Wall clock time and date at job start Tue Mar 31 2020 11:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34788 * 116.99753 * 2 1 4 4 O 1.21544 * 119.99928 * 359.97438 * 3 2 1 5 5 C 1.47144 * 120.00177 * 179.97438 * 3 2 1 6 6 C 1.40049 * 120.23512 * 90.29634 * 5 3 2 7 7 F 1.35101 * 120.07643 * 359.97413 * 6 5 3 8 8 C 1.38083 * 119.84768 * 180.30037 * 6 5 3 9 9 C 1.38490 * 120.33310 * 359.67723 * 8 6 5 10 10 C 1.38035 * 120.48202 * 0.02562 * 9 8 6 11 11 C 1.38885 * 120.13990 * 359.97438 * 10 9 8 12 12 N 1.38893 * 120.16589 * 180.02562 * 11 10 9 13 13 C 1.39742 * 120.00391 * 256.56498 * 12 11 10 14 14 C 1.39343 * 119.94994 * 6.98440 * 13 12 11 15 15 C 1.38473 * 120.42281 * 179.97438 * 14 13 12 16 16 C 1.37695 * 120.32793 * 359.97438 * 15 14 13 17 17 C 1.40753 * 119.89309 * 0.02562 * 16 15 14 18 18 C 1.41405 * 120.20605 * 180.26892 * 17 16 15 19 19 H 1.08006 * 119.99885 * 150.76807 * 18 17 16 20 20 C 1.39922 * 120.00356 * 330.77124 * 18 17 16 21 21 N 1.30834 * 120.00033 * 165.76851 * 20 18 17 22 22 Si 1.86801 * 119.99866 * 345.76622 * 20 18 17 23 23 H 1.48509 * 109.46906 * 92.17476 * 22 20 18 24 24 H 1.48494 * 109.47148 * 212.17116 * 22 20 18 25 25 H 1.48496 * 109.47379 * 332.17524 * 22 20 18 26 26 C 1.38285 * 119.95237 * 186.96067 * 13 12 11 27 27 H 1.09001 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47559 * 299.99910 * 1 2 3 29 29 H 1.09002 * 109.47299 * 60.00401 * 1 2 3 30 30 H 1.07999 * 119.83143 * 179.69673 * 8 6 5 31 31 H 1.08003 * 119.75777 * 180.02562 * 9 8 6 32 32 H 1.07999 * 119.92590 * 180.02562 * 10 9 8 33 33 H 0.97006 * 120.00069 * 76.56941 * 12 11 10 34 34 H 1.08001 * 119.78966 * 0.02562 * 14 13 12 35 35 H 1.07996 * 119.83652 * 180.02562 * 15 14 13 36 36 H 1.07991 * 120.05561 * 180.02562 * 16 15 14 37 37 H 0.97004 * 119.99534 * 179.97438 * 21 20 18 38 38 H 1.08003 * 120.16820 * 0.04865 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5332 1.2781 0.0006 6 6 4.2376 1.3211 -1.2091 7 9 3.5696 1.2913 -2.3830 8 6 5.6169 1.3871 -1.1993 9 6 6.3071 1.4178 0.0010 10 6 5.6263 1.3824 1.2013 11 6 4.2391 1.3159 1.2145 12 7 3.5536 1.2807 2.4220 13 6 3.0208 0.0758 2.8882 14 6 3.3005 -1.1138 2.2186 15 6 2.7781 -2.3133 2.6724 16 6 1.9765 -2.3435 3.7915 17 6 1.6852 -1.1499 4.4782 18 6 0.8673 -1.1741 5.6315 19 1 1.0044 -0.4342 6.4063 20 6 -0.1195 -2.1565 5.7690 21 7 -0.6835 -2.3589 6.9320 22 14 -0.6316 -3.1789 4.2919 23 1 0.1816 -4.4206 4.2434 24 1 -2.0690 -3.5329 4.4094 25 1 -0.4146 -2.3962 3.0488 26 6 2.2173 0.0658 4.0136 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 6.1600 1.4153 -2.1323 31 1 7.3858 1.4699 -0.0022 32 1 6.1736 1.4072 2.1320 33 1 3.4445 2.0925 2.9417 34 1 3.9293 -1.1003 1.3407 35 1 3.0013 -3.2297 2.1464 36 1 1.5718 -3.2815 4.1417 37 1 -1.3678 -3.0398 7.0272 38 1 1.9995 0.9873 4.5332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214055738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:43 Heat of formation + Delta-G solvation = -70.615662 kcal Electronic energy + Delta-G solvation = -26142.589350 eV Core-core repulsion = 22250.625584 eV Total energy + Delta-G solvation = -3891.963766 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.15226 -40.54678 -39.17096 -37.82550 -36.16765 -35.22217 -33.30739 -31.43790 -30.32563 -30.26637 -27.93741 -27.30757 -25.13961 -24.15965 -22.74997 -21.32725 -21.03885 -20.38289 -18.23634 -17.68597 -17.55533 -16.96344 -16.89297 -16.03847 -15.81636 -15.69933 -15.53491 -15.17069 -14.94136 -14.54101 -13.83671 -13.57560 -13.43012 -12.92282 -12.74379 -12.61128 -12.42636 -12.34554 -12.05967 -11.97743 -11.77829 -11.59592 -11.03782 -10.97747 -10.55019 -10.52694 -10.49338 -9.79927 -9.59995 -9.54043 -9.20151 -9.07657 -8.83139 -7.67525 -6.92389 -6.77301 -4.50693 0.70503 0.91526 2.19050 2.63946 2.75386 2.82353 3.12909 3.23379 3.28764 3.33189 3.54801 3.99683 4.07453 4.51600 4.62271 4.70190 4.87859 5.01130 5.21254 5.30857 5.44334 5.45222 5.60900 5.75556 5.79090 5.97097 6.01652 6.10319 6.25299 6.39056 6.48574 6.52168 6.69632 6.76053 6.90193 7.19367 7.46918 7.57555 7.68135 7.80748 7.90428 8.16123 8.24043 8.39129 8.67467 8.82975 10.10387 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.004575 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.723051 B = 6118.467610 C = 6750.898503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.331 6.331 3 C 0.528 3.472 4 O -0.499 6.499 5 C -0.153 4.153 6 C 0.142 3.858 7 F -0.132 7.132 8 C -0.165 4.165 9 C -0.062 4.062 10 C -0.138 4.138 11 C 0.247 3.753 12 N -0.719 5.719 13 C 0.217 3.783 14 C -0.272 4.272 15 C -0.046 4.046 16 C -0.266 4.266 17 C 0.121 3.879 18 C -0.446 4.446 19 H 0.089 0.911 20 C 0.083 3.917 21 N -0.814 5.814 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.296 1.296 25 H -0.244 1.244 26 C -0.261 4.261 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.408 0.592 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 4.745 -13.822 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.246 6.246 3 C 0.370 3.630 4 O -0.387 6.387 5 C -0.157 4.157 6 C 0.122 3.878 7 F -0.110 7.110 8 C -0.184 4.184 9 C -0.081 4.081 10 C -0.158 4.158 11 C 0.151 3.849 12 N -0.351 5.351 13 C 0.122 3.878 14 C -0.294 4.294 15 C -0.065 4.065 16 C -0.286 4.286 17 C 0.118 3.882 18 C -0.475 4.475 19 H 0.107 0.893 20 C -0.135 4.135 21 N -0.438 5.438 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.167 1.167 26 C -0.284 4.284 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.299 4.849 -13.745 17.289 hybrid contribution -0.719 -0.189 -0.480 0.885 sum 8.580 4.660 -14.225 17.254 Atomic orbital electron populations 1.23302 0.76019 1.04019 1.02288 1.86726 1.23435 1.31487 1.82939 1.20599 0.88331 0.82183 0.71844 1.90850 1.66384 1.36275 1.45163 1.19707 0.90868 1.11224 0.93950 1.17428 0.90081 1.00785 0.79495 1.91532 1.80847 1.93540 1.45072 1.21018 0.91263 1.05716 1.00367 1.21040 1.00492 0.95658 0.90867 1.21588 0.92781 1.02063 0.99348 1.17050 0.89961 0.93328 0.84563 1.41820 1.62601 1.10133 1.20581 1.17532 0.92864 0.83607 0.93785 1.19862 1.13171 0.91554 1.04856 1.20324 0.95503 0.95727 0.94926 1.20957 1.08578 0.97338 1.01747 1.17430 0.89978 0.90057 0.90759 1.19473 1.13714 1.11681 1.02653 0.89315 1.26154 0.95071 0.95329 0.96953 1.69675 1.21394 1.28474 1.24284 0.86255 0.75773 0.80175 0.83195 1.19774 1.22413 1.16711 1.20427 1.09678 0.97671 1.00657 0.87901 0.91390 0.92269 0.83884 0.84126 0.84016 0.75396 0.89035 0.88797 0.88353 0.90513 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.57 101.05 1.07 1.65 16 2 O -0.33 -6.10 9.95 -40.73 -0.41 -6.50 16 3 C 0.53 9.78 6.12 34.35 0.21 9.99 16 4 O -0.50 -10.08 16.90 -19.30 -0.33 -10.40 16 5 C -0.15 -2.45 5.43 -104.76 -0.57 -3.02 16 6 C 0.14 1.94 7.29 -38.96 -0.28 1.65 16 7 F -0.13 -1.88 16.83 2.25 0.04 -1.84 16 8 C -0.16 -1.64 10.00 -39.55 -0.40 -2.04 16 9 C -0.06 -0.55 10.02 -39.56 -0.40 -0.95 16 10 C -0.14 -1.56 9.95 -39.42 -0.39 -1.95 16 11 C 0.25 3.67 4.48 -83.58 -0.37 3.30 16 12 N -0.72 -12.02 4.88 -8.28 -0.04 -12.07 16 13 C 0.22 4.42 6.15 -83.82 -0.52 3.91 16 14 C -0.27 -5.59 8.60 -39.08 -0.34 -5.92 16 15 C -0.05 -0.99 10.01 -39.69 -0.40 -1.38 16 16 C -0.27 -6.36 7.08 -38.83 -0.27 -6.63 16 17 C 0.12 3.05 5.16 -106.85 -0.55 2.49 16 18 C -0.45 -12.03 9.60 -37.75 -0.36 -12.39 16 19 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 20 C 0.08 2.18 5.46 -17.35 -0.09 2.08 16 21 N -0.81 -21.75 13.93 55.55 0.77 -20.98 16 22 Si 0.92 20.92 24.40 -169.99 -4.15 16.78 16 23 H -0.27 -6.02 6.60 56.52 0.37 -5.64 16 24 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.24 -5.61 6.75 56.52 0.38 -5.23 16 26 C -0.26 -5.96 9.64 -38.67 -0.37 -6.34 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 32 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.41 6.14 8.83 -40.82 -0.36 5.78 16 34 H 0.09 1.77 6.83 -52.49 -0.36 1.41 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.10 2.36 4.24 -52.49 -0.22 2.14 16 37 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 38 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -30.43 333.86 -7.04 -37.48 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.93 Total: 8.05 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -4.04 Total: -15.55 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.73 Total: -33.04 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.73 Total: -16.90 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.15 Total: 16.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.43 -7.04 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214055738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.140 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds