02 3.49 16 31 H 0.10 3.14 8.04 -2.39 -0.02 3.12 16 32 H 0.26 16.65 6.34 -92.70 -0.59 16.06 16 33 H 0.11 4.36 7.82 -2.91 -0.02 4.33 16 34 H 0.14 3.57 8.06 -2.92 -0.02 3.55 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.09 4.13 7.95 -2.91 -0.02 4.10 16 38 H 0.18 2.51 6.86 -2.91 -0.02 2.49 16 39 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.16 7.35 5.39 -2.91 -0.02 7.34 16 Total: -1.00 -78.94 344.24 5.60 -73.33 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.23 Total: 21.59 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 5.44 Total: -45.36 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.76 Total: -79.68 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.04 Total: -28.06 kcal Atomic # 14 Polarization: 54.85 SS G_CDS: 2.05 Total: 56.90 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.32 Total: 1.27 kcal Total: -78.94 5.60 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892558051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.452 kcal (2) G-P(sol) polarization free energy of solvation -78.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds