Wall clock time and date at job start Tue Mar 31 2020 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21334 * 119.99813 * 2 1 4 4 C 1.46477 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.40322 * 120.26424 * 266.03656 * 4 2 1 6 6 F 1.35099 * 120.09022 * 0.02562 * 5 4 2 7 7 C 1.38002 * 119.82060 * 180.27833 * 5 4 2 8 8 C 1.38551 * 120.36880 * 359.72309 * 7 5 4 9 9 C 1.38023 * 120.54467 * 0.02562 * 8 7 5 10 10 C 1.38886 * 120.16434 * 359.97438 * 9 8 7 11 11 N 1.38724 * 120.18970 * 180.02562 * 10 9 8 12 12 C 1.39790 * 120.00293 * 255.41055 * 11 10 9 13 13 C 1.38776 * 120.10619 * 4.58755 * 12 11 10 14 14 C 1.38176 * 119.99270 * 180.02562 * 13 12 11 15 15 C 1.38355 * 120.20730 * 359.97438 * 14 13 12 16 16 C 1.38177 * 120.21176 * 359.72759 * 15 14 13 17 17 C 1.38726 * 120.00505 * 0.54933 * 16 15 14 18 18 O 1.35783 * 120.10454 * 179.71896 * 17 16 15 19 19 C 1.34803 * 116.99793 * 354.04784 * 18 17 16 20 20 H 1.08005 * 119.99987 * 355.82433 * 19 18 17 21 21 C 1.38627 * 119.99897 * 175.55205 * 19 18 17 22 22 N 1.31579 * 120.00284 * 0.27600 * 21 19 18 23 23 Si 1.86801 * 119.99885 * 180.27269 * 21 19 18 24 24 H 1.48501 * 109.47103 * 90.00511 * 23 21 19 25 25 H 1.48506 * 109.47125 * 209.99994 * 23 21 19 26 26 H 1.48500 * 109.47314 * 329.99776 * 23 21 19 27 27 H 1.08999 * 109.46883 * 274.91845 * 1 2 3 28 28 H 1.09003 * 109.46964 * 34.92174 * 1 2 3 29 29 H 1.08999 * 109.46973 * 154.92260 * 1 2 3 30 30 H 1.08002 * 119.81292 * 179.74830 * 7 5 4 31 31 H 1.07999 * 119.73070 * 179.97438 * 8 7 5 32 32 H 1.07997 * 119.91974 * 179.97438 * 9 8 7 33 33 H 0.96997 * 119.99401 * 75.41917 * 11 10 9 34 34 H 1.08000 * 120.00286 * 0.03720 * 13 12 11 35 35 H 1.07996 * 119.90183 * 179.97438 * 14 13 12 36 36 H 1.08002 * 119.89548 * 179.97438 * 15 14 13 37 37 H 1.07998 * 119.99788 * 180.29882 * 16 15 14 38 38 H 0.96997 * 120.00260 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2394 -1.2685 0.0006 5 6 2.6656 -1.8385 1.2099 6 9 2.4013 -1.2190 2.3810 7 6 3.3600 -3.0311 1.1994 8 6 3.6338 -3.6717 0.0018 9 6 3.2172 -3.1272 -1.1962 10 6 2.5168 -1.9280 -1.2117 11 7 2.0975 -1.3805 -2.4153 12 6 2.7713 -0.2815 -2.9559 13 6 3.9165 0.2043 -2.3407 14 6 4.5805 1.2911 -2.8767 15 6 4.1077 1.8977 -4.0268 16 6 2.9718 1.4172 -4.6498 17 6 2.2950 0.3302 -4.1160 18 8 1.1753 -0.1401 -4.7234 19 6 0.7036 0.5672 -5.7695 20 1 1.1732 1.4994 -6.0468 21 6 -0.3806 0.0951 -6.4929 22 7 -0.9528 -1.0406 -6.1551 23 14 -1.0295 1.0714 -7.9473 24 1 -0.3320 0.6385 -9.1848 25 1 -2.4882 0.8332 -8.0922 26 1 -0.7844 2.5184 -7.7211 27 1 -0.3633 0.0881 1.0239 28 1 -0.3633 0.8426 -0.5883 29 1 -0.3633 -0.9308 -0.4356 30 1 3.6915 -3.4676 2.1300 31 1 4.1783 -4.6043 0.0055 32 1 3.4365 -3.6349 -2.1238 33 1 1.3365 -1.7603 -2.8818 34 1 4.2888 -0.2671 -1.4432 35 1 5.4713 1.6682 -2.3965 36 1 4.6304 2.7471 -4.4412 37 1 2.6085 1.8904 -5.5500 38 1 -1.7117 -1.3708 -6.6610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:42 Heat of formation + Delta-G solvation = -60.877932 kcal Electronic energy + Delta-G solvation = -25970.386121 eV Core-core repulsion = 22078.844615 eV Total energy + Delta-G solvation = -3891.541506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08313 -41.55561 -40.53326 -39.39809 -38.11636 -36.22784 -34.22020 -32.77471 -31.44508 -30.72797 -30.48998 -28.91797 -27.28578 -24.94261 -24.08028 -23.01046 -22.46906 -21.13312 -19.78528 -19.20037 -18.86502 -17.88605 -17.73575 -17.41034 -16.85465 -16.77306 -16.27312 -16.09172 -15.77626 -15.70186 -15.54309 -15.45726 -15.20316 -14.87782 -14.56117 -14.21325 -13.55250 -13.51709 -13.34066 -13.21351 -13.08399 -12.98374 -12.78653 -12.61661 -12.50580 -12.25875 -12.10007 -11.42535 -11.28917 -10.90210 -10.75168 -10.00578 -9.80181 -9.29616 -8.42562 -8.25280 -6.04723 -0.13748 0.02555 0.63183 0.72579 0.80554 1.36763 1.44244 1.51906 2.17797 2.30006 2.44919 2.87512 2.88920 3.15454 3.24003 3.43453 3.82584 3.93237 4.01847 4.10350 4.22327 4.29215 4.31014 4.42026 4.44702 4.58525 4.60857 4.76856 4.95531 4.97196 5.01464 5.10705 5.12009 5.21635 5.30223 5.43339 5.62195 5.70690 5.81607 6.01427 6.10900 6.27101 6.49153 6.72441 7.03821 7.82364 8.79807 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.004264 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.518845 B = 6565.510240 C = 6945.593896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.406 3.594 3 O -0.473 6.473 4 C -0.216 4.216 5 C 0.119 3.881 6 F -0.141 7.141 7 C -0.145 4.145 8 C -0.049 4.049 9 C -0.137 4.137 10 C 0.205 3.795 11 N -0.705 5.705 12 C 0.136 3.864 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.119 4.119 16 C -0.214 4.214 17 C 0.066 3.934 18 O -0.222 6.222 19 C -0.404 4.404 20 H 0.093 0.907 21 C -0.016 4.016 22 N -0.915 5.915 23 Si 1.009 2.991 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.259 1.259 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.146 0.854 33 H 0.412 0.588 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.682 -5.605 12.890 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.283 3.717 3 O -0.347 6.347 4 C -0.220 4.220 5 C 0.099 3.901 6 F -0.119 7.119 7 C -0.163 4.163 8 C -0.067 4.067 9 C -0.157 4.157 10 C 0.110 3.890 11 N -0.337 5.337 12 C 0.038 3.962 13 C -0.159 4.159 14 C -0.171 4.171 15 C -0.138 4.138 16 C -0.234 4.234 17 C 0.014 3.986 18 O -0.130 6.130 19 C -0.481 4.481 20 H 0.110 0.890 21 C -0.214 4.214 22 N -0.554 5.554 23 Si 0.830 3.170 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.183 1.183 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.163 0.837 33 H 0.250 0.750 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.763 -5.335 13.019 16.070 hybrid contribution -1.047 0.604 -0.909 1.512 sum 6.717 -4.731 12.110 14.634 Atomic orbital electron populations 1.22236 0.91753 1.05241 1.05746 1.22644 0.93041 0.87364 0.68698 1.90573 1.72955 1.35188 1.36003 1.20990 1.06836 0.99947 0.94194 1.17694 1.00001 0.93497 0.78879 1.91498 1.92259 1.82666 1.45512 1.21458 0.99746 0.93200 1.01941 1.21450 0.95878 1.00080 0.89282 1.21793 0.97506 0.95500 1.00873 1.17321 0.95485 0.92949 0.83198 1.41417 1.36317 1.33756 1.22204 1.17144 0.94816 0.91376 0.92830 1.20401 0.94984 0.99875 1.00651 1.20866 1.01614 0.97147 0.97455 1.20956 0.95921 1.00626 0.96313 1.21133 0.99269 0.99912 1.03056 1.19323 0.89701 0.95690 0.93865 1.83823 1.35999 1.49467 1.43671 1.21638 1.14373 1.04794 1.07278 0.88991 1.26310 0.96052 0.97698 1.01342 1.70139 1.22834 1.21182 1.41199 0.84707 0.77674 0.78107 0.76533 1.19034 1.19691 1.18334 0.85871 0.90338 0.88945 0.80691 0.80012 0.83668 0.75005 0.86247 0.84198 0.84282 0.86113 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.63 10.25 71.24 0.73 -4.90 16 2 C 0.41 14.11 5.20 27.84 0.14 14.26 16 3 O -0.47 -19.60 17.13 -3.20 -0.05 -19.65 16 4 C -0.22 -6.51 4.97 -20.01 -0.10 -6.61 16 5 C 0.12 2.94 7.29 22.72 0.17 3.10 16 6 F -0.14 -3.66 16.84 44.97 0.76 -2.90 16 7 C -0.14 -2.41 10.00 22.29 0.22 -2.18 16 8 C -0.05 -0.74 10.02 22.29 0.22 -0.51 16 9 C -0.14 -3.09 9.95 22.37 0.22 -2.87 16 10 C 0.20 6.22 4.60 38.82 0.18 6.40 16 11 N -0.71 -26.85 4.89 -179.48 -0.88 -27.73 16 12 C 0.14 5.87 6.13 38.31 0.23 6.11 16 13 C -0.14 -5.31 8.28 22.38 0.19 -5.12 16 14 C -0.15 -5.50 10.04 22.28 0.22 -5.28 16 15 C -0.12 -4.50 10.04 22.28 0.22 -4.28 16 16 C -0.21 -9.72 9.13 22.37 0.20 -9.52 16 17 C 0.07 3.28 6.67 22.70 0.15 3.44 16 18 O -0.22 -12.70 9.01 -22.84 -0.21 -12.90 16 19 C -0.40 -23.06 9.45 67.91 0.64 -22.41 16 20 H 0.09 4.96 5.28 -2.91 -0.02 4.94 16 21 C -0.02 -0.90 5.49 84.82 0.47 -0.44 16 22 N -0.91 -53.71 13.67 21.61 0.30 -53.42 16 23 Si 1.01 42.58 29.55 68.60 2.03 44.61 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 30 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.41 17.00 8.20 -92.71 -0.76 16.24 16 34 H 0.12 4.34 6.71 -2.91 -0.02 4.32 16 35 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 5.54 5.70 -2.91 -0.02 5.52 16 38 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -72.31 338.77 6.42 -65.89 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.36 Total: 36.93 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.12 Total: -30.83 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -0.58 Total: -81.15 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.26 Total: -32.56 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.76 Total: -2.90 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -72.31 6.42 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.012 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds