Wall clock time and date at job start Tue Mar 31 2020 11:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34724 * 116.99603 * 2 1 4 4 O 1.21485 * 120.00371 * 359.97438 * 3 2 1 5 5 C 1.47581 * 119.99930 * 180.02562 * 3 2 1 6 6 C 1.39635 * 120.13252 * 359.97438 * 5 3 2 7 7 C 1.38572 * 119.78650 * 179.97438 * 6 5 3 8 8 N 1.39745 * 119.96635 * 180.02562 * 7 6 5 9 9 C 1.38784 * 119.99780 * 335.22216 * 8 7 6 10 10 C 1.39617 * 119.84760 * 327.81976 * 9 8 7 11 11 C 1.36307 * 120.15719 * 179.71556 * 10 9 8 12 12 C 1.40905 * 119.83490 * 0.58703 * 11 10 9 13 13 C 1.41109 * 120.14851 * 179.67082 * 12 11 10 14 14 H 1.08005 * 119.99867 * 27.73011 * 13 12 11 15 15 C 1.39839 * 119.99773 * 207.72356 * 13 12 11 16 16 N 1.30914 * 120.00492 * 12.30255 * 15 13 12 17 17 Si 1.86804 * 119.99871 * 192.29546 * 15 13 12 18 18 H 1.48506 * 109.46850 * 60.00546 * 17 15 13 19 19 H 1.48497 * 109.47256 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47432 * 300.00792 * 17 15 13 21 21 C 1.40901 * 119.70198 * 359.69161 * 12 11 10 22 22 C 1.36306 * 119.83597 * 0.02562 * 21 12 11 23 23 C 1.39142 * 120.06325 * 0.02562 * 7 6 5 24 24 C 1.38094 * 120.27155 * 0.25099 * 23 7 6 25 25 C 1.38342 * 120.20971 * 359.48988 * 24 23 7 26 26 F 1.35097 * 120.03233 * 180.23103 * 25 24 23 27 27 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47813 * 300.00167 * 1 2 3 29 29 H 1.09007 * 109.46924 * 60.00643 * 1 2 3 30 30 H 1.07999 * 120.10852 * 0.02562 * 6 5 3 31 31 H 0.96995 * 119.99606 * 155.22216 * 8 7 6 32 32 H 1.07996 * 119.91813 * 0.02562 * 10 9 8 33 33 H 1.07998 * 120.07751 * 180.26949 * 11 10 9 34 34 H 0.96998 * 120.00687 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.08347 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.92202 * 179.97438 * 22 21 12 37 37 H 1.07999 * 119.86542 * 179.97438 * 23 7 6 38 38 H 1.08002 * 119.89033 * 179.74827 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5374 1.2778 -0.0006 6 6 4.3006 0.1085 -0.0006 7 6 5.6840 0.1895 -0.0016 8 7 6.4515 -0.9783 -0.0022 9 6 5.9211 -2.1575 0.5020 10 6 5.0057 -2.1132 1.5552 11 6 4.4764 -3.2672 2.0515 12 6 4.8646 -4.5074 1.5070 13 6 4.3261 -5.7065 2.0203 14 1 3.3463 -5.7074 2.4746 15 6 5.0610 -6.8935 1.9405 16 7 6.3289 -6.8580 1.6164 17 14 4.2336 -8.5300 2.2967 18 1 3.1141 -8.7365 1.3431 19 1 5.2221 -9.6278 2.1453 20 1 3.7069 -8.5267 3.6851 21 6 5.7934 -4.5450 0.4481 22 6 6.3102 -3.3829 -0.0422 23 6 6.3095 1.4324 -0.0022 24 6 5.5571 2.5903 0.0036 25 6 4.1753 2.5227 -0.0007 26 9 3.4428 3.6578 0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 3.8144 -0.8559 -0.0006 31 1 7.3550 -0.9647 -0.3550 32 1 4.7125 -1.1621 1.9744 33 1 3.7651 -3.2311 2.8633 34 1 6.8388 -7.6813 1.5614 35 1 6.0956 -5.4923 0.0264 36 1 7.0225 -3.4102 -0.8535 37 1 7.3878 1.4917 -0.0026 38 1 6.0490 3.5518 0.0072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215853892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:01 Heat of formation + Delta-G solvation = -76.487877 kcal Electronic energy + Delta-G solvation = -25057.970730 eV Core-core repulsion = 21165.752326 eV Total energy + Delta-G solvation = -3892.218404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.62976 -40.41079 -39.37670 -37.65014 -36.33055 -35.08514 -33.19678 -31.67620 -30.13843 -29.27088 -28.07418 -27.67539 -24.94790 -24.13118 -22.34639 -21.54747 -20.73767 -20.25402 -18.12425 -17.49824 -17.37473 -16.91970 -16.57775 -16.35577 -15.83902 -15.33421 -15.22950 -15.17919 -14.25422 -14.04750 -13.63405 -13.45742 -13.26383 -13.01684 -12.87761 -12.78061 -12.43915 -12.22484 -11.98475 -11.84667 -11.57682 -11.39298 -11.17688 -10.99720 -10.74896 -10.64142 -10.43907 -10.20833 -9.88625 -9.50665 -9.21055 -9.15822 -7.98696 -7.71881 -6.82974 -6.67408 -4.35968 0.64907 1.31915 2.50596 2.69849 2.73939 2.91595 3.02356 3.04983 3.12374 3.75110 3.81753 3.87825 4.35234 4.54805 4.62499 4.81993 5.12722 5.15228 5.19734 5.32133 5.51646 5.54450 5.59411 5.80145 6.04880 6.08838 6.11134 6.15360 6.32398 6.39755 6.61434 6.80345 6.89106 6.95824 7.10850 7.32789 7.45055 7.58045 7.77811 7.91106 8.08176 8.14915 8.26338 8.51908 8.79460 8.86053 10.12861 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003473 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.869463 B = 8059.395901 C = 9412.940628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.346 6.346 3 C 0.510 3.490 4 O -0.501 6.501 5 C -0.125 4.125 6 C -0.093 4.093 7 C 0.193 3.807 8 N -0.665 5.665 9 C 0.015 3.985 10 C -0.113 4.113 11 C -0.200 4.200 12 C 0.100 3.900 13 C -0.457 4.457 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.800 5.800 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.123 4.123 25 C 0.093 3.907 26 F -0.128 7.128 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.156 0.844 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.281 0.719 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 10.123 -3.938 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.262 6.262 3 C 0.355 3.645 4 O -0.390 6.390 5 C -0.128 4.128 6 C -0.115 4.115 7 C 0.089 3.911 8 N -0.284 5.284 9 C -0.079 4.079 10 C -0.134 4.134 11 C -0.220 4.220 12 C 0.097 3.903 13 C -0.487 4.487 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.426 5.426 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.160 4.160 22 C -0.142 4.142 23 C -0.158 4.158 24 C -0.142 4.142 25 C 0.071 3.929 26 F -0.106 7.106 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.729 10.137 -3.896 10.996 hybrid contribution -0.151 -0.556 0.120 0.589 sum -1.881 9.581 -3.775 10.468 Atomic orbital electron populations 1.23289 0.75997 1.03965 1.02352 1.86626 1.23473 1.32061 1.84038 1.20985 0.88810 0.81693 0.73035 1.90860 1.66660 1.35864 1.45572 1.18889 0.89611 0.93296 1.11006 1.21291 0.92345 0.98375 0.99497 1.17765 0.90615 0.87018 0.95736 1.41657 1.15497 1.05652 1.65600 1.17158 1.06095 0.84182 1.00433 1.20187 0.99894 0.97373 0.95927 1.20641 1.06180 0.92359 1.02849 1.17645 0.90737 0.92062 0.89822 1.19504 1.03113 0.92146 1.33926 0.90435 1.25890 0.94373 1.01199 0.92907 1.69804 1.06987 1.30112 1.35690 0.86321 0.79867 0.80285 0.79991 1.18831 1.20345 1.19018 1.20991 1.00852 0.96568 0.97591 1.20250 1.02117 0.91914 0.99927 1.20770 1.00205 0.90168 1.04697 1.20726 0.90928 0.99644 1.02942 1.17357 0.89078 0.80750 1.05698 1.91529 1.77269 1.48047 1.93755 0.87727 0.91877 0.91978 0.82614 0.76508 0.88897 0.88543 0.90814 0.85851 0.89059 0.84732 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.35 -5.30 9.81 -40.56 -0.40 -5.70 16 3 C 0.51 8.46 7.89 34.54 0.27 8.73 16 4 O -0.50 -9.10 15.12 -19.25 -0.29 -9.39 16 5 C -0.13 -1.99 5.88 -104.95 -0.62 -2.60 16 6 C -0.09 -1.48 7.40 -38.94 -0.29 -1.77 16 7 C 0.19 2.84 6.05 -83.79 -0.51 2.33 16 8 N -0.66 -10.40 5.42 -8.33 -0.05 -10.44 16 9 C 0.02 0.29 5.92 -83.69 -0.50 -0.20 16 10 C -0.11 -2.35 7.63 -39.76 -0.30 -2.65 16 11 C -0.20 -4.58 9.74 -39.27 -0.38 -4.96 16 12 C 0.10 2.49 5.56 -106.79 -0.59 1.89 16 13 C -0.46 -11.46 9.04 -37.89 -0.34 -11.81 16 14 H 0.08 1.87 7.87 -52.48 -0.41 1.45 16 15 C 0.07 1.75 5.23 -17.34 -0.09 1.66 16 16 N -0.80 -19.64 10.84 55.54 0.60 -19.04 16 17 Si 0.91 17.89 29.58 -169.99 -5.03 12.87 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.14 -3.35 8.61 -39.27 -0.34 -3.69 16 22 C -0.12 -2.55 9.89 -39.76 -0.39 -2.95 16 23 C -0.14 -1.62 9.93 -39.30 -0.39 -2.01 16 24 C -0.12 -1.47 10.00 -39.60 -0.40 -1.87 16 25 C 0.09 1.38 7.28 -38.93 -0.28 1.10 16 26 F -0.13 -2.05 15.54 2.25 0.03 -2.02 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.16 2.75 5.82 -52.49 -0.31 2.44 16 31 H 0.40 5.24 8.88 -40.82 -0.36 4.88 16 32 H 0.09 1.80 6.55 -52.49 -0.34 1.46 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 35 H 0.12 3.08 6.18 -52.49 -0.32 2.75 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -27.83 334.49 -8.01 -35.84 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.84 Total: 10.15 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.08 Total: -17.30 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.56 Total: -29.49 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.69 Total: -15.09 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.83 -8.01 -35.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215853892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.646 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds