Wall clock time and date at job start Tue Mar 31 2020 11:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00310 * 2 1 4 4 C 1.46999 * 119.99908 * 179.97438 * 2 1 3 5 5 C 1.39891 * 120.15916 * 0.02562 * 4 2 1 6 6 C 1.38455 * 119.76797 * 179.97438 * 5 4 2 7 7 N 1.39839 * 119.95116 * 179.97438 * 6 5 4 8 8 C 1.39786 * 120.00103 * 175.25931 * 7 6 5 9 9 C 1.38777 * 120.10731 * 254.86728 * 8 7 6 10 10 C 1.38180 * 119.99460 * 180.27177 * 9 8 7 11 11 C 1.38358 * 120.20246 * 359.74468 * 10 9 8 12 12 C 1.38181 * 120.21472 * 359.97438 * 11 10 9 13 13 C 1.38716 * 120.00613 * 359.97438 * 12 11 10 14 14 O 1.35784 * 120.10482 * 180.02562 * 13 12 11 15 15 C 1.34804 * 117.00125 * 5.65263 * 14 13 12 16 16 H 1.07997 * 119.99470 * 354.93357 * 15 14 13 17 17 C 1.38622 * 120.00287 * 174.92888 * 15 14 13 18 18 N 1.31576 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00012 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47211 * 59.99615 * 19 17 15 21 21 H 1.48495 * 109.46979 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46661 * 299.99807 * 19 17 15 23 23 C 1.39145 * 120.09596 * 0.26411 * 6 5 4 24 24 C 1.38133 * 120.32302 * 359.45969 * 23 6 5 25 25 C 1.38287 * 120.22639 * 0.54208 * 24 23 6 26 26 F 1.35109 * 120.04647 * 179.70647 * 25 24 23 27 27 H 1.08997 * 109.46769 * 240.00496 * 1 2 3 28 28 H 1.09005 * 109.46753 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47188 * 120.00141 * 1 2 3 30 30 H 1.07998 * 120.11229 * 359.97438 * 5 4 2 31 31 H 0.97006 * 120.00275 * 355.25871 * 7 6 5 32 32 H 1.08005 * 120.00772 * 0.02562 * 9 8 7 33 33 H 1.07990 * 119.90197 * 179.77000 * 10 9 8 34 34 H 1.07991 * 119.89523 * 180.02562 * 11 10 9 35 35 H 1.07998 * 119.99983 * 179.97438 * 12 11 10 36 36 H 0.97002 * 120.00137 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.84327 * 179.72925 * 23 6 5 38 38 H 1.08000 * 119.88387 * 180.27741 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2420 -1.2731 0.0006 5 6 1.5459 -2.4865 0.0006 6 6 2.2463 -3.6808 0.0006 7 7 1.5543 -4.8960 0.0011 8 6 2.2568 -6.1004 -0.0989 9 6 2.2530 -6.8116 -1.2906 10 6 2.9435 -8.0047 -1.3852 11 6 3.6445 -8.4914 -0.2962 12 6 3.6589 -7.7873 0.8927 13 6 2.9696 -6.5881 0.9971 14 8 2.9828 -5.8943 2.1642 15 6 3.7784 -6.3634 3.1461 16 1 4.3049 -7.2972 3.0146 17 6 3.9209 -5.6473 4.3245 18 7 3.2792 -4.5099 4.4848 19 14 5.0241 -6.2971 5.6848 20 1 6.4126 -6.4295 5.1753 21 1 5.0047 -5.3532 6.8310 22 1 4.5312 -7.6254 6.1296 23 6 3.6377 -3.6737 0.0061 24 6 4.3290 -2.4778 0.0004 25 6 3.6430 -1.2771 0.0004 26 9 4.3228 -0.1095 0.0008 27 1 -0.3633 -0.5137 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 0.4659 -2.4916 0.0006 31 1 0.5868 -4.9032 0.0709 32 1 1.7070 -6.4346 -2.1428 33 1 2.9365 -8.5588 -2.3121 34 1 4.1828 -9.4242 -0.3757 35 1 4.2069 -8.1707 1.7407 36 1 3.3792 -4.0086 5.3092 37 1 4.1800 -4.6077 0.0105 38 1 5.4090 -2.4805 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:35 Heat of formation + Delta-G solvation = -47.441198 kcal Electronic energy + Delta-G solvation = -25608.979431 eV Core-core repulsion = 21718.020585 eV Total energy + Delta-G solvation = -3890.958846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.32907 -39.88347 -39.21608 -38.00802 -36.57794 -34.63047 -32.39029 -31.85724 -30.07221 -29.22669 -28.95910 -27.20218 -25.45207 -23.87911 -22.12389 -21.78523 -21.24086 -19.51705 -18.10022 -17.50039 -17.38683 -16.85382 -16.22461 -15.37373 -15.34763 -15.12279 -14.80034 -14.69775 -14.46602 -14.28031 -13.97488 -13.76813 -13.56751 -13.37539 -12.89595 -12.51232 -12.42692 -12.30515 -12.14096 -12.05176 -11.79770 -11.45704 -11.13515 -11.04169 -11.00180 -10.95797 -10.58014 -9.80695 -9.55823 -9.47774 -8.95162 -8.77884 -8.30260 -7.44434 -6.95708 -6.55329 -4.14915 0.89634 1.69182 1.92054 2.18534 2.67482 3.06277 3.07737 3.10913 3.78783 3.87137 4.08154 4.19725 4.35628 4.67364 4.95739 4.99013 5.06578 5.15132 5.35788 5.42673 5.50936 5.54181 5.60649 5.63468 5.76375 5.90712 5.94155 6.10759 6.14835 6.37628 6.43794 6.51582 6.56452 6.61903 6.90122 6.95421 7.08461 7.17675 7.21685 7.49934 7.67008 7.84480 7.91296 8.16810 8.88904 9.54655 10.60184 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.005136 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.313355 B = 5450.067164 C = 7096.643643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.455 6.455 4 C -0.169 4.169 5 C -0.128 4.128 6 C 0.215 3.785 7 N -0.674 5.674 8 C 0.047 3.953 9 C -0.072 4.072 10 C -0.211 4.211 11 C -0.069 4.069 12 C -0.232 4.232 13 C 0.146 3.854 14 O -0.156 6.156 15 C -0.398 4.398 16 H 0.091 0.909 17 C 0.045 3.955 18 N -0.850 5.850 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.098 4.098 24 C -0.122 4.122 25 C 0.092 3.908 26 F -0.132 7.132 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.272 0.728 37 H 0.134 0.866 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -0.570 -9.181 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.274 3.726 3 O -0.331 6.331 4 C -0.172 4.172 5 C -0.151 4.151 6 C 0.112 3.888 7 N -0.299 5.299 8 C -0.046 4.046 9 C -0.092 4.092 10 C -0.231 4.231 11 C -0.087 4.087 12 C -0.252 4.252 13 C 0.089 3.911 14 O -0.058 6.058 15 C -0.474 4.474 16 H 0.109 0.891 17 C -0.161 4.161 18 N -0.483 5.483 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.120 4.120 24 C -0.141 4.141 25 C 0.071 3.929 26 F -0.110 7.110 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.152 0.848 31 H 0.237 0.763 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.652 0.307 -8.897 9.623 hybrid contribution 0.366 -0.537 0.946 1.148 sum -3.287 -0.230 -7.951 8.606 Atomic orbital electron populations 1.22214 0.93719 1.04749 1.04632 1.22332 0.91679 0.87328 0.71300 1.90565 1.72186 1.34100 1.36234 1.20110 0.92295 0.95276 1.09512 1.20530 0.99422 0.89308 1.05855 1.17686 0.91442 0.85767 0.93873 1.41418 1.07400 1.00589 1.80454 1.16568 1.05884 0.89974 0.92206 1.20861 0.98350 0.94964 0.94983 1.20489 1.05073 0.98531 0.98974 1.20842 0.96937 0.98209 0.92711 1.21126 1.07292 0.97319 0.99436 1.19744 0.93760 0.90774 0.86854 1.84030 1.57021 1.47396 1.17336 1.21276 1.25230 1.07316 0.93590 0.89135 1.25261 0.97579 0.95347 0.97901 1.70031 1.38881 1.12735 1.26622 0.85828 0.79786 0.78663 0.79496 1.19415 1.20211 1.19490 1.20784 0.92529 0.98201 1.00516 1.20829 1.00599 0.90480 1.02232 1.17604 0.88866 0.81522 1.04912 1.91499 1.79602 1.46173 1.93759 0.88666 0.89979 0.88925 0.84787 0.76280 0.86722 0.87267 0.87270 0.85258 0.91827 0.84782 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 8.93 36.01 0.32 -1.74 16 2 C 0.40 6.16 7.22 -30.76 -0.22 5.94 16 3 O -0.46 -8.61 16.07 5.56 0.09 -8.52 16 4 C -0.17 -2.85 5.87 -105.03 -0.62 -3.47 16 5 C -0.13 -1.96 9.31 -38.88 -0.36 -2.33 16 6 C 0.21 3.76 6.49 -83.79 -0.54 3.22 16 7 N -0.67 -11.31 5.18 -8.31 -0.04 -11.35 16 8 C 0.05 0.87 4.89 -83.55 -0.41 0.46 16 9 C -0.07 -1.13 9.96 -39.40 -0.39 -1.52 16 10 C -0.21 -3.20 10.04 -39.56 -0.40 -3.59 16 11 C -0.07 -1.11 10.04 -39.56 -0.40 -1.51 16 12 C -0.23 -4.51 9.16 -39.43 -0.36 -4.88 16 13 C 0.15 3.12 5.47 -38.92 -0.21 2.90 16 14 O -0.16 -3.99 9.18 0.02 0.00 -3.99 16 15 C -0.40 -10.30 9.49 30.87 0.29 -10.00 16 16 H 0.09 2.17 5.21 -52.49 -0.27 1.90 16 17 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 18 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 19 Si 0.94 19.69 29.55 -169.99 -5.02 14.67 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.10 -1.84 8.93 -39.28 -0.35 -2.19 16 24 C -0.12 -2.19 10.00 -39.60 -0.40 -2.58 16 25 C 0.09 1.71 7.29 -38.87 -0.28 1.43 16 26 F -0.13 -2.58 15.54 2.25 0.03 -2.54 16 27 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.13 1.57 7.05 -52.49 -0.37 1.20 16 31 H 0.40 5.71 8.84 -40.82 -0.36 5.35 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 2.55 5.64 -52.49 -0.30 2.25 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.13 2.66 6.27 -52.49 -0.33 2.33 16 38 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -30.85 336.94 -7.25 -38.10 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.72 Total: 10.25 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.43 Total: -18.78 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.72 Total: -34.26 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.03 Total: -2.54 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.85 -7.25 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.343 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds