Wall clock time and date at job start Tue Mar 31 2020 11:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34735 * 117.00162 * 2 1 4 4 O 1.21494 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.47578 * 120.00334 * 180.02562 * 3 2 1 6 6 C 1.39658 * 120.13563 * 0.28030 * 5 3 2 7 7 C 1.38514 * 119.79217 * 180.24649 * 6 5 3 8 8 N 1.39879 * 119.96650 * 179.77063 * 7 6 5 9 9 C 1.39713 * 119.99918 * 333.80979 * 8 7 6 10 10 C 1.39359 * 119.95124 * 328.03634 * 9 8 7 11 11 C 1.38469 * 120.41967 * 180.02562 * 10 9 8 12 12 C 1.37698 * 120.33074 * 0.04742 * 11 10 9 13 13 C 1.40752 * 119.89168 * 359.97438 * 12 11 10 14 14 C 1.41415 * 120.20202 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00286 * 335.25951 * 14 13 12 16 16 C 1.39925 * 119.99574 * 155.26847 * 14 13 12 17 17 N 1.30829 * 120.00386 * 344.15416 * 16 14 13 18 18 Si 1.86805 * 120.00026 * 164.15777 * 16 14 13 19 19 H 1.48504 * 109.46787 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47398 * 119.99518 * 18 16 14 21 21 H 1.48493 * 109.47251 * 239.99929 * 18 16 14 22 22 C 1.38295 * 119.95367 * 148.08916 * 9 8 7 23 23 C 1.39092 * 120.06678 * 359.49571 * 7 6 5 24 24 C 1.38112 * 120.27898 * 0.23163 * 23 7 6 25 25 C 1.38331 * 120.20648 * 0.02562 * 24 23 7 26 26 F 1.35095 * 120.03228 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46947 * 299.99442 * 1 2 3 28 28 H 1.08996 * 109.47268 * 59.99673 * 1 2 3 29 29 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.10262 * 359.97438 * 6 5 3 31 31 H 0.97000 * 120.00464 * 153.80235 * 8 7 6 32 32 H 1.07999 * 119.79138 * 0.05032 * 10 9 8 33 33 H 1.08001 * 119.83685 * 180.02562 * 11 10 9 34 34 H 1.07994 * 120.05167 * 179.97438 * 12 11 10 35 35 H 0.97000 * 120.00446 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.16678 * 0.24401 * 22 9 8 37 37 H 1.08001 * 119.86072 * 180.25167 * 23 7 6 38 38 H 1.07997 * 119.89679 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5375 1.2778 -0.0006 6 6 4.3009 0.1083 -0.0070 7 6 5.6837 0.1891 -0.0023 8 7 6.4519 -0.9799 -0.0039 9 6 5.9264 -2.1617 0.5244 10 6 5.0267 -2.1091 1.5873 11 6 4.5004 -3.2744 2.1187 12 6 4.8614 -4.4990 1.6028 13 6 5.7695 -4.5679 0.5296 14 6 6.1452 -5.8221 -0.0050 15 1 6.0839 -6.7100 0.6066 16 6 6.5967 -5.9124 -1.3263 17 7 6.3859 -4.9252 -2.1586 18 14 7.5003 -7.4426 -1.9021 19 1 7.6096 -8.4056 -0.7769 20 1 6.7498 -8.0696 -3.0196 21 1 8.8601 -7.0690 -2.3671 22 6 6.3008 -3.3822 -0.0075 23 6 6.3091 1.4315 -0.0019 24 6 5.5570 2.5898 -0.0012 25 6 4.1753 2.5224 -0.0005 26 9 3.4430 3.6577 0.0007 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.8146 -0.8560 -0.0112 31 1 7.3493 -0.9700 -0.3719 32 1 4.7378 -1.1534 1.9989 33 1 3.8035 -3.2227 2.9421 34 1 4.4485 -5.4050 2.0210 35 1 6.6986 -4.9880 -3.0747 36 1 7.0016 -3.4245 -0.8281 37 1 7.3875 1.4906 -0.0023 38 1 6.0490 3.5512 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215855017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:04 Heat of formation + Delta-G solvation = -92.234419 kcal Electronic energy + Delta-G solvation = -25214.792637 eV Core-core repulsion = 21321.891411 eV Total energy + Delta-G solvation = -3892.901226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88210 -41.65032 -40.66270 -39.09896 -37.58480 -36.39751 -35.14582 -32.86035 -31.41257 -31.15556 -28.82930 -28.54151 -27.18781 -25.38030 -23.77782 -22.99530 -22.27380 -21.58764 -19.48478 -19.15098 -18.63462 -18.00219 -17.86774 -17.56403 -17.08522 -16.64312 -16.52666 -16.41897 -16.26592 -15.31954 -15.15194 -14.66277 -14.54616 -14.43077 -14.33472 -14.04390 -13.93246 -13.67057 -13.46430 -13.01612 -12.94202 -12.74953 -12.63548 -12.47645 -12.11899 -11.88162 -11.79809 -11.63210 -11.59225 -11.29418 -10.94314 -10.28317 -9.58214 -9.29021 -8.61660 -8.04729 -6.34439 -0.54563 0.13112 1.01089 1.15116 1.39451 1.41458 1.53493 1.55782 1.58656 2.23145 2.43784 2.55610 2.79794 3.15934 3.48240 3.74592 3.78112 4.06596 4.13732 4.23062 4.28329 4.36607 4.54106 4.63416 4.69438 4.71827 4.92534 4.95937 5.02597 5.12503 5.17372 5.18752 5.25263 5.38277 5.50876 5.63853 5.91653 6.04018 6.14468 6.17021 6.50010 6.53525 6.82473 6.84936 6.99205 7.08905 8.35724 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003598 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.606524 B = 7779.761019 C = 8478.126750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.524 6.524 5 C -0.145 4.145 6 C -0.094 4.094 7 C 0.175 3.825 8 N -0.676 5.676 9 C 0.179 3.821 10 C -0.266 4.266 11 C -0.071 4.071 12 C -0.258 4.258 13 C 0.099 3.901 14 C -0.497 4.497 15 H 0.074 0.926 16 C 0.039 3.961 17 N -0.822 5.822 18 Si 0.978 3.022 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.217 4.217 23 C -0.099 4.099 24 C -0.109 4.109 25 C 0.096 3.904 26 F -0.134 7.134 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.286 0.714 36 H 0.110 0.890 37 H 0.176 0.824 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 10.567 1.237 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.355 3.645 4 O -0.415 6.415 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.074 3.926 8 N -0.299 5.299 9 C 0.083 3.917 10 C -0.287 4.287 11 C -0.090 4.090 12 C -0.279 4.279 13 C 0.096 3.904 14 C -0.527 4.527 15 H 0.092 0.908 16 C -0.176 4.176 17 N -0.448 5.448 18 Si 0.799 3.201 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.239 4.239 23 C -0.121 4.121 24 C -0.128 4.128 25 C 0.074 3.926 26 F -0.112 7.112 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.193 0.807 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.936 10.885 1.042 10.975 hybrid contribution -0.064 -0.708 -0.515 0.878 sum -1.000 10.176 0.527 10.239 Atomic orbital electron populations 1.23615 0.74001 1.05812 1.02963 1.86627 1.25616 1.31641 1.83626 1.21174 0.89223 0.81686 0.72457 1.90835 1.67175 1.36436 1.47024 1.18957 0.89445 0.93813 1.12542 1.21097 0.93068 0.97565 0.99894 1.17910 0.90108 0.87481 0.97090 1.42025 1.17495 1.05307 1.65062 1.17574 0.96266 0.85210 0.92633 1.20377 1.08883 0.97536 1.01912 1.20659 0.98075 0.92027 0.98234 1.21141 1.05316 0.96740 1.04658 1.17751 0.88666 0.93406 0.90578 1.19849 1.40364 0.94780 0.97690 0.90770 1.26655 0.93970 1.00795 0.96159 1.69876 1.35502 1.33683 1.05752 0.85219 0.78428 0.77818 0.78626 1.18341 1.19397 1.18843 1.20981 1.07659 0.90809 1.04452 1.21217 1.02239 0.88445 1.00194 1.21161 0.89444 1.01379 1.00837 1.17728 0.90275 0.80001 1.04568 1.91519 1.77774 1.48233 1.93693 0.91263 0.91410 0.85303 0.85030 0.74747 0.87538 0.86339 0.88648 0.90304 0.87177 0.80684 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.36 -11.37 9.81 -56.45 -0.55 -11.93 16 3 C 0.51 17.24 7.89 70.29 0.55 17.80 16 4 O -0.52 -19.24 15.12 19.86 0.30 -18.94 16 5 C -0.14 -4.62 5.88 -20.08 -0.12 -4.74 16 6 C -0.09 -3.10 7.45 22.68 0.17 -2.93 16 7 C 0.17 5.11 6.02 38.13 0.23 5.34 16 8 N -0.68 -22.25 5.46 -180.71 -0.99 -23.24 16 9 C 0.18 7.49 5.89 38.17 0.22 7.72 16 10 C -0.27 -10.90 7.79 22.59 0.18 -10.72 16 11 C -0.07 -3.01 10.01 22.20 0.22 -2.78 16 12 C -0.26 -12.28 9.79 22.76 0.22 -12.05 16 13 C 0.10 5.13 5.58 -21.31 -0.12 5.01 16 14 C -0.50 -25.94 9.06 23.46 0.21 -25.73 16 15 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 16 C 0.04 1.90 5.18 85.25 0.44 2.34 16 17 N -0.82 -41.20 10.86 21.82 0.24 -40.96 16 18 Si 0.98 36.88 29.59 68.60 2.03 38.91 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 C -0.22 -10.57 8.59 22.86 0.20 -10.38 16 23 C -0.10 -2.06 9.93 22.44 0.22 -1.84 16 24 C -0.11 -2.21 10.00 22.26 0.22 -1.99 16 25 C 0.10 2.67 7.28 22.68 0.17 2.84 16 26 F -0.13 -4.10 15.54 44.97 0.70 -3.40 16 27 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.13 5.04 5.93 -2.91 -0.02 5.02 16 31 H 0.41 11.72 8.89 -92.71 -0.82 10.90 16 32 H 0.11 4.03 6.60 -2.91 -0.02 4.01 16 33 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 36 H 0.11 5.60 6.11 -2.91 -0.02 5.58 16 37 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -63.25 334.98 6.24 -57.01 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.30 Total: 32.81 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.22 Total: -30.27 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.75 Total: -64.20 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.25 Total: -30.86 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.70 Total: -3.40 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -63.25 6.24 -57.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215855017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.226 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds