Wall clock time and date at job start Tue Mar 31 2020 11:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47474 * 319.63193 * 3 2 1 5 5 N 1.46499 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99498 * 270.00101 * 5 4 3 7 7 C 1.50700 * 109.46945 * 269.99380 * 6 5 4 8 8 H 1.08000 * 120.00070 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00198 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99764 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00237 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47413 * 60.00061 * 11 9 7 13 13 H 1.48506 * 109.47099 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46998 * 299.99820 * 11 9 7 15 15 C 1.34768 * 120.00174 * 89.99957 * 5 4 3 16 16 O 1.21632 * 120.00177 * 180.02562 * 15 5 4 17 17 C 1.47199 * 120.00122 * 359.97438 * 15 5 4 18 18 C 1.41245 * 120.33715 * 270.00414 * 17 15 5 19 19 C 1.41642 * 133.62375 * 359.72397 * 18 17 15 20 20 C 1.34451 * 107.84513 * 180.02562 * 19 18 17 21 21 N 1.36661 * 109.60464 * 359.97438 * 20 19 18 22 22 H 0.96998 * 125.57312 * 180.02562 * 21 20 19 23 23 C 1.37966 * 108.85380 * 0.02562 * 21 20 19 24 24 C 1.39052 * 133.29510 * 179.97438 * 23 21 20 25 25 C 1.37896 * 120.32610 * 180.02562 * 24 23 21 26 26 C 1.38639 * 120.78569 * 359.96609 * 25 24 23 27 27 F 1.35103 * 119.91271 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47215 * 199.63444 * 3 2 1 29 29 H 1.09005 * 109.47502 * 79.62840 * 3 2 1 30 30 H 1.09002 * 109.47294 * 59.99537 * 4 3 2 31 31 H 1.09005 * 109.46975 * 300.00430 * 4 3 2 32 32 H 1.08997 * 109.47388 * 29.99738 * 6 5 4 33 33 H 1.09004 * 109.46431 * 150.00361 * 6 5 4 34 34 H 0.96999 * 119.99799 * 179.97438 * 10 9 7 35 35 H 1.08001 * 126.08109 * 0.03381 * 19 18 17 36 36 H 1.07999 * 125.19633 * 180.02562 * 20 19 18 37 37 H 1.08008 * 119.83466 * 0.02562 * 24 23 21 38 38 H 1.08009 * 119.60887 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1185 -1.0982 0.9343 5 7 4.5835 -1.0971 0.9348 6 6 5.3168 -1.9182 -0.0319 7 6 5.5689 -3.2824 0.5569 8 1 5.2176 -3.5146 1.5514 9 6 6.2479 -4.2339 -0.1741 10 7 6.6762 -3.9510 -1.3849 11 14 6.5597 -5.9251 0.5554 12 1 5.2624 -6.5745 0.8721 13 1 7.3043 -6.7570 -0.4239 14 1 7.3611 -5.7881 1.7981 15 6 5.2566 -0.3408 1.8243 16 8 6.4729 -0.3396 1.8244 17 6 4.5197 0.4847 2.7951 18 6 4.1626 1.8134 2.4759 19 6 4.3627 2.6326 1.3379 20 6 3.8020 3.8289 1.5876 21 7 3.2464 3.8232 2.8361 22 1 2.7817 4.5670 3.2503 23 6 3.4545 2.5864 3.4111 24 6 3.1118 2.0372 4.6418 25 6 3.4638 0.7394 4.9472 26 6 4.1622 -0.0394 4.0374 27 9 4.4976 -1.3090 4.3549 28 1 2.9709 0.9687 0.3453 29 1 2.9714 -0.1842 -1.0109 30 1 2.7556 -2.0663 0.5891 31 1 2.7551 -0.9134 1.9452 32 1 4.7281 -2.0191 -0.9436 33 1 6.2690 -1.4415 -0.2649 34 1 7.1542 -4.6203 -1.8990 35 1 4.8746 2.3471 0.4308 36 1 3.7916 4.6660 0.9054 37 1 2.5673 2.6300 5.3619 38 1 3.1913 0.3242 5.9064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155428669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:50 Heat of formation + Delta-G solvation = -9.991175 kcal Electronic energy + Delta-G solvation = -26157.782898 eV Core-core repulsion = 22300.740758 eV Total energy + Delta-G solvation = -3857.042140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.88592 -42.49148 -40.63467 -38.04500 -37.43823 -36.73485 -34.90092 -33.27664 -32.21517 -30.57680 -29.86137 -28.95159 -25.70898 -25.40695 -23.90090 -23.01029 -21.82722 -20.65771 -19.03141 -18.81874 -18.37174 -18.28746 -17.96499 -17.52431 -16.68064 -16.48485 -16.20069 -16.12050 -15.72054 -15.53459 -15.26653 -14.86195 -14.60287 -14.36265 -14.18787 -14.06568 -13.69081 -13.65225 -13.60485 -13.38235 -13.27677 -12.97970 -12.77437 -12.57329 -12.37333 -12.25087 -12.16668 -11.96040 -11.72347 -10.90019 -10.71243 -10.58973 -9.58374 -9.15726 -8.71215 -8.19354 -6.31421 -0.23212 0.36806 1.38590 1.42296 1.48875 1.54841 1.72956 1.74842 1.81796 2.17842 2.25136 2.43232 2.63616 3.02875 3.12227 3.26955 3.54350 3.84586 3.95354 4.04080 4.12572 4.19881 4.27511 4.45583 4.53421 4.71929 4.74345 4.87090 4.94924 5.03892 5.06566 5.17459 5.26895 5.29624 5.55914 5.61372 5.65391 5.82736 6.02997 6.10624 6.52478 6.60384 6.73087 6.75928 7.24006 7.41194 8.87606 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.004802 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.254659 B = 5829.374672 C = 6450.593094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.246 3.754 3 C -0.040 4.040 4 C 0.119 3.881 5 N -0.584 5.584 6 C 0.259 3.741 7 C -0.545 4.545 8 H 0.046 0.954 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.957 3.043 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.282 1.282 15 C 0.560 3.440 16 O -0.584 6.584 17 C -0.138 4.138 18 C -0.065 4.065 19 C -0.251 4.251 20 C 0.104 3.896 21 N -0.565 5.565 22 H 0.441 0.559 23 C 0.068 3.932 24 C -0.059 4.059 25 C -0.142 4.142 26 C 0.081 3.919 27 F -0.154 7.154 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.267 0.733 35 H 0.137 0.863 36 H 0.222 0.778 37 H 0.178 0.822 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 19.746 9.257 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.072 4.072 3 C -0.081 4.081 4 C -0.005 4.005 5 N -0.313 5.313 6 C 0.139 3.861 7 C -0.584 4.584 8 H 0.065 0.935 9 C -0.184 4.184 10 N -0.561 5.561 11 Si 0.782 3.218 12 H -0.188 1.188 13 H -0.200 1.200 14 H -0.208 1.208 15 C 0.348 3.652 16 O -0.464 6.464 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.275 4.275 20 C -0.025 4.025 21 N -0.169 5.169 22 H 0.283 0.717 23 C -0.040 4.040 24 C -0.078 4.078 25 C -0.161 4.161 26 C 0.060 3.940 27 F -0.133 7.133 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.238 0.762 37 H 0.195 0.805 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.456 19.740 9.125 25.061 hybrid contribution 1.199 -1.491 0.213 1.926 sum -11.257 18.248 9.338 23.386 Atomic orbital electron populations 1.81206 1.13777 1.10204 1.10381 1.28958 0.94738 0.91773 0.91705 1.19846 0.80835 1.02868 1.04507 1.21376 0.79314 0.99557 1.00286 1.48051 1.06667 1.42847 1.33747 1.18914 0.91570 0.88274 0.87344 1.21661 1.36955 0.98389 1.01388 0.93523 1.25679 0.94932 1.02523 0.95228 1.70004 1.38730 1.36170 1.11226 0.85628 0.78740 0.79423 0.78003 1.18805 1.20048 1.20784 1.18468 0.86684 0.79127 0.80963 1.90755 1.15885 1.67386 1.72372 1.19243 1.04771 0.95549 0.94669 1.17915 1.00978 0.91055 0.97142 1.20832 1.11613 0.95159 0.99892 1.22569 0.94356 0.99053 0.86551 1.41854 1.49091 1.11607 1.14307 0.71690 1.18279 1.02951 0.87296 0.95507 1.20327 0.99537 0.93963 0.94020 1.20930 1.00794 0.94294 1.00120 1.17878 1.01764 0.79994 0.94360 1.91489 1.90997 1.37881 1.92953 0.85571 0.85420 0.89272 0.90024 0.93938 0.97390 0.92373 0.84470 0.76169 0.80459 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.27 18.54 20.00 0.37 -13.90 16 2 C 0.25 6.31 15.43 89.44 1.38 7.69 16 3 C -0.04 -0.97 6.03 28.79 0.17 -0.79 16 4 C 0.12 3.85 5.18 86.38 0.45 4.30 16 5 N -0.58 -24.92 2.46 -830.28 -2.04 -26.95 16 6 C 0.26 13.56 5.16 85.63 0.44 14.01 16 7 C -0.55 -31.63 9.39 25.60 0.24 -31.39 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 9 C 0.02 0.92 5.46 84.65 0.46 1.38 16 10 N -0.92 -54.87 13.29 21.45 0.28 -54.58 16 11 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 15 C 0.56 25.04 6.60 86.60 0.57 25.61 16 16 O -0.58 -32.41 16.69 -4.13 -0.07 -32.47 16 17 C -0.14 -4.76 3.95 -19.88 -0.08 -4.84 16 18 C -0.06 -1.71 5.30 -21.15 -0.11 -1.82 16 19 C -0.25 -5.37 8.83 22.24 0.20 -5.17 16 20 C 0.10 1.18 11.84 83.07 0.98 2.17 16 21 N -0.56 -5.61 6.14 -187.58 -1.15 -6.76 16 22 H 0.44 0.78 8.96 -92.71 -0.83 -0.05 16 23 C 0.07 1.22 7.26 38.92 0.28 1.51 16 24 C -0.06 -0.89 10.05 22.38 0.22 -0.67 16 25 C -0.14 -2.99 9.97 22.28 0.22 -2.77 16 26 C 0.08 2.60 6.82 22.67 0.15 2.75 16 27 F -0.15 -5.99 16.81 44.97 0.76 -5.24 16 28 H 0.13 2.81 5.23 -2.39 -0.01 2.80 16 29 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 31 H 0.08 2.49 6.53 -2.38 -0.02 2.48 16 32 H 0.04 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.01 0.48 7.42 -2.39 -0.02 0.46 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.22 0.45 8.06 -2.91 -0.02 0.42 16 37 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -84.57 342.84 6.07 -78.50 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 0.30 Total: 1.71 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.59 Total: 11.97 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -2.54 Total: -102.20 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.07 Total: -32.47 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.76 Total: -5.24 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -84.57 6.07 -78.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155428669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.510 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds