Wall clock time and date at job start Tue Mar 31 2020 11:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47474 * 319.63193 * 3 2 1 5 5 N 1.46499 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99498 * 270.00101 * 5 4 3 7 7 C 1.50700 * 109.46945 * 269.99380 * 6 5 4 8 8 H 1.08000 * 120.00070 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00198 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99764 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00237 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47413 * 60.00061 * 11 9 7 13 13 H 1.48506 * 109.47099 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46998 * 299.99820 * 11 9 7 15 15 C 1.34768 * 120.00174 * 89.99957 * 5 4 3 16 16 O 1.21632 * 120.00177 * 180.02562 * 15 5 4 17 17 C 1.47199 * 120.00122 * 359.97438 * 15 5 4 18 18 C 1.41245 * 120.33715 * 270.00414 * 17 15 5 19 19 C 1.41642 * 133.62375 * 359.72397 * 18 17 15 20 20 C 1.34451 * 107.84513 * 180.02562 * 19 18 17 21 21 N 1.36661 * 109.60464 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.57312 * 180.02562 * 21 20 19 23 23 C 1.37966 * 108.85380 * 0.02562 * 21 20 19 24 24 C 1.39052 * 133.29510 * 179.97438 * 23 21 20 25 25 C 1.37896 * 120.32610 * 180.02562 * 24 23 21 26 26 C 1.38639 * 120.78569 * 359.96609 * 25 24 23 27 27 F 1.35103 * 119.91271 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47215 * 199.63444 * 3 2 1 29 29 H 1.09005 * 109.47502 * 79.62840 * 3 2 1 30 30 H 1.09002 * 109.47294 * 59.99537 * 4 3 2 31 31 H 1.09005 * 109.46975 * 300.00430 * 4 3 2 32 32 H 1.08997 * 109.47388 * 29.99738 * 6 5 4 33 33 H 1.09004 * 109.46431 * 150.00361 * 6 5 4 34 34 H 0.96999 * 119.99799 * 179.97438 * 10 9 7 35 35 H 1.08001 * 126.08109 * 0.03381 * 19 18 17 36 36 H 1.07999 * 125.19633 * 180.02562 * 20 19 18 37 37 H 1.08008 * 119.83466 * 0.02562 * 24 23 21 38 38 H 1.08009 * 119.60887 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1185 -1.0982 0.9343 5 7 4.5835 -1.0971 0.9348 6 6 5.3168 -1.9182 -0.0319 7 6 5.5689 -3.2824 0.5569 8 1 5.2176 -3.5146 1.5514 9 6 6.2479 -4.2339 -0.1741 10 7 6.6762 -3.9510 -1.3849 11 14 6.5597 -5.9251 0.5554 12 1 5.2624 -6.5745 0.8721 13 1 7.3043 -6.7570 -0.4239 14 1 7.3611 -5.7881 1.7981 15 6 5.2566 -0.3408 1.8243 16 8 6.4729 -0.3396 1.8244 17 6 4.5197 0.4847 2.7951 18 6 4.1626 1.8134 2.4759 19 6 4.3627 2.6326 1.3379 20 6 3.8020 3.8289 1.5876 21 7 3.2464 3.8232 2.8361 22 1 2.7817 4.5670 3.2503 23 6 3.4545 2.5864 3.4111 24 6 3.1118 2.0372 4.6418 25 6 3.4638 0.7394 4.9472 26 6 4.1622 -0.0394 4.0374 27 9 4.4976 -1.3090 4.3549 28 1 2.9709 0.9687 0.3453 29 1 2.9714 -0.1842 -1.0109 30 1 2.7556 -2.0663 0.5891 31 1 2.7551 -0.9134 1.9452 32 1 4.7281 -2.0191 -0.9436 33 1 6.2690 -1.4415 -0.2649 34 1 7.1542 -4.6203 -1.8990 35 1 4.8746 2.3471 0.4308 36 1 3.7916 4.6660 0.9054 37 1 2.5673 2.6300 5.3619 38 1 3.1913 0.3242 5.9064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155428669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:50 Heat of formation + Delta-G solvation = 13.160002 kcal Electronic energy + Delta-G solvation = -26156.778988 eV Core-core repulsion = 22300.740758 eV Total energy + Delta-G solvation = -3856.038230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.61238 -41.63541 -39.09919 -36.79467 -36.46899 -35.14560 -32.94890 -32.21780 -30.77678 -29.50296 -28.99045 -27.17066 -24.34574 -23.83018 -22.53260 -22.06187 -20.92124 -19.42409 -17.86541 -17.55051 -17.22788 -16.68052 -16.38640 -16.05545 -15.32119 -15.26300 -15.18541 -14.67704 -14.42458 -14.19792 -14.02661 -13.64255 -13.45192 -13.21405 -12.97023 -12.86075 -12.46445 -12.38149 -12.30325 -11.97982 -11.67528 -11.35909 -11.33568 -11.20820 -10.91846 -10.80881 -10.56055 -10.14732 -9.93462 -9.65989 -9.11061 -8.41015 -8.27289 -7.83750 -7.80334 -6.03041 -4.06948 0.70156 1.31922 2.54483 2.79178 2.86777 2.90239 3.23692 3.36521 3.40154 3.44846 3.50706 3.75397 4.21259 4.28708 4.47379 4.56800 4.77468 4.86013 5.03496 5.12803 5.17289 5.27186 5.32043 5.32987 5.50839 5.60871 5.76755 5.89678 5.91239 6.07437 6.14144 6.18100 6.49711 6.51025 6.88410 6.98320 7.26796 7.38264 7.46810 7.65559 7.93607 8.22537 8.25997 8.84146 9.00904 9.58251 11.05178 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.004802 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.254659 B = 5829.374672 C = 6450.593094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.056 4.056 4 C 0.121 3.879 5 N -0.584 5.584 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.559 3.441 16 O -0.519 6.519 17 C -0.103 4.103 18 C -0.051 4.051 19 C -0.202 4.202 20 C 0.060 3.940 21 N -0.587 5.587 22 H 0.418 0.582 23 C 0.074 3.926 24 C -0.089 4.089 25 C -0.135 4.135 26 C 0.105 3.895 27 F -0.127 7.127 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.130 0.870 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 17.085 7.993 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.097 4.097 4 C -0.006 4.006 5 N -0.315 5.315 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.344 3.656 16 O -0.395 6.395 17 C -0.108 4.108 18 C -0.056 4.056 19 C -0.227 4.227 20 C -0.068 4.068 21 N -0.190 5.190 22 H 0.256 0.744 23 C -0.034 4.034 24 C -0.109 4.109 25 C -0.155 4.155 26 C 0.084 3.916 27 F -0.106 7.106 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.148 0.852 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.990 17.047 7.842 21.258 hybrid contribution 0.476 -0.840 0.612 1.143 sum -9.514 16.207 8.454 20.607 Atomic orbital electron populations 1.81176 1.12984 1.09176 1.09308 1.29088 0.95079 0.92774 0.92729 1.20013 0.81484 1.03455 1.04771 1.21252 0.82052 0.98529 0.98734 1.48165 1.04971 1.43716 1.34656 1.19406 0.92613 0.89161 0.86213 1.21401 1.36626 0.96812 1.01819 0.92249 1.24892 0.95270 0.98878 0.94824 1.69911 1.38287 1.34950 1.10238 0.86578 0.78423 0.83587 0.78994 1.20223 1.21240 1.20117 1.17764 0.87202 0.79601 0.81005 1.90821 1.12935 1.65160 1.70541 1.19582 1.01790 0.94398 0.95031 1.17715 1.00582 0.92007 0.95332 1.20753 1.08496 0.93408 1.00025 1.21957 0.98501 0.99611 0.86716 1.41812 1.50260 1.12170 1.14738 0.74418 1.18154 1.03243 0.86412 0.95541 1.19827 1.02157 0.94874 0.94091 1.20671 1.01086 0.93782 0.99917 1.17364 1.00250 0.80432 0.93544 1.91569 1.90434 1.35856 1.92722 0.87067 0.86528 0.88662 0.91009 0.94434 0.93401 0.92672 0.83143 0.80782 0.85200 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.02 18.54 42.15 0.78 -6.24 16 2 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 3 C -0.06 -0.69 6.03 -29.52 -0.18 -0.87 16 4 C 0.12 1.89 5.18 -4.04 -0.02 1.87 16 5 N -0.58 -11.72 2.46 -176.41 -0.43 -12.15 16 6 C 0.24 6.00 5.16 -5.19 -0.03 5.97 16 7 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 11 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 C 0.56 11.66 6.60 -12.63 -0.08 11.57 16 16 O -0.52 -13.21 16.69 5.25 0.09 -13.13 16 17 C -0.10 -1.72 3.95 -104.65 -0.41 -2.14 16 18 C -0.05 -0.69 5.30 -106.61 -0.57 -1.26 16 19 C -0.20 -2.30 8.83 -39.62 -0.35 -2.65 16 20 C 0.06 0.47 11.84 -16.74 -0.20 0.27 16 21 N -0.59 -4.44 6.14 -10.64 -0.07 -4.50 16 22 H 0.42 1.71 8.96 -40.82 -0.37 1.34 16 23 C 0.07 0.80 7.26 -83.96 -0.61 0.19 16 24 C -0.09 -0.87 10.05 -39.40 -0.40 -1.26 16 25 C -0.13 -1.56 9.97 -39.56 -0.39 -1.96 16 26 C 0.11 1.66 6.82 -38.97 -0.27 1.39 16 27 F -0.13 -2.33 16.81 2.25 0.04 -2.29 16 28 H 0.11 1.28 5.23 -51.93 -0.27 1.01 16 29 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 31 H 0.07 1.07 6.53 -51.93 -0.34 0.73 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -35.56 342.84 -6.81 -42.37 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.86 Total: -1.43 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -4.24 Total: 0.57 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 1.02 Total: -48.04 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.56 -6.81 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155428669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.533 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds