Wall clock time and date at job start Tue Mar 31 2020 11:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34724 * 116.99603 * 2 1 4 4 O 1.21485 * 120.00371 * 359.97438 * 3 2 1 5 5 C 1.47581 * 119.99930 * 180.02562 * 3 2 1 6 6 C 1.39635 * 120.13252 * 359.97438 * 5 3 2 7 7 C 1.38572 * 119.78650 * 179.97438 * 6 5 3 8 8 N 1.39745 * 119.96635 * 180.02562 * 7 6 5 9 9 C 1.38784 * 119.99780 * 335.22216 * 8 7 6 10 10 C 1.39617 * 119.84760 * 327.81976 * 9 8 7 11 11 C 1.36307 * 120.15719 * 179.71556 * 10 9 8 12 12 C 1.40905 * 119.83490 * 0.58703 * 11 10 9 13 13 C 1.41109 * 120.14851 * 179.67082 * 12 11 10 14 14 H 1.08005 * 119.99867 * 27.73011 * 13 12 11 15 15 C 1.39839 * 119.99773 * 207.72356 * 13 12 11 16 16 N 1.30914 * 120.00492 * 12.30255 * 15 13 12 17 17 Si 1.86804 * 119.99871 * 192.29546 * 15 13 12 18 18 H 1.48506 * 109.46850 * 60.00546 * 17 15 13 19 19 H 1.48497 * 109.47256 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47432 * 300.00792 * 17 15 13 21 21 C 1.40901 * 119.70198 * 359.69161 * 12 11 10 22 22 C 1.36306 * 119.83597 * 0.02562 * 21 12 11 23 23 C 1.39142 * 120.06325 * 0.02562 * 7 6 5 24 24 C 1.38094 * 120.27155 * 0.25099 * 23 7 6 25 25 C 1.38342 * 120.20971 * 359.48988 * 24 23 7 26 26 F 1.35097 * 120.03233 * 180.23103 * 25 24 23 27 27 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47813 * 300.00167 * 1 2 3 29 29 H 1.09007 * 109.46924 * 60.00643 * 1 2 3 30 30 H 1.07999 * 120.10852 * 0.02562 * 6 5 3 31 31 H 0.96995 * 119.99606 * 155.22216 * 8 7 6 32 32 H 1.07996 * 119.91813 * 0.02562 * 10 9 8 33 33 H 1.07998 * 120.07751 * 180.26949 * 11 10 9 34 34 H 0.96998 * 120.00687 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.08347 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.92202 * 179.97438 * 22 21 12 37 37 H 1.07999 * 119.86542 * 179.97438 * 23 7 6 38 38 H 1.08002 * 119.89033 * 179.74827 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5374 1.2778 -0.0006 6 6 4.3006 0.1085 -0.0006 7 6 5.6840 0.1895 -0.0016 8 7 6.4515 -0.9783 -0.0022 9 6 5.9211 -2.1575 0.5020 10 6 5.0057 -2.1132 1.5552 11 6 4.4764 -3.2672 2.0515 12 6 4.8646 -4.5074 1.5070 13 6 4.3261 -5.7065 2.0203 14 1 3.3463 -5.7074 2.4746 15 6 5.0610 -6.8935 1.9405 16 7 6.3289 -6.8580 1.6164 17 14 4.2336 -8.5300 2.2967 18 1 3.1141 -8.7365 1.3431 19 1 5.2221 -9.6278 2.1453 20 1 3.7069 -8.5267 3.6851 21 6 5.7934 -4.5450 0.4481 22 6 6.3102 -3.3829 -0.0422 23 6 6.3095 1.4324 -0.0022 24 6 5.5571 2.5903 0.0036 25 6 4.1753 2.5227 -0.0007 26 9 3.4428 3.6578 0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 3.8144 -0.8559 -0.0006 31 1 7.3550 -0.9647 -0.3550 32 1 4.7125 -1.1621 1.9744 33 1 3.7651 -3.2311 2.8633 34 1 6.8388 -7.6813 1.5614 35 1 6.0956 -5.4923 0.0264 36 1 7.0225 -3.4102 -0.8535 37 1 7.3878 1.4917 -0.0026 38 1 6.0490 3.5518 0.0072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215853892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:00 Heat of formation + Delta-G solvation = -89.842882 kcal Electronic energy + Delta-G solvation = -25058.549846 eV Core-core repulsion = 21165.752326 eV Total energy + Delta-G solvation = -3892.797521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.84143 -41.64094 -40.69563 -39.15888 -37.58213 -36.56072 -34.83006 -32.81636 -31.75423 -30.89871 -29.47672 -28.69953 -26.56731 -25.31788 -23.62198 -23.10201 -22.25583 -21.66367 -19.40736 -19.11794 -18.67250 -18.20046 -17.89283 -17.55424 -17.22085 -16.80414 -16.51197 -16.42274 -15.78069 -15.29154 -15.16857 -14.58542 -14.51379 -14.40649 -14.21414 -14.02770 -13.86615 -13.81818 -13.36101 -13.20461 -13.00886 -12.76378 -12.70079 -12.48230 -12.26873 -11.87864 -11.82312 -11.65323 -11.52270 -11.19643 -10.84622 -10.25378 -9.49498 -9.43515 -8.56881 -8.17229 -6.17435 -0.51374 0.16803 0.99824 1.14947 1.37759 1.41727 1.51746 1.56348 1.60067 2.24699 2.52534 2.60093 2.82165 3.20798 3.51082 3.75721 3.78580 4.11129 4.17894 4.23291 4.28380 4.37336 4.41188 4.53679 4.64119 4.73770 4.96870 5.01475 5.07270 5.13974 5.15545 5.21078 5.26819 5.34654 5.57972 5.69934 5.75991 5.92696 6.11746 6.33871 6.53855 6.56303 6.74929 6.94874 6.99695 7.12512 8.40606 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.003473 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.869463 B = 8059.395901 C = 9412.940628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.507 3.493 4 O -0.525 6.525 5 C -0.142 4.142 6 C -0.104 4.104 7 C 0.179 3.821 8 N -0.662 5.662 9 C 0.047 3.953 10 C -0.118 4.118 11 C -0.211 4.211 12 C 0.066 3.934 13 C -0.498 4.498 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.833 5.833 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.263 1.263 21 C -0.158 4.158 22 C -0.128 4.128 23 C -0.105 4.105 24 C -0.108 4.108 25 C 0.087 3.913 26 F -0.137 7.137 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.417 0.583 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.286 0.714 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.176 0.824 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 11.942 -4.462 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.353 3.647 4 O -0.416 6.416 5 C -0.145 4.145 6 C -0.126 4.126 7 C 0.077 3.923 8 N -0.284 5.284 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.231 4.231 12 C 0.063 3.937 13 C -0.528 4.528 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.460 5.460 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.178 4.178 22 C -0.148 4.148 23 C -0.127 4.127 24 C -0.127 4.127 25 C 0.065 3.935 26 F -0.115 7.115 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.255 0.745 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.194 0.806 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.318 12.001 -4.436 12.799 hybrid contribution -0.590 -0.792 0.207 1.009 sum -0.908 11.209 -4.229 12.015 Atomic orbital electron populations 1.23605 0.74075 1.05779 1.02926 1.86620 1.25548 1.31679 1.83646 1.21241 0.89358 0.81649 0.72443 1.90833 1.67247 1.36496 1.47029 1.18958 0.89270 0.93953 1.12333 1.21076 0.93164 0.97434 1.00935 1.17914 0.90016 0.87716 0.96634 1.41454 1.16346 1.04572 1.66070 1.17150 1.03760 0.85365 0.98556 1.20308 1.00106 0.97142 0.96262 1.20772 1.06496 0.92735 1.03134 1.17922 0.92040 0.92816 0.90893 1.19703 1.03531 0.93533 1.36062 0.91002 1.26619 0.94734 1.04072 0.92427 1.69860 1.08031 1.31077 1.37028 0.85306 0.78869 0.76170 0.79688 1.18612 1.19356 1.18761 1.20940 1.01720 0.97045 0.98089 1.20466 1.02429 0.91524 1.00427 1.21183 1.02170 0.88439 1.00875 1.21149 0.89418 1.01449 1.00654 1.17743 0.90312 0.79991 1.05429 1.91511 1.77819 1.48381 1.93797 0.85353 0.91504 0.91247 0.84927 0.74545 0.87531 0.88607 0.90376 0.87586 0.86506 0.80621 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.36 -11.15 9.81 -56.34 -0.55 -11.70 16 3 C 0.51 16.86 7.89 70.29 0.55 17.42 16 4 O -0.52 -19.14 15.12 19.88 0.30 -18.84 16 5 C -0.14 -4.37 5.88 -20.08 -0.12 -4.49 16 6 C -0.10 -3.18 7.40 22.69 0.17 -3.01 16 7 C 0.18 4.71 6.05 38.18 0.23 4.94 16 8 N -0.66 -18.63 5.42 -180.25 -0.98 -19.61 16 9 C 0.05 1.78 5.92 38.71 0.23 2.01 16 10 C -0.12 -4.85 7.63 22.15 0.17 -4.68 16 11 C -0.21 -9.96 9.74 22.47 0.22 -9.74 16 12 C 0.07 3.41 5.56 -21.27 -0.12 3.29 16 13 C -0.50 -26.21 9.04 23.36 0.21 -26.00 16 14 H 0.07 3.67 7.87 -2.91 -0.02 3.65 16 15 C 0.03 1.72 5.23 85.22 0.45 2.16 16 16 N -0.83 -42.30 10.84 21.81 0.24 -42.06 16 17 Si 0.98 37.60 29.58 68.60 2.03 39.63 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 C -0.16 -7.78 8.61 22.47 0.19 -7.59 16 22 C -0.13 -5.30 9.89 22.15 0.22 -5.08 16 23 C -0.10 -1.95 9.93 22.45 0.22 -1.73 16 24 C -0.11 -2.06 10.00 22.26 0.22 -1.83 16 25 C 0.09 2.35 7.28 22.69 0.17 2.52 16 26 F -0.14 -4.15 15.54 44.97 0.70 -3.45 16 27 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.13 4.70 5.82 -2.91 -0.02 4.69 16 31 H 0.42 9.18 8.88 -92.71 -0.82 8.36 16 32 H 0.11 4.06 6.55 -2.91 -0.02 4.04 16 33 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 34 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 35 H 0.11 5.53 6.18 -2.91 -0.02 5.51 16 36 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -63.41 334.49 6.25 -57.17 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.30 Total: 28.83 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.21 Total: -29.96 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.74 Total: -61.67 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.25 Total: -30.54 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -63.41 6.25 -57.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215853892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.674 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds