Wall clock time and date at job start Tue Mar 31 2020 11:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00038 * 2 1 4 4 C 1.53004 * 109.46814 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47298 * 65.00116 * 4 3 2 6 6 C 1.35775 * 116.99954 * 179.97438 * 5 4 3 7 7 C 1.38898 * 119.98206 * 179.72712 * 6 5 4 8 8 N 1.32100 * 120.01664 * 179.71203 * 7 6 5 9 9 C 1.32702 * 119.98237 * 0.56044 * 8 7 6 10 10 N 1.39394 * 120.02081 * 179.73099 * 9 8 7 11 11 C 1.38327 * 120.00187 * 173.72032 * 10 9 8 12 12 C 1.38987 * 120.00780 * 299.79342 * 11 10 9 13 13 H 1.07996 * 120.00417 * 158.82291 * 12 11 10 14 14 C 1.40840 * 119.99473 * 338.82496 * 12 11 10 15 15 N 1.30335 * 120.00231 * 350.89515 * 14 12 11 16 16 Si 1.86801 * 120.00271 * 170.89559 * 14 12 11 17 17 H 1.48508 * 109.46767 * 59.99787 * 16 14 12 18 18 H 1.48493 * 109.47301 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47178 * 300.00398 * 16 14 12 20 20 C 1.41162 * 119.99749 * 119.79135 * 11 10 9 21 21 C 1.43196 * 119.99952 * 185.26721 * 20 11 10 22 22 N 9.18187 * 154.54292 * 336.16893 * 4 1 2 23 23 C 1.43196 * 120.00010 * 5.26538 * 20 11 10 24 24 N 8.71132 * 132.17768 * 7.71057 * 4 1 2 25 25 C 1.39048 * 119.96474 * 359.71529 * 9 8 7 26 26 N 1.32101 * 119.98111 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.46984 * 300.00090 * 1 2 3 28 28 H 1.08996 * 109.47485 * 59.99640 * 1 2 3 29 29 H 1.08996 * 109.47508 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46899 * 59.99940 * 3 2 1 31 31 H 1.08998 * 109.46728 * 299.99911 * 3 2 1 32 32 H 1.09003 * 109.47106 * 304.99844 * 4 3 2 33 33 H 1.08998 * 109.46581 * 185.00521 * 4 3 2 34 34 H 1.08002 * 119.99213 * 359.97438 * 7 6 5 35 35 H 0.97005 * 119.99772 * 353.72978 * 10 9 8 36 36 H 0.97002 * 120.00641 * 185.04551 * 15 14 12 37 37 H 1.07993 * 120.01257 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3008 0.3988 -1.3840 7 6 5.7859 -0.1888 -2.5453 8 7 7.0859 -0.3598 -2.7060 9 6 7.9276 0.0198 -1.7529 10 7 9.2991 -0.1654 -1.9194 11 6 10.1842 0.3459 -0.9874 12 6 10.2253 1.7139 -0.7453 13 1 10.6371 2.0863 0.1810 14 6 9.7296 2.6146 -1.7079 15 7 9.3976 2.1846 -2.8927 16 14 9.5480 4.4254 -1.2869 17 1 10.8747 4.9842 -0.9222 18 1 9.0101 5.1555 -2.4627 19 1 8.6156 4.5761 -0.1409 20 6 11.0459 -0.5217 -0.2822 21 6 11.8815 -0.0085 0.7613 22 7 12.5433 0.3962 1.5944 23 6 11.0844 -1.9150 -0.6104 24 7 11.1139 -3.0235 -0.8645 25 6 7.4407 0.6028 -0.5882 26 7 6.1409 0.7787 -0.4315 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9785 2.1764 0.0890 34 1 5.1004 -0.5021 -3.3188 35 1 9.6328 -0.6528 -2.6888 36 1 9.1258 2.8143 -3.5787 37 1 8.1250 0.9116 0.1881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:00 Heat of formation + Delta-G solvation = 15.494350 kcal Electronic energy + Delta-G solvation = -24932.162320 eV Core-core repulsion = 21096.145277 eV Total energy + Delta-G solvation = -3836.017043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.112 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14685 -39.94545 -38.95970 -38.22729 -36.95767 -36.48743 -35.30443 -34.72194 -32.62471 -31.59205 -29.43374 -28.86048 -27.20912 -25.82285 -24.76874 -23.29424 -22.95268 -20.81289 -19.56086 -19.19082 -18.97948 -17.89054 -17.76298 -17.69608 -16.83463 -16.66421 -16.45585 -16.01490 -15.58779 -15.34729 -15.03480 -14.92908 -14.54420 -14.36707 -14.07816 -13.88653 -13.44120 -13.36563 -13.34599 -13.24248 -13.15210 -12.85050 -12.70986 -12.69726 -12.55785 -12.31786 -12.12139 -12.05083 -11.75824 -11.55962 -11.11024 -10.64923 -10.20544 -9.75636 -9.23319 -8.28221 -7.16644 0.02855 0.27094 0.73291 1.35679 1.48621 1.52901 1.94054 2.03488 2.06735 2.23166 2.25419 2.55824 2.63603 2.83614 2.93109 3.31713 3.39702 3.62082 3.67204 3.86880 3.99531 4.18686 4.32007 4.47480 4.49457 4.56783 4.57291 4.60407 4.66339 4.72417 4.74522 4.89553 5.03843 5.36517 5.56484 5.96446 6.05955 6.16735 6.26349 6.31007 6.64844 6.68991 7.11004 7.22038 7.35386 7.67493 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003878 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.972266 B = 7219.272876 C = 8150.129215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.065 3.935 4 C 0.068 3.932 5 O -0.303 6.303 6 C 0.190 3.810 7 C 0.091 3.909 8 N -0.479 5.479 9 C 0.354 3.646 10 N -0.632 5.632 11 C 0.377 3.623 12 C -0.371 4.371 13 H 0.115 0.885 14 C 0.046 3.954 15 N -0.720 5.720 16 Si 0.972 3.028 17 H -0.252 1.252 18 H -0.262 1.262 19 H -0.250 1.250 20 C -0.317 4.317 21 C 0.331 3.669 22 N -0.552 5.552 23 C 0.315 3.685 24 N -0.557 5.557 25 C 0.032 3.968 26 N -0.469 5.469 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.196 0.804 35 H 0.406 0.594 36 H 0.312 0.688 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.919 8.259 -1.752 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.008 4.008 5 O -0.210 6.210 6 C 0.008 3.992 7 C -0.072 4.072 8 N -0.201 5.201 9 C 0.118 3.882 10 N -0.257 5.257 11 C 0.272 3.728 12 C -0.398 4.398 13 H 0.133 0.867 14 C -0.185 4.185 15 N -0.338 5.338 16 Si 0.791 3.209 17 H -0.175 1.175 18 H -0.186 1.186 19 H -0.174 1.174 20 C -0.336 4.336 21 C 0.024 3.976 22 N -0.235 5.235 23 C 0.009 3.991 24 N -0.240 5.240 25 C -0.134 4.134 26 N -0.197 5.197 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.213 0.787 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.099 7.020 -1.169 18.521 hybrid contribution 0.034 0.855 -0.389 0.940 sum -17.065 7.875 -1.558 18.859 Atomic orbital electron populations 1.22921 0.79279 1.03722 1.01096 1.87938 1.21702 1.28444 1.95672 1.22718 0.90116 0.85310 1.02930 1.22788 0.94091 0.98680 0.85199 1.86241 1.16286 1.77782 1.40729 1.20676 0.85203 0.99829 0.93494 1.22856 0.90849 0.97163 0.96343 1.67943 1.02742 1.20790 1.28608 1.18843 0.85683 0.93069 0.90594 1.40945 1.00409 1.57705 1.26658 1.16673 0.84095 0.90066 0.81968 1.20551 1.25451 0.90202 1.03593 0.86700 1.27041 0.90986 1.06632 0.93847 1.69511 1.19931 1.41304 1.03032 0.85267 0.80954 0.74495 0.80149 1.17549 1.18577 1.17358 1.12878 1.20657 0.84868 1.15172 1.24833 0.90437 0.91623 0.90726 1.81168 1.16159 1.10092 1.16100 1.25379 0.90782 0.91779 0.91163 1.81138 1.15101 1.12786 1.15020 1.23015 0.90873 1.01399 0.98107 1.67878 1.03846 1.18204 1.29751 0.92575 0.93037 0.89073 0.88524 0.91249 0.92214 0.89585 0.78678 0.75673 0.87562 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.11 10.67 -144.35 -1.54 -10.65 16 3 C 0.07 1.15 6.32 71.98 0.45 1.60 16 4 C 0.07 1.59 5.70 71.98 0.41 2.00 16 5 O -0.30 -8.72 10.09 -86.40 -0.87 -9.59 16 6 C 0.19 6.12 7.49 84.74 0.63 6.76 16 7 C 0.09 2.83 11.17 84.81 0.95 3.78 16 8 N -0.48 -17.04 10.52 -192.04 -2.02 -19.06 16 9 C 0.35 13.17 6.17 132.82 0.82 13.99 16 10 N -0.63 -24.00 3.34 -184.38 -0.62 -24.61 16 11 C 0.38 14.74 4.97 39.02 0.19 14.93 16 12 C -0.37 -13.83 6.88 23.09 0.16 -13.67 16 13 H 0.12 4.28 7.01 -2.91 -0.02 4.26 16 14 C 0.05 1.60 4.79 85.55 0.41 2.01 16 15 N -0.72 -25.56 11.00 21.98 0.24 -25.32 16 16 Si 0.97 27.47 29.58 68.60 2.03 29.50 16 17 H -0.25 -7.19 7.11 99.48 0.71 -6.48 16 18 H -0.26 -7.10 7.11 99.48 0.71 -6.39 16 19 H -0.25 -7.13 7.11 99.48 0.71 -6.42 16 20 C -0.32 -13.30 5.88 -20.07 -0.12 -13.42 16 21 C 0.33 14.48 13.91 88.30 1.23 15.71 16 22 N -0.55 -25.19 18.55 19.03 0.35 -24.84 16 23 C 0.31 14.05 14.81 88.31 1.31 15.36 16 24 N -0.56 -26.19 18.55 19.02 0.35 -25.84 16 25 C 0.03 1.18 9.75 84.85 0.83 2.00 16 26 N -0.47 -16.16 9.38 -307.59 -2.89 -19.05 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 33 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 34 H 0.20 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.41 15.57 8.92 -92.70 -0.83 14.74 16 36 H 0.31 10.15 8.29 -92.71 -0.77 9.38 16 37 H 0.17 6.27 6.18 -2.91 -0.02 6.25 16 Total: -1.00 -52.96 347.26 3.89 -49.07 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.33 Total: 27.74 kcal Atomic # 6 Polarization: 44.12 SS G_CDS: 8.52 Total: 52.65 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -4.57 Total: -138.72 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -2.41 Total: -20.24 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: 2.03 Total: 29.50 kcal Total: -52.96 3.89 -49.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.564 kcal (2) G-P(sol) polarization free energy of solvation -52.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds