Wall clock time and date at job start Tue Mar 31 2020 11:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99917 * 2 1 4 4 O 1.42906 * 109.46831 * 79.15350 * 3 2 1 5 5 C 1.42901 * 114.00109 * 284.87743 * 4 3 2 6 6 C 1.50692 * 109.47010 * 199.15267 * 3 2 1 7 7 N 1.31961 * 120.05335 * 16.79053 * 6 3 2 8 8 C 1.32236 * 120.08750 * 179.97438 * 7 6 3 9 9 C 1.38244 * 120.18084 * 359.97438 * 8 7 6 10 10 N 1.32198 * 120.10073 * 0.02562 * 9 8 7 11 11 C 1.32686 * 119.91312 * 0.02562 * 10 9 8 12 12 N 1.39151 * 120.08747 * 179.97438 * 11 10 9 13 13 C 1.38379 * 120.00182 * 354.36280 * 12 11 10 14 14 C 1.38967 * 120.00461 * 302.75990 * 13 12 11 15 15 H 1.07999 * 120.00368 * 158.24476 * 14 13 12 16 16 C 1.40851 * 119.99434 * 338.24560 * 14 13 12 17 17 N 1.30330 * 120.00182 * 350.80070 * 16 14 13 18 18 Si 1.86802 * 119.99723 * 170.80087 * 16 14 13 19 19 H 1.48500 * 109.47174 * 89.99985 * 18 16 14 20 20 H 1.48493 * 109.47190 * 209.99989 * 18 16 14 21 21 H 1.48497 * 109.47267 * 330.00158 * 18 16 14 22 22 C 1.41147 * 119.99896 * 122.75463 * 13 12 11 23 23 C 1.43196 * 120.00206 * 174.74257 * 22 13 12 24 24 N 9.01208 * 121.34559 * 8.38911 * 2 1 3 25 25 C 1.43199 * 119.99728 * 354.74101 * 22 13 12 26 26 N 6.48849 * 100.76378 * 348.33189 * 2 1 3 27 27 H 1.08999 * 109.47416 * 302.62443 * 1 2 3 28 28 H 1.09003 * 109.47508 * 62.61829 * 1 2 3 29 29 H 1.09000 * 109.47578 * 182.62385 * 1 2 3 30 30 H 1.08995 * 109.47118 * 319.15897 * 3 2 1 31 31 H 1.08997 * 109.46731 * 79.55549 * 5 4 3 32 32 H 1.09002 * 109.46873 * 199.55097 * 5 4 3 33 33 H 1.08994 * 109.46912 * 319.55240 * 5 4 3 34 34 H 1.07994 * 119.91063 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.95300 * 179.74436 * 9 8 7 36 36 H 0.97003 * 119.99568 * 174.37262 * 12 11 10 37 37 H 0.97004 * 119.99868 * 185.04226 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.9723 1.8437 1.3233 5 6 0.6771 2.2865 1.7338 6 6 3.4406 1.2185 -0.4661 7 7 3.8642 0.1425 -1.1018 8 6 5.1191 0.0656 -1.5116 9 6 5.9922 1.1114 -1.2767 10 7 5.5756 2.1928 -0.6405 11 6 4.3175 2.2735 -0.2268 12 7 3.8752 3.4099 0.4437 13 6 4.7732 4.4066 0.7828 14 6 5.8788 4.1075 1.5698 15 1 6.7448 4.7526 1.5522 16 6 5.8700 2.9628 2.3906 17 7 4.7687 2.2848 2.5515 18 14 7.4369 2.4166 3.2484 19 1 7.5243 3.0666 4.5807 20 1 7.4202 0.9414 3.4176 21 1 8.6120 2.8076 2.4290 22 6 4.5663 5.7271 0.3293 23 6 5.4308 6.7797 0.7713 24 7 6.1171 7.6144 1.1229 25 6 3.4920 6.0142 -0.5728 26 7 2.6408 6.2426 -1.2892 27 1 -0.3634 0.5540 0.8655 28 1 -0.3634 0.4726 -0.9125 29 1 -0.3634 -1.0266 0.0470 30 1 1.4478 1.9536 -0.6720 31 1 0.0804 1.4279 2.0417 32 1 0.7778 2.9778 2.5705 33 1 0.1854 2.7914 0.9024 34 1 5.4629 -0.8165 -2.0312 35 1 7.0174 1.0430 -1.6093 36 1 2.9374 3.5032 0.6734 37 1 4.7438 1.5404 3.1730 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:12 Heat of formation + Delta-G solvation = 39.530889 kcal Electronic energy + Delta-G solvation = -26696.073451 eV Core-core repulsion = 22861.098711 eV Total energy + Delta-G solvation = -3834.974740 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76410 -38.83776 -37.47084 -35.84329 -35.25815 -34.68204 -33.76480 -33.38636 -31.59657 -29.30711 -27.96920 -27.06794 -25.91932 -25.38574 -23.56988 -22.21740 -21.24156 -19.03521 -18.12175 -17.32816 -17.23648 -16.76602 -16.66074 -16.19395 -16.04667 -15.00434 -14.74408 -14.40530 -14.21168 -13.85864 -13.67137 -13.37198 -13.22080 -12.76363 -12.56002 -12.43304 -12.24221 -11.77467 -11.66558 -11.63214 -11.58584 -11.48440 -11.32807 -11.11861 -10.92079 -10.90879 -10.86092 -10.49479 -10.07623 -10.01140 -9.70654 -9.61807 -8.54307 -8.22802 -7.66187 -6.94791 -5.35796 1.33463 1.75919 2.37667 2.75811 2.81803 2.93803 3.45117 3.47513 3.78727 3.81939 3.91045 4.07641 4.29179 4.36470 4.38598 4.72920 4.83975 4.92806 5.07824 5.15368 5.22896 5.27048 5.30386 5.47366 5.51060 5.59706 5.69547 5.71644 5.80630 5.88291 6.29750 6.39299 6.65780 7.07359 7.11841 7.15800 7.32908 7.55068 7.80565 7.86385 8.22284 8.28242 8.68992 8.98360 9.18800 9.30036 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.006749 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.253224 B = 4147.639131 C = 5051.453884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.367 6.367 3 C 0.310 3.690 4 O -0.358 6.358 5 C 0.017 3.983 6 C 0.010 3.990 7 N -0.374 5.374 8 C -0.046 4.046 9 C 0.110 3.890 10 N -0.478 5.478 11 C 0.428 3.572 12 N -0.615 5.615 13 C 0.376 3.624 14 C -0.343 4.343 15 H 0.110 0.890 16 C 0.068 3.932 17 N -0.702 5.702 18 Si 0.921 3.079 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.248 1.248 22 C -0.319 4.319 23 C 0.328 3.672 24 N -0.537 5.537 25 C 0.310 3.690 26 N -0.543 5.543 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.413 0.587 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -11.351 0.270 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.287 6.287 3 C 0.213 3.787 4 O -0.277 6.277 5 C -0.080 4.080 6 C -0.140 4.140 7 N -0.089 5.089 8 C -0.208 4.208 9 C -0.053 4.053 10 N -0.199 5.199 11 C 0.188 3.812 12 N -0.240 5.240 13 C 0.272 3.728 14 C -0.371 4.371 15 H 0.128 0.872 16 C -0.164 4.164 17 N -0.320 5.320 18 Si 0.743 3.257 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.171 1.171 22 C -0.337 4.337 23 C 0.020 3.980 24 N -0.220 5.220 25 C 0.004 3.996 26 N -0.226 5.226 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.255 0.745 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.092 -9.970 -0.054 10.777 hybrid contribution -0.154 -0.669 0.579 0.898 sum -4.245 -10.638 0.524 11.466 Atomic orbital electron populations 1.23164 0.81824 1.03240 1.00339 1.88175 1.18822 1.27976 1.93689 1.21347 0.89885 0.83069 0.84391 1.88308 1.28937 1.78619 1.31823 1.23122 0.85302 0.99051 1.00478 1.20286 0.95046 0.92357 1.06333 1.67800 1.15631 1.21156 1.04320 1.23146 0.90057 1.01278 1.06350 1.23551 1.00767 0.88863 0.92153 1.68282 1.13450 1.25102 1.13083 1.18564 0.89043 0.86278 0.87303 1.41675 1.10877 1.15437 1.56039 1.16667 0.86071 0.83390 0.86626 1.20175 1.00981 1.03807 1.12098 0.87239 1.26536 0.98996 0.94292 0.96591 1.69557 1.27252 1.12521 1.22692 0.86000 0.80840 0.78740 0.80152 1.18374 1.19385 1.17057 1.12819 1.07150 0.89574 1.24196 1.24652 0.91165 0.91304 0.90847 1.81064 1.14180 1.11125 1.15636 1.25254 0.91455 0.92133 0.90757 1.81038 1.15656 1.08877 1.16981 0.92986 0.94115 0.89541 0.91972 0.93185 0.89113 0.93896 0.82359 0.81974 0.74525 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.63 101.05 1.07 1.19 16 2 O -0.37 -5.87 10.13 -59.04 -0.60 -6.47 16 3 C 0.31 5.10 2.81 36.00 0.10 5.20 16 4 O -0.36 -5.81 7.98 -59.04 -0.47 -6.28 16 5 C 0.02 0.20 9.80 101.05 0.99 1.19 16 6 C 0.01 0.18 6.53 -82.16 -0.54 -0.35 16 7 N -0.37 -6.68 9.86 -9.12 -0.09 -6.77 16 8 C -0.05 -0.70 11.21 -17.38 -0.19 -0.89 16 9 C 0.11 1.70 11.22 -17.39 -0.20 1.51 16 10 N -0.48 -9.13 8.87 -12.21 -0.11 -9.23 16 11 C 0.43 8.35 5.59 -154.58 -0.86 7.48 16 12 N -0.61 -12.22 2.97 -9.64 -0.03 -12.25 16 13 C 0.38 8.03 5.53 -83.53 -0.46 7.56 16 14 C -0.34 -7.23 7.66 -38.32 -0.29 -7.53 16 15 H 0.11 2.36 7.14 -52.49 -0.37 1.98 16 16 C 0.07 1.33 4.84 -17.20 -0.08 1.25 16 17 N -0.70 -13.77 10.92 55.60 0.61 -13.16 16 18 Si 0.92 15.54 29.58 -169.99 -5.03 10.51 16 19 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 20 H -0.27 -4.53 7.11 56.52 0.40 -4.12 16 21 H -0.25 -4.25 7.11 56.52 0.40 -3.84 16 22 C -0.32 -7.10 5.88 -104.95 -0.62 -7.72 16 23 C 0.33 7.63 13.97 -22.46 -0.31 7.31 16 24 N -0.54 -12.95 18.54 41.85 0.78 -12.17 16 25 C 0.31 7.05 14.82 -22.48 -0.33 6.72 16 26 N -0.54 -12.65 18.54 41.83 0.78 -11.87 16 27 H 0.05 0.52 4.44 -51.93 -0.23 0.29 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.96 7.59 -51.93 -0.39 0.56 16 31 H 0.05 0.53 5.87 -51.93 -0.30 0.22 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.46 7.72 -51.93 -0.40 0.06 16 34 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.41 7.90 6.14 -40.82 -0.25 7.65 16 37 H 0.30 5.60 8.29 -40.82 -0.34 5.26 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -27.74 336.93 -4.02 -31.76 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.20 Total: 7.92 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: -1.73 Total: 22.94 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: 1.93 Total: -65.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.07 Total: -12.75 kcal Atomic # 14 Polarization: 15.54 SS G_CDS: -5.03 Total: 10.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.74 -4.02 -31.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.292 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds