Wall clock time and date at job start Tue Mar 31 2020 11:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35814 * 117.00063 * 2 1 4 4 C 1.38266 * 120.12869 * 0.23185 * 3 2 1 5 5 C 1.39637 * 119.80977 * 180.25508 * 4 3 2 6 6 C 1.47728 * 119.96875 * 179.74919 * 5 4 3 7 7 N 1.34780 * 119.99968 * 180.02562 * 6 5 4 8 8 O 1.21570 * 120.00124 * 0.02562 * 6 5 4 9 9 C 1.39825 * 120.06248 * 359.76147 * 5 4 3 10 10 C 1.36532 * 120.25882 * 0.02562 * 9 5 4 11 11 C 1.39740 * 120.19089 * 359.97438 * 10 9 5 12 12 C 1.47722 * 120.03060 * 180.02562 * 11 10 9 13 13 C 1.40048 * 119.90999 * 64.99856 * 12 11 10 14 14 C 1.36180 * 120.13798 * 180.02562 * 13 12 11 15 15 C 1.41014 * 119.93145 * 0.27711 * 14 13 12 16 16 C 1.40967 * 120.08787 * 179.72511 * 15 14 13 17 17 H 1.08001 * 119.99715 * 204.72500 * 16 15 14 18 18 C 1.40049 * 120.00352 * 24.72787 * 16 15 14 19 19 N 1.30770 * 119.99734 * 17.95531 * 18 16 15 20 20 Si 1.86799 * 120.00015 * 197.95774 * 18 16 15 21 21 H 1.48506 * 109.46904 * 59.99995 * 20 18 16 22 22 H 1.48497 * 109.46920 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47225 * 300.00064 * 20 18 16 24 24 C 1.40891 * 119.81462 * 359.44603 * 15 14 13 25 25 C 1.36440 * 119.86625 * 0.54929 * 24 15 14 26 26 F 1.35092 * 119.97386 * 179.70201 * 25 24 15 27 27 H 1.09003 * 109.47294 * 300.00126 * 1 2 3 28 28 H 1.08998 * 109.47240 * 60.00006 * 1 2 3 29 29 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.09376 * 0.02562 * 4 3 2 31 31 H 0.96997 * 119.99879 * 359.97438 * 7 6 5 32 32 H 0.96995 * 119.99835 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.86684 * 179.97438 * 9 5 4 34 34 H 1.08004 * 119.89973 * 179.97438 * 10 9 5 35 35 H 1.08002 * 119.92882 * 0.04320 * 13 12 11 36 36 H 1.07995 * 120.03301 * 179.97438 * 14 13 12 37 37 H 0.97003 * 119.99767 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.07103 * 180.29819 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2952 2.3714 0.0048 5 6 1.9360 3.6120 -0.0006 6 6 1.1377 4.8550 -0.0010 7 7 1.7556 6.0528 -0.0068 8 8 -0.0767 4.7975 0.0038 9 6 3.3327 3.6789 -0.0058 10 6 4.0763 2.5339 -0.0062 11 6 3.4461 1.2867 -0.0008 12 6 4.2542 0.0501 -0.0007 13 6 5.0697 -0.2511 1.0973 14 6 5.8170 -1.3896 1.1021 15 6 5.7740 -2.2641 -0.0033 16 6 6.5506 -3.4405 -0.0043 17 1 6.8426 -3.8940 -0.9400 18 6 6.9435 -4.0213 1.2080 19 7 6.3247 -3.7045 2.3156 20 14 8.3515 -5.2484 1.2428 21 1 9.5878 -4.5976 0.7394 22 1 8.5692 -5.7125 2.6364 23 1 8.0172 -6.4100 0.3801 24 6 4.9483 -1.9616 -1.1041 25 6 4.2028 -0.8189 -1.1006 26 9 3.4149 -0.5238 -2.1575 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2164 2.3191 0.0091 31 1 2.7244 6.0987 -0.0103 32 1 1.2313 6.8689 -0.0075 33 1 3.8250 4.6402 -0.0105 34 1 5.1548 2.5924 -0.0107 35 1 5.1058 0.4208 1.9421 36 1 6.4456 -1.6199 1.9495 37 1 6.5971 -4.1065 3.1553 38 1 4.9085 -2.6309 -1.9508 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222565229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:16 Heat of formation + Delta-G solvation = -101.429025 kcal Electronic energy + Delta-G solvation = -25246.325462 eV Core-core repulsion = 21353.025528 eV Total energy + Delta-G solvation = -3893.299934 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.54889 -41.47959 -40.21832 -39.24363 -38.03424 -35.70923 -34.80160 -33.22599 -31.28613 -31.14282 -30.38207 -28.24792 -27.42605 -24.77450 -23.30769 -22.67992 -22.58584 -21.53377 -19.56875 -19.53556 -18.30017 -17.71454 -17.22709 -17.09528 -16.91492 -16.80494 -16.71001 -16.34132 -16.10980 -15.77271 -15.28561 -15.18089 -14.83156 -14.61515 -14.30076 -14.14960 -13.78178 -13.50916 -13.32389 -12.86999 -12.80302 -12.60009 -12.49553 -12.32852 -12.07623 -12.03591 -11.85968 -11.42957 -11.17971 -11.03312 -10.73817 -10.01595 -9.55136 -9.31173 -8.96550 -8.73745 -6.44137 -0.30209 0.44738 0.78488 0.98103 1.40759 1.50404 1.54246 1.82040 2.18960 2.37238 2.53331 2.59556 2.84184 3.54622 3.73278 3.81362 3.88076 3.99989 4.14212 4.16843 4.31310 4.35256 4.39940 4.60735 4.66423 4.80386 4.90983 4.96897 5.07990 5.15850 5.20261 5.22159 5.41963 5.64050 5.68929 5.74984 5.88049 5.99784 6.00678 6.22133 6.39967 6.46921 6.56833 6.80024 6.88021 7.27007 8.21492 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.003233 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.575884 B = 8658.517415 C = 9033.318690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.107 3.893 4 C -0.157 4.157 5 C -0.126 4.126 6 C 0.568 3.432 7 N -0.824 5.824 8 O -0.588 6.588 9 C -0.100 4.100 10 C -0.087 4.087 11 C -0.029 4.029 12 C -0.219 4.219 13 C -0.053 4.053 14 C -0.192 4.192 15 C 0.112 3.888 16 C -0.483 4.483 17 H 0.082 0.918 18 C 0.040 3.960 19 N -0.806 5.806 20 Si 0.987 3.013 21 H -0.257 1.257 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.288 4.288 25 C 0.141 3.859 26 F -0.162 7.162 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.418 0.582 32 H 0.415 0.585 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.295 0.705 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 13.540 -0.315 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.062 3.938 4 C -0.176 4.176 5 C -0.129 4.129 6 C 0.355 3.645 7 N -0.388 5.388 8 O -0.470 6.470 9 C -0.119 4.119 10 C -0.105 4.105 11 C -0.030 4.030 12 C -0.221 4.221 13 C -0.072 4.072 14 C -0.211 4.211 15 C 0.109 3.891 16 C -0.510 4.510 17 H 0.100 0.900 18 C -0.178 4.178 19 N -0.430 5.430 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.309 4.309 25 C 0.122 3.878 26 F -0.141 7.141 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.156 0.844 31 H 0.251 0.749 32 H 0.248 0.752 33 H 0.191 0.809 34 H 0.169 0.831 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.287 13.111 -0.090 13.517 hybrid contribution 0.071 -0.559 -0.216 0.603 sum -3.217 12.552 -0.307 12.961 Atomic orbital electron populations 1.23289 0.77117 1.05131 1.01955 1.86183 1.22799 1.26889 1.88442 1.19294 0.91992 0.84584 0.97970 1.21269 1.00573 0.91029 1.04760 1.19756 0.94419 0.92394 1.06361 1.18211 0.86566 0.84899 0.74860 1.43499 1.12642 1.06876 1.75829 1.90777 1.15667 1.88173 1.52393 1.21147 0.91296 0.99887 0.99550 1.21096 1.01322 0.89743 0.98366 1.18525 0.89300 0.94109 1.01093 1.17999 1.09121 0.98108 0.96825 1.20509 0.94578 0.96443 0.95639 1.21012 1.04409 0.94975 1.00699 1.17714 0.88493 0.92471 0.90412 1.19875 1.28705 1.07967 0.94475 0.90002 1.26850 0.98220 0.98831 0.93945 1.69827 1.34931 1.37304 1.00892 0.85172 0.77699 0.77654 0.78789 1.18079 1.18860 1.18495 1.20701 1.06670 0.99803 1.03705 1.17351 0.91420 0.94954 0.84105 1.91325 1.73218 1.93619 1.55904 0.91707 0.92046 0.86924 0.84374 0.74862 0.75249 0.80894 0.83068 0.85988 0.86734 0.89372 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.33 -12.82 9.63 -91.46 -0.88 -13.70 16 3 C 0.11 3.95 6.46 22.77 0.15 4.10 16 4 C -0.16 -4.98 8.58 22.61 0.19 -4.78 16 5 C -0.13 -3.34 5.88 -20.05 -0.12 -3.45 16 6 C 0.57 13.79 8.04 86.75 0.70 14.49 16 7 N -0.82 -10.68 8.82 -175.68 -1.55 -12.23 16 8 O -0.59 -19.10 17.17 -3.94 -0.07 -19.17 16 9 C -0.10 -2.19 9.47 22.26 0.21 -1.98 16 10 C -0.09 -2.48 9.66 22.23 0.21 -2.27 16 11 C -0.03 -1.10 5.01 -19.92 -0.10 -1.20 16 12 C -0.22 -9.74 4.96 -19.84 -0.10 -9.84 16 13 C -0.05 -2.39 9.66 22.23 0.21 -2.17 16 14 C -0.19 -9.60 8.63 22.47 0.19 -9.41 16 15 C 0.11 5.92 5.57 -21.28 -0.12 5.81 16 16 C -0.48 -24.92 9.03 23.38 0.21 -24.71 16 17 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 18 C 0.04 1.88 5.13 85.29 0.44 2.31 16 19 N -0.81 -39.52 10.96 21.84 0.24 -39.28 16 20 Si 0.99 35.53 29.60 68.60 2.03 37.56 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 23 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 24 C -0.29 -14.81 9.70 22.50 0.22 -14.59 16 25 C 0.14 6.84 6.88 22.34 0.15 6.99 16 26 F -0.16 -7.64 16.58 44.97 0.75 -6.89 16 27 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 28 H 0.06 1.56 7.67 -2.39 -0.02 1.54 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.14 4.24 5.88 -2.91 -0.02 4.22 16 31 H 0.42 2.71 6.84 -92.71 -0.63 2.08 16 32 H 0.41 4.01 8.93 -92.71 -0.83 3.19 16 33 H 0.17 1.90 6.37 -2.91 -0.02 1.88 16 34 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.11 5.84 6.16 -2.91 -0.02 5.82 16 37 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 38 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -68.86 334.58 3.78 -65.09 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.31 Total: 27.66 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.57 Total: -39.05 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -1.31 Total: -51.51 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.95 Total: -32.87 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.75 Total: -6.89 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -68.86 3.78 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222565229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds