Wall clock time and date at job start Tue Mar 31 2020 10:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46915 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.46780 * 180.02562 * 7 6 5 9 9 C 1.36941 * 119.99738 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99895 * 359.97438 * 9 8 7 11 11 C 1.38806 * 119.99837 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00330 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99847 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47272 * 59.99656 * 13 11 9 15 15 H 1.48504 * 109.46969 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47094 * 299.99549 * 13 11 9 17 17 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 18 18 C 1.34769 * 119.99686 * 84.99974 * 17 2 1 19 19 O 1.21577 * 120.00365 * 0.02562 * 18 17 2 20 20 C 1.47527 * 119.99746 * 180.02562 * 18 17 2 21 21 C 1.36778 * 126.92959 * 179.71176 * 20 18 17 22 22 C 1.41410 * 103.83800 * 179.87545 * 21 20 18 23 23 Cl 1.73606 * 126.72201 * 180.11616 * 22 21 20 24 24 N 1.30222 * 106.54813 * 0.38748 * 22 21 20 25 25 O 1.20875 * 111.96144 * 359.75020 * 24 22 21 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 30 30 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 31 31 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 32 32 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 33 33 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 34 34 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 35 35 H 1.08993 * 109.47422 * 300.00302 * 7 6 5 36 36 H 1.09004 * 109.46754 * 60.00646 * 7 6 5 37 37 H 0.96997 * 120.00419 * 0.02562 * 8 7 6 38 38 H 0.97001 * 120.00306 * 180.02562 * 12 11 9 39 39 H 0.97000 * 119.99634 * 265.00306 * 17 2 1 40 40 H 1.08006 * 128.08279 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 6 5.5997 -1.2276 2.6269 8 7 6.0880 -1.9193 3.8225 9 6 7.4301 -1.9559 4.0921 10 1 8.1286 -1.4752 3.4231 11 6 7.8929 -2.6116 5.2246 12 7 7.0418 -3.1979 6.0396 13 14 9.7236 -2.6609 5.5928 14 1 10.2351 -1.2753 5.7463 15 1 9.9555 -3.4159 6.8504 16 1 10.4355 -3.3303 4.4746 17 7 2.0184 -0.6906 -1.1962 18 6 2.1472 -0.0183 -2.3570 19 8 1.8584 1.1615 -2.4116 20 6 2.6384 -0.7138 -3.5617 21 6 2.8173 -0.1752 -4.8062 22 6 3.3014 -1.2576 -5.5768 23 17 3.7295 -1.2247 -7.2589 24 7 3.3576 -2.2852 -4.7789 25 8 2.9957 -2.0084 -3.6593 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4261 32 1 3.8531 0.4370 1.3574 33 1 3.6402 -0.8760 3.4506 34 1 3.7864 -2.3853 2.5186 35 1 6.0340 -1.6870 1.7390 36 1 5.8884 -0.1775 2.6708 37 1 5.4608 -2.3514 4.4231 38 1 7.3651 -3.6558 6.8312 39 1 2.2491 -1.6318 -1.1525 40 1 2.6335 0.8401 -5.1253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176303814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:44 Heat of formation + Delta-G solvation = 15.861079 kcal Electronic energy + Delta-G solvation = -22887.834167 eV Core-core repulsion = 19152.940520 eV Total energy + Delta-G solvation = -3734.893647 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.71288 -40.28792 -37.65552 -37.22097 -35.37248 -34.28462 -33.47914 -32.75530 -31.39833 -30.27983 -27.50151 -25.20159 -24.17948 -24.10816 -22.30573 -21.49984 -20.96328 -20.69506 -19.35659 -18.49369 -17.02560 -16.89301 -16.75643 -15.69677 -15.38107 -15.17475 -14.71853 -14.48493 -14.33828 -14.00726 -13.61450 -13.27321 -13.18205 -13.03123 -13.00501 -12.92742 -12.49419 -11.83093 -11.62550 -11.56316 -11.33497 -11.05709 -10.82635 -10.75399 -10.72814 -10.62439 -10.46482 -10.36587 -10.32312 -10.01864 -9.68270 -9.51260 -8.84552 -6.89610 -5.74485 -3.02928 0.17952 0.89755 1.24902 1.99360 2.48575 2.72573 3.45605 3.49521 3.50873 3.65105 4.13132 4.29732 4.40622 4.48453 4.63695 4.76393 4.88142 5.08977 5.17416 5.28608 5.35864 5.49337 5.56230 5.62037 5.69689 5.80548 5.87155 6.01412 6.03343 6.26647 6.27936 6.37529 6.45127 6.85023 6.89412 6.93242 7.30450 7.53540 7.71361 8.45016 9.55638 10.14768 10.49254 11.48553 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.002298 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.631921 B =12179.614239 C =13912.797812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.703 5.703 18 C 0.607 3.393 19 O -0.507 6.507 20 C -0.069 4.069 21 C -0.136 4.136 22 C 0.050 3.950 23 Cl 0.034 6.966 24 N -0.323 5.323 25 O 0.141 5.859 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.409 0.591 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 6.026 -23.101 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.354 5.354 18 C 0.390 3.610 19 O -0.383 6.383 20 C -0.135 4.135 21 C -0.159 4.159 22 C -0.133 4.133 23 Cl 0.062 6.938 24 N -0.023 5.023 25 O 0.062 5.938 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.245 0.755 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.585 5.647 -23.466 28.731 hybrid contribution 0.914 0.031 0.050 0.916 sum -14.672 5.678 -23.416 28.210 Atomic orbital electron populations 1.22197 0.94768 1.02505 1.02851 1.21232 0.94141 0.97856 0.83119 0.88689 1.21968 0.97015 1.01169 0.96441 1.21550 0.93822 1.01233 0.98846 1.21722 0.97287 1.00322 0.97019 1.20652 0.90994 0.95322 0.90598 1.42381 1.05326 1.64921 1.25266 1.19206 0.83927 1.28413 1.05502 0.91298 1.24748 0.97735 1.00942 0.97729 1.69649 1.32866 1.40698 1.15182 0.86255 0.85115 0.77477 0.77276 1.21272 1.21662 1.21270 1.46049 1.65519 1.14672 1.09149 1.16401 0.78167 0.85633 0.80842 1.90900 1.49935 1.13892 1.83545 1.24283 1.06088 0.85135 0.97992 1.22753 1.01207 1.01653 0.90315 1.24089 1.06027 0.91523 0.91690 1.98437 1.91371 1.98183 1.05796 1.73892 1.14795 1.22616 0.90951 1.85082 1.59591 1.25291 1.23800 0.92121 0.92146 0.91017 0.89747 0.90998 0.92082 0.91841 0.91990 0.92040 0.96620 0.96584 0.78339 0.93487 0.75484 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 2 C 0.14 1.10 2.57 -67.93 -0.17 0.93 16 3 H 0.10 0.87 7.58 -51.93 -0.39 0.48 16 4 C -0.13 -1.06 4.75 -26.73 -0.13 -1.19 16 5 C -0.12 -1.30 5.10 -26.73 -0.14 -1.44 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.05 16 7 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -19.07 5.60 -59.90 -0.34 -19.40 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.64 13.06 55.49 0.72 -27.91 16 13 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 N -0.70 -5.41 4.53 -54.85 -0.25 -5.66 16 18 C 0.61 5.65 7.78 -12.48 -0.10 5.55 16 19 O -0.51 -6.08 16.57 5.30 0.09 -5.99 16 20 C -0.07 -0.59 7.29 -36.32 -0.26 -0.86 16 21 C -0.14 -1.09 10.96 -38.90 -0.43 -1.52 16 22 C 0.05 0.44 7.97 -17.03 -0.14 0.31 16 23 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 24 N -0.32 -3.32 12.05 32.82 0.40 -2.92 16 25 O 0.14 1.28 11.04 15.54 0.17 1.45 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.41 2.52 8.43 -40.82 -0.34 2.18 16 40 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -32.92 363.09 -7.35 -40.27 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.65 Total: 3.86 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.42 Total: -5.57 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.54 Total: -55.89 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.26 Total: -4.54 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.92 -7.35 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176303814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.133 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds