Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35666 * 117.00157 * 2 1 4 4 C 1.38834 * 119.97124 * 0.23918 * 3 2 1 5 5 C 1.37746 * 120.21287 * 180.27788 * 4 3 2 6 6 C 1.39813 * 120.16149 * 359.73932 * 5 4 3 7 7 C 1.47629 * 120.02552 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00302 * 359.97176 * 7 6 5 9 9 O 1.21586 * 119.99770 * 179.97438 * 7 6 5 10 10 C 1.39505 * 119.94686 * 359.97438 * 6 5 4 11 11 C 1.38891 * 119.78458 * 0.02562 * 10 6 5 12 12 C 1.48346 * 120.08386 * 179.97438 * 11 10 6 13 13 C 1.38685 * 120.01307 * 64.99801 * 12 11 10 14 14 C 1.40543 * 119.65350 * 180.02562 * 13 12 11 15 15 C 1.41346 * 120.15429 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00076 * 204.53105 * 15 14 13 17 17 C 1.39895 * 119.99992 * 24.52432 * 15 14 13 18 18 N 1.30870 * 120.00090 * 17.93614 * 17 15 14 19 19 Si 1.86797 * 120.00142 * 197.94161 * 17 15 14 20 20 H 1.48505 * 109.47591 * 89.99814 * 19 17 15 21 21 H 1.48499 * 109.47315 * 209.99976 * 19 17 15 22 22 H 1.48501 * 109.46923 * 329.99670 * 19 17 15 23 23 C 1.40849 * 119.69258 * 0.02562 * 14 13 12 24 24 C 1.37563 * 120.02299 * 359.97438 * 23 14 13 25 25 C 1.38749 * 120.34817 * 0.27726 * 24 23 14 26 26 F 1.35102 * 119.84204 * 179.72034 * 25 24 23 27 27 H 1.08994 * 109.46554 * 299.99870 * 1 2 3 28 28 H 1.09001 * 109.47268 * 59.99714 * 1 2 3 29 29 H 1.08998 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.89356 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.91844 * 179.72195 * 5 4 3 32 32 H 0.97003 * 119.99935 * 0.02562 * 8 7 6 33 33 H 0.96998 * 120.00552 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.11199 * 180.02562 * 10 6 5 35 35 H 1.08001 * 120.16858 * 0.05286 * 13 12 11 36 36 H 0.96996 * 119.99935 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.98677 * 180.02562 * 23 14 13 38 38 H 1.07997 * 119.82665 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2883 2.3728 0.0050 5 6 1.9085 3.6027 -0.0007 6 6 3.3041 3.6857 -0.0062 7 6 3.9656 5.0054 -0.0117 8 7 3.2243 6.1309 -0.0122 9 8 5.1794 5.0770 -0.0160 10 6 4.0710 2.5204 -0.0052 11 6 3.4434 1.2814 0.0006 12 6 4.2524 0.0379 0.0011 13 6 5.0602 -0.2637 1.0873 14 6 5.8240 -1.4435 1.0795 15 6 6.6505 -1.7615 2.1811 16 1 7.5063 -2.4062 2.0458 17 6 6.3599 -1.2411 3.4468 18 7 5.1678 -0.7644 3.7004 19 14 7.6736 -1.2266 4.7747 20 1 8.4379 0.0445 4.7012 21 1 7.0306 -1.3410 6.1084 22 1 8.5966 -2.3718 4.5704 23 6 5.7620 -2.3074 -0.0312 24 6 4.9563 -1.9955 -1.1017 25 6 4.2057 -0.8285 -1.0977 26 9 3.4223 -0.5295 -2.1569 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2100 2.3137 0.0093 31 1 1.3151 4.5052 -0.0013 32 1 2.2559 6.0738 -0.0085 33 1 3.6589 6.9980 -0.0162 34 1 5.1493 2.5813 -0.0090 35 1 5.1018 0.4044 1.9348 36 1 4.9663 -0.4039 4.5781 37 1 6.3465 -3.2155 -0.0420 38 1 4.9115 -2.6600 -1.9518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205226150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = -102.791027 kcal Electronic energy + Delta-G solvation = -25699.096771 eV Core-core repulsion = 21805.737776 eV Total energy + Delta-G solvation = -3893.358995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.26406 -41.48884 -40.31561 -39.20835 -37.92781 -35.56651 -34.89984 -33.44229 -31.41609 -31.23397 -29.94386 -28.20799 -26.97104 -24.72207 -24.29203 -22.90336 -22.24945 -21.23915 -19.64809 -18.84504 -18.60216 -18.01180 -17.89989 -17.20571 -16.84455 -16.68710 -16.29984 -16.08504 -15.93844 -15.77640 -15.28885 -15.22862 -14.67908 -14.62005 -14.19459 -13.88282 -13.81400 -13.66844 -13.43793 -13.09908 -12.85495 -12.80441 -12.55515 -12.19616 -12.04937 -11.99773 -11.73093 -11.36814 -11.19008 -11.03208 -10.72720 -10.12195 -9.53683 -9.29683 -9.01425 -8.68219 -6.36497 -0.14011 0.17123 0.79091 0.91794 1.37918 1.48097 1.51387 1.80872 2.18867 2.34418 2.53290 2.61759 2.80457 3.55952 3.60406 3.81316 3.93616 3.95554 4.10215 4.17495 4.30719 4.38321 4.41882 4.51739 4.70280 4.75950 4.93712 5.00216 5.05849 5.12992 5.16048 5.23512 5.29264 5.52178 5.64385 5.75757 5.88019 5.89507 6.00982 6.24061 6.42135 6.45732 6.57528 6.85683 6.90367 7.31683 8.28196 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.005254 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.079034 B = 5328.062001 C = 6617.895911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.162 3.838 4 C -0.211 4.211 5 C -0.027 4.027 6 C -0.195 4.195 7 C 0.568 3.432 8 N -0.823 5.823 9 O -0.596 6.596 10 C -0.028 4.028 11 C -0.099 4.099 12 C -0.057 4.057 13 C -0.146 4.146 14 C 0.075 3.925 15 C -0.489 4.489 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.819 5.819 19 Si 0.981 3.019 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.253 1.253 23 C -0.212 4.212 24 C -0.119 4.119 25 C -0.032 4.032 26 F -0.164 7.164 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.177 0.823 31 H 0.184 0.816 32 H 0.419 0.581 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.289 0.711 37 H 0.118 0.882 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.926 10.087 -3.320 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.115 3.885 4 C -0.229 4.229 5 C -0.045 4.045 6 C -0.198 4.198 7 C 0.355 3.645 8 N -0.388 5.388 9 O -0.478 6.478 10 C -0.048 4.048 11 C -0.100 4.100 12 C -0.058 4.058 13 C -0.166 4.166 14 C 0.072 3.928 15 C -0.518 4.518 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.444 5.444 19 Si 0.802 3.198 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.176 1.176 23 C -0.231 4.231 24 C -0.138 4.138 25 C -0.052 4.052 26 F -0.143 7.143 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.195 0.805 31 H 0.201 0.799 32 H 0.252 0.748 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.309 9.861 -3.174 16.088 hybrid contribution 0.240 0.041 0.433 0.497 sum -12.069 9.903 -2.741 15.850 Atomic orbital electron populations 1.23459 0.76019 1.05564 1.02974 1.86183 1.23925 1.26996 1.86998 1.19517 0.90925 0.85921 0.92162 1.21484 1.01816 0.90500 1.09115 1.21467 0.91597 0.98951 0.92503 1.19700 0.95026 0.92171 1.12906 1.18202 0.86080 0.85479 0.74693 1.43410 1.11642 1.07421 1.76365 1.90806 1.16132 1.88246 1.52588 1.21029 0.99681 0.90419 0.93622 1.18202 0.91117 0.92911 1.07756 1.18476 0.99003 0.94125 0.94213 1.21190 1.00568 0.98084 0.96754 1.17943 0.91416 0.90402 0.93021 1.19844 1.11201 1.27820 0.92896 0.89708 1.26790 0.97434 0.91862 1.01936 1.69893 1.20933 1.29408 1.24206 0.85206 0.78314 0.79970 0.76318 1.19128 1.19101 1.17639 1.21075 1.05137 1.00831 0.96066 1.20730 0.97896 0.95594 0.99573 1.17386 1.01809 0.99434 0.86574 1.91267 1.73944 1.93829 1.55305 0.90675 0.90401 0.87311 0.80539 0.79886 0.74841 0.75364 0.87116 0.87370 0.90039 0.86381 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -12.02 9.65 -89.83 -0.87 -12.88 16 3 C 0.16 5.87 6.49 22.85 0.15 6.02 16 4 C -0.21 -5.17 9.01 22.30 0.20 -4.96 16 5 C -0.03 -0.58 9.52 22.53 0.21 -0.37 16 6 C -0.19 -6.06 5.87 -20.11 -0.12 -6.17 16 7 C 0.57 16.78 8.04 86.72 0.70 17.48 16 8 N -0.82 -13.08 8.82 -175.75 -1.55 -14.63 16 9 O -0.60 -23.89 17.17 -3.99 -0.07 -23.96 16 10 C -0.03 -1.16 9.26 22.73 0.21 -0.95 16 11 C -0.10 -4.35 5.00 -19.99 -0.10 -4.45 16 12 C -0.06 -2.91 4.93 -20.05 -0.10 -3.01 16 13 C -0.15 -8.10 8.36 22.94 0.19 -7.91 16 14 C 0.07 4.12 5.57 -21.31 -0.12 4.00 16 15 C -0.49 -26.41 9.04 23.44 0.21 -26.20 16 16 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 17 C 0.04 1.80 5.13 85.24 0.44 2.24 16 18 N -0.82 -43.48 10.96 21.82 0.24 -43.24 16 19 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 23 C -0.21 -10.58 9.78 22.75 0.22 -10.35 16 24 C -0.12 -5.63 9.99 22.23 0.22 -5.40 16 25 C -0.03 -1.60 6.97 22.82 0.16 -1.44 16 26 F -0.16 -7.71 16.62 44.97 0.75 -6.97 16 27 H 0.07 1.30 7.64 -2.39 -0.02 1.28 16 28 H 0.08 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.18 2.69 6.27 -2.91 -0.02 2.67 16 31 H 0.18 1.68 6.38 -2.91 -0.02 1.66 16 32 H 0.42 3.19 6.84 -92.71 -0.63 2.55 16 33 H 0.41 5.31 8.93 -92.71 -0.83 4.48 16 34 H 0.11 5.10 7.64 -2.91 -0.02 5.07 16 35 H 0.11 6.31 6.16 -2.91 -0.02 6.29 16 36 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 37 H 0.12 5.36 8.06 -2.91 -0.02 5.33 16 38 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -77.27 334.90 3.81 -73.47 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.31 Total: 27.61 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.59 Total: -40.08 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -1.31 Total: -57.87 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.94 Total: -36.84 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.75 Total: -6.97 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -77.27 3.81 -73.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205226150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.326 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds