Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36095 * 117.00454 * 2 1 4 4 C 1.38467 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.09996 * 180.02562 * 4 3 2 6 6 C 1.38901 * 120.11465 * 0.02562 * 5 4 3 7 7 N 1.39934 * 119.99752 * 179.97438 * 6 5 4 8 8 C 1.39699 * 120.00116 * 154.17576 * 7 6 5 9 9 C 1.39353 * 119.95626 * 328.01230 * 8 7 6 10 10 C 1.38471 * 120.42476 * 179.97438 * 9 8 7 11 11 C 1.37691 * 120.32552 * 0.04883 * 10 9 8 12 12 C 1.40755 * 119.89823 * 359.97244 * 11 10 9 13 13 C 1.41409 * 120.20714 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00153 * 334.71486 * 13 12 11 15 15 C 1.39924 * 120.00100 * 154.71725 * 13 12 11 16 16 N 1.30831 * 120.00078 * 344.26998 * 15 13 12 17 17 Si 1.86804 * 120.00144 * 164.27284 * 15 13 12 18 18 H 1.48501 * 109.47264 * 89.99995 * 17 15 13 19 19 H 1.48502 * 109.46829 * 209.99976 * 17 15 13 20 20 H 1.48502 * 109.47122 * 329.99705 * 17 15 13 21 21 C 1.38313 * 119.95166 * 148.03223 * 8 7 6 22 22 C 1.38817 * 120.00768 * 0.23975 * 6 5 4 23 23 C 1.38729 * 119.90255 * 359.48367 * 22 6 5 24 24 S 1.76206 * 120.05504 * 180.25082 * 23 22 6 25 25 C 1.81400 * 102.99794 * 0.28608 * 24 23 22 26 26 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47054 * 299.99529 * 1 2 3 28 28 H 1.08998 * 109.47180 * 60.00176 * 1 2 3 29 29 H 1.08001 * 119.94903 * 0.04363 * 4 3 2 30 30 H 1.07999 * 119.94317 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00065 * 334.17970 * 7 6 5 32 32 H 1.08003 * 119.78773 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.83810 * 180.02562 * 10 9 8 34 34 H 1.08005 * 120.05508 * 179.97438 * 11 10 9 35 35 H 0.97002 * 120.00319 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.15943 * 0.27638 * 21 8 7 37 37 H 1.07997 * 120.04513 * 179.74511 * 22 6 5 38 38 H 1.08999 * 109.47174 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.46904 * 299.99438 * 25 24 23 40 40 H 1.08997 * 109.47303 * 59.99867 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.2929 2.3740 0.0005 5 6 1.9186 3.6068 0.0000 6 6 3.3054 3.6845 -0.0016 7 7 3.9362 4.9336 -0.0027 8 6 5.2237 5.0665 0.5228 9 6 5.6290 4.2591 1.5838 10 6 6.9031 4.3822 2.1118 11 6 7.7839 5.3053 1.5943 12 6 7.3888 6.1282 0.5229 13 6 8.2879 7.0788 -0.0133 14 1 9.0849 7.4737 0.5992 15 6 8.1449 7.5079 -1.3374 16 7 7.3974 6.8279 -2.1684 17 14 9.0214 9.0517 -1.9188 18 1 10.3637 8.6916 -2.4421 19 1 8.2270 9.6962 -2.9954 20 1 9.1701 9.9947 -0.7813 21 6 6.0944 5.9995 -0.0105 22 6 4.0658 2.5231 -0.0077 23 6 3.4386 1.2857 -0.0014 24 16 4.3999 -0.1910 -0.0024 25 6 6.1038 0.4314 -0.0038 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2144 2.3166 0.0017 30 1 1.3280 4.5110 0.0000 31 1 3.4793 5.7073 -0.3683 32 1 4.9451 3.5320 1.9965 33 1 7.2074 3.7513 2.9339 34 1 8.7766 5.3979 2.0098 35 1 7.2979 7.1255 -3.0862 36 1 5.7798 6.6291 -0.8297 37 1 5.1441 2.5828 -0.0131 38 1 6.7976 -0.4092 -0.0050 39 1 6.2680 1.0387 -0.8939 40 1 6.2696 1.0386 0.8861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215936017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = -1.077805 kcal Electronic energy + Delta-G solvation = -23160.377604 eV Core-core repulsion = 19837.642402 eV Total energy + Delta-G solvation = -3322.735202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20376 -39.93995 -38.43185 -36.08382 -35.06376 -32.50498 -31.41852 -30.97294 -29.89134 -28.81874 -27.47718 -27.19258 -24.16994 -23.18702 -22.76242 -21.69990 -19.54943 -19.08353 -18.35193 -17.88221 -17.10959 -16.61038 -16.57251 -16.47056 -16.24511 -15.37012 -15.23331 -14.99196 -14.74606 -14.64963 -14.49948 -14.19918 -13.95047 -13.63294 -13.54095 -13.36331 -13.07672 -12.77415 -12.75805 -12.54421 -12.28639 -12.14688 -11.95920 -11.62807 -11.60989 -11.23306 -11.19380 -10.92195 -10.57189 -9.41694 -9.31569 -8.64027 -8.39926 -7.82775 -6.37263 0.17979 0.40250 0.62358 1.01347 1.20815 1.38456 1.47489 1.49454 1.54731 2.20634 2.41432 2.59078 2.68555 2.81330 3.75420 3.85070 4.06516 4.20130 4.22040 4.32425 4.40236 4.47396 4.48108 4.56055 4.66580 4.68005 4.77166 4.81440 4.86226 4.94301 5.14179 5.21020 5.24868 5.28258 5.37055 5.53147 5.60063 5.91139 6.02456 6.11828 6.17947 6.45304 6.50917 6.82987 6.88993 6.96718 7.08152 8.33470 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.003468 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.532207 B = 8072.019364 C = 8586.030235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.090 3.910 4 C -0.146 4.146 5 C -0.143 4.143 6 C 0.170 3.830 7 N -0.684 5.684 8 C 0.184 3.816 9 C -0.268 4.268 10 C -0.070 4.070 11 C -0.260 4.260 12 C 0.101 3.899 13 C -0.498 4.498 14 H 0.076 0.924 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.979 3.021 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.221 4.221 22 C -0.156 4.156 23 C -0.101 4.101 24 S -0.108 6.108 25 C -0.142 4.142 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.408 0.592 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.286 0.714 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -8.997 1.288 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.039 3.961 4 C -0.167 4.167 5 C -0.167 4.167 6 C 0.069 3.931 7 N -0.308 5.308 8 C 0.088 3.912 9 C -0.290 4.290 10 C -0.089 4.089 11 C -0.280 4.280 12 C 0.098 3.902 13 C -0.527 4.527 14 H 0.094 0.906 15 C -0.178 4.178 16 N -0.449 5.449 17 Si 0.800 3.200 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.244 4.244 22 C -0.184 4.184 23 C -0.215 4.215 24 S 0.133 5.867 25 C -0.311 4.311 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.184 0.816 30 H 0.168 0.832 31 H 0.244 0.756 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.091 0.909 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.286 -10.494 1.089 16.194 hybrid contribution 0.747 2.540 -0.541 2.702 sum -11.539 -7.954 0.548 14.026 Atomic orbital electron populations 1.23331 0.76552 1.05427 1.02261 1.86103 1.23214 1.25816 1.89239 1.18298 0.89765 0.85716 1.02338 1.21173 1.01014 0.90122 1.04391 1.20858 0.91452 0.99093 1.05278 1.17796 0.92097 0.84970 0.98208 1.42027 1.14869 1.08000 1.65882 1.17631 0.84313 0.96820 0.92441 1.20331 0.98403 1.08169 1.02053 1.20646 0.93094 0.97001 0.98133 1.21132 0.99653 1.02459 1.04768 1.17736 0.91590 0.90288 0.90536 1.19817 1.13292 1.22154 0.97484 0.90629 1.26705 0.95076 0.99771 0.96234 1.69890 1.32853 1.36436 1.05686 0.85247 0.78649 0.77587 0.78495 1.18851 1.19182 1.18297 1.20945 0.93471 1.05367 1.04618 1.20832 0.99986 0.90320 1.07242 1.20877 0.94357 0.96743 1.09498 1.85162 1.00679 1.08113 1.92704 1.23714 0.95578 1.06401 1.05400 0.86541 0.91619 0.91646 0.81598 0.83198 0.75576 0.88042 0.86234 0.88485 0.90374 0.87625 0.85943 0.85164 0.90906 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.52 9.86 -94.63 -0.93 -9.45 16 3 C 0.09 2.61 6.69 22.59 0.15 2.76 16 4 C -0.15 -3.56 9.03 22.33 0.20 -3.36 16 5 C -0.14 -3.89 9.94 22.43 0.22 -3.67 16 6 C 0.17 5.89 6.03 38.15 0.23 6.12 16 7 N -0.68 -25.99 5.46 -180.59 -0.99 -26.98 16 8 C 0.18 8.34 5.89 38.17 0.22 8.56 16 9 C -0.27 -11.67 7.79 22.59 0.18 -11.50 16 10 C -0.07 -3.05 10.01 22.20 0.22 -2.83 16 11 C -0.26 -12.68 9.79 22.76 0.22 -12.45 16 12 C 0.10 5.43 5.57 -21.31 -0.12 5.31 16 13 C -0.50 -26.64 9.06 23.46 0.21 -26.43 16 14 H 0.08 3.91 7.89 -2.91 -0.02 3.88 16 15 C 0.04 1.85 5.18 85.25 0.44 2.29 16 16 N -0.82 -42.63 10.89 21.82 0.24 -42.40 16 17 Si 0.98 37.90 29.59 68.60 2.03 39.93 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 21 C -0.22 -11.40 8.58 22.86 0.20 -11.20 16 22 C -0.16 -5.68 7.20 22.53 0.16 -5.52 16 23 C -0.10 -3.36 6.12 22.66 0.14 -3.22 16 24 S -0.11 -3.25 22.04 -56.49 -1.25 -4.50 16 25 C -0.14 -3.94 9.15 113.37 1.04 -2.90 16 26 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 28 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 29 H 0.17 2.71 6.28 -2.91 -0.02 2.70 16 30 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.41 13.89 8.89 -92.70 -0.82 13.07 16 32 H 0.10 4.20 6.60 -2.91 -0.02 4.18 16 33 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 36 H 0.11 5.69 6.15 -2.91 -0.02 5.68 16 37 H 0.12 4.92 4.19 -2.91 -0.01 4.91 16 38 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.07 2.19 7.73 -2.39 -0.02 2.17 16 40 H 0.08 2.34 7.76 -2.39 -0.02 2.32 16 Total: -1.00 -62.43 344.57 4.19 -58.24 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: 0.25 Total: 41.80 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 4.83 Total: -56.64 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.75 Total: -69.38 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.93 Total: -9.45 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.25 Total: -4.50 kcal Total: -62.43 4.19 -58.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215936017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.159 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds