Wall clock time and date at job start Tue Mar 31 2020 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35866 * 116.99523 * 2 1 4 4 C 1.38231 * 120.05258 * 359.97438 * 3 2 1 5 5 C 1.39616 * 119.91340 * 179.97438 * 4 3 2 6 6 C 1.47729 * 119.99316 * 179.97438 * 5 4 3 7 7 N 1.34782 * 119.99655 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00125 * 0.02603 * 6 5 4 9 9 C 1.39744 * 120.00808 * 0.02562 * 5 4 3 10 10 C 1.37647 * 120.08894 * 359.97438 * 9 5 4 11 11 C 1.39468 * 120.09145 * 0.25717 * 10 9 5 12 12 C 1.48207 * 120.00561 * 179.74461 * 11 10 9 13 13 C 1.38769 * 120.02350 * 64.99624 * 12 11 10 14 14 C 1.40523 * 119.64515 * 180.02562 * 13 12 11 15 15 C 1.41354 * 120.15136 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00182 * 204.54416 * 15 14 13 17 17 C 1.39900 * 119.99696 * 24.53734 * 15 14 13 18 18 N 1.30858 * 119.99974 * 17.93588 * 17 15 14 19 19 Si 1.86803 * 119.99584 * 197.93593 * 17 15 14 20 20 H 1.48505 * 109.47131 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46728 * 120.00370 * 19 17 15 22 22 H 1.48504 * 109.47040 * 240.00107 * 19 17 15 23 23 C 1.40855 * 119.69951 * 359.97438 * 14 13 12 24 24 C 1.37566 * 120.04432 * 0.02562 * 23 14 13 25 25 C 1.38750 * 120.35434 * 359.72073 * 24 23 14 26 26 F 1.35094 * 119.84519 * 180.27890 * 25 24 23 27 27 H 1.09007 * 109.47408 * 60.00219 * 1 2 3 28 28 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47331 * 300.00047 * 1 2 3 30 30 H 1.08003 * 120.03824 * 359.96168 * 4 3 2 31 31 H 0.96997 * 119.99969 * 0.02562 * 7 6 5 32 32 H 0.96998 * 119.99392 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.95369 * 179.97438 * 9 5 4 34 34 H 1.08004 * 119.95247 * 179.97438 * 10 9 5 35 35 H 1.08005 * 120.17790 * 359.97438 * 13 12 11 36 36 H 0.97002 * 119.99409 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.98058 * 180.02562 * 23 14 13 38 38 H 1.08001 * 119.82096 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 1.2938 2.3706 -0.0005 5 6 1.9306 3.6131 0.0000 6 6 1.1288 4.8538 -0.0011 7 7 1.7434 6.0533 -0.0011 8 8 -0.0854 4.7929 -0.0021 9 6 3.3263 3.6831 0.0005 10 6 4.0752 2.5282 0.0011 11 6 3.4432 1.2850 -0.0043 12 6 4.2515 0.0427 -0.0095 13 6 5.0556 -0.2670 1.0783 14 6 5.8191 -1.4466 1.0647 15 6 6.6422 -1.7723 2.1667 16 1 7.4985 -2.4160 2.0296 17 6 6.3478 -1.2606 3.4351 18 7 5.1550 -0.7857 3.6882 19 14 7.6574 -1.2553 4.7671 20 1 8.9116 -1.8424 4.2306 21 1 7.9124 0.1406 5.2049 22 1 7.1894 -2.0594 5.9246 23 6 5.7603 -2.3032 -0.0519 24 6 4.9589 -1.9839 -1.1235 25 6 4.2002 -0.8223 -1.1101 26 9 3.4124 -0.5216 -2.1655 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2152 2.3157 -0.0016 31 1 2.7122 6.1019 -0.0008 32 1 1.2169 6.8680 -0.0015 33 1 3.8179 4.6447 0.0006 34 1 5.1537 2.5849 0.0011 35 1 5.0951 0.3955 1.9303 36 1 4.9508 -0.4313 4.5678 37 1 6.3449 -3.2112 -0.0670 38 1 4.9163 -2.6434 -1.9776 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222571781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:20 Heat of formation + Delta-G solvation = -81.809384 kcal Electronic energy + Delta-G solvation = -25592.994139 eV Core-core repulsion = 21700.544977 eV Total energy + Delta-G solvation = -3892.449162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.44121 -40.26424 -39.03101 -37.49915 -36.64872 -33.90776 -33.65943 -32.02487 -29.98123 -29.40473 -28.55166 -27.03768 -25.12613 -23.98000 -21.98975 -21.24554 -20.88482 -20.06887 -18.46804 -17.44538 -17.27160 -16.20807 -16.08460 -15.65700 -15.52675 -15.38691 -15.13202 -14.66739 -14.49540 -14.16681 -14.06903 -13.79794 -13.44210 -13.07691 -12.79935 -12.36833 -12.08911 -11.93945 -11.85203 -11.48201 -11.34623 -11.13748 -11.01424 -10.88633 -10.83251 -10.36280 -10.11130 -9.99791 -9.82540 -9.58575 -9.23345 -8.71508 -8.05554 -7.51434 -7.32714 -6.87533 -4.44977 0.94830 1.64936 2.50852 2.71631 2.98259 3.02145 3.05910 3.08738 3.42026 3.62820 3.85003 4.04259 4.41443 4.77551 5.03363 5.09576 5.23043 5.32723 5.39893 5.45483 5.57549 5.70634 5.78202 5.87509 6.00490 6.06955 6.31809 6.40510 6.58573 6.64228 6.66991 6.85352 6.93220 7.01242 7.10953 7.23760 7.31611 7.60351 7.71731 7.71884 7.88862 8.08717 8.17628 8.43422 8.73248 8.76851 10.06686 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.004474 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.872103 B = 6256.482659 C = 7337.078556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.136 3.864 4 C -0.152 4.152 5 C -0.120 4.120 6 C 0.569 3.431 7 N -0.852 5.852 8 O -0.547 6.547 9 C -0.123 4.123 10 C -0.082 4.082 11 C -0.011 4.011 12 C -0.069 4.069 13 C -0.119 4.119 14 C 0.100 3.900 15 C -0.457 4.457 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.789 5.789 19 Si 0.908 3.092 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.198 4.198 24 C -0.121 4.121 25 C -0.014 4.014 26 F -0.167 7.167 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.138 0.862 31 H 0.402 0.598 32 H 0.402 0.598 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.282 0.718 37 H 0.102 0.898 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 8.869 -3.413 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.090 3.910 4 C -0.172 4.172 5 C -0.124 4.124 6 C 0.356 3.644 7 N -0.416 5.416 8 O -0.426 6.426 9 C -0.142 4.142 10 C -0.100 4.100 11 C -0.012 4.012 12 C -0.070 4.070 13 C -0.138 4.138 14 C 0.097 3.903 15 C -0.486 4.486 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.218 4.218 24 C -0.140 4.140 25 C -0.034 4.034 26 F -0.146 7.146 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.232 0.768 32 H 0.233 0.767 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.889 8.545 -3.249 9.935 hybrid contribution 0.346 0.527 0.564 0.846 sum -3.543 9.073 -2.685 10.104 Atomic orbital electron populations 1.23062 0.79123 1.03817 1.00994 1.86272 1.20496 1.25721 1.87935 1.18931 0.91574 0.84311 0.96217 1.21149 1.00479 0.90719 1.04839 1.19462 0.93388 0.92524 1.06981 1.18306 0.87239 0.84027 0.74825 1.43742 1.11624 1.07947 1.78320 1.90782 1.14028 1.87585 1.50162 1.20976 0.92204 0.98432 1.02561 1.21021 1.00325 0.90159 0.98458 1.18497 0.89549 0.94196 0.98961 1.18275 1.00145 0.93226 0.95341 1.21305 0.98528 0.97929 0.96071 1.17551 0.90892 0.89854 0.91975 1.19582 1.10698 1.26560 0.91793 0.90021 1.25929 0.95474 0.92862 1.00045 1.69833 1.19035 1.29243 1.23243 0.86265 0.81612 0.78944 0.79998 1.18284 1.19622 1.19928 1.20892 1.04549 1.00364 0.95996 1.20444 0.98880 0.95603 0.99101 1.17182 1.00884 0.98876 0.86488 1.91289 1.73738 1.93714 1.55891 0.92908 0.88313 0.92811 0.84397 0.76806 0.76735 0.85791 0.84489 0.85286 0.90668 0.87942 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.29 -5.75 9.65 -19.32 -0.19 -5.94 16 3 C 0.14 2.63 6.47 -38.94 -0.25 2.38 16 4 C -0.15 -2.60 8.57 -39.07 -0.33 -2.94 16 5 C -0.12 -1.84 5.87 -104.94 -0.62 -2.46 16 6 C 0.57 8.07 8.04 -12.38 -0.10 7.97 16 7 N -0.85 -7.82 8.82 30.50 0.27 -7.55 16 8 O -0.55 -9.61 17.17 5.31 0.09 -9.51 16 9 C -0.12 -1.69 9.52 -39.23 -0.37 -2.07 16 10 C -0.08 -1.36 9.70 -39.34 -0.38 -1.74 16 11 C -0.01 -0.22 5.01 -104.70 -0.52 -0.75 16 12 C -0.07 -1.59 4.93 -104.92 -0.52 -2.10 16 13 C -0.12 -2.93 8.36 -38.52 -0.32 -3.25 16 14 C 0.10 2.51 5.57 -106.86 -0.60 1.91 16 15 C -0.46 -11.37 9.04 -37.78 -0.34 -11.72 16 16 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 17 C 0.08 1.78 5.13 -17.34 -0.09 1.70 16 18 N -0.79 -19.47 10.96 55.54 0.61 -18.87 16 19 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.20 -4.63 9.78 -38.84 -0.38 -5.01 16 24 C -0.12 -2.72 9.99 -39.64 -0.40 -3.12 16 25 C -0.01 -0.34 6.97 -38.70 -0.27 -0.61 16 26 F -0.17 -3.81 16.61 2.25 0.04 -3.78 16 27 H 0.05 0.68 7.66 -51.92 -0.40 0.28 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 30 H 0.14 2.22 5.86 -52.48 -0.31 1.91 16 31 H 0.40 2.64 6.84 -40.82 -0.28 2.36 16 32 H 0.40 2.95 8.93 -40.82 -0.36 2.59 16 33 H 0.12 1.17 6.38 -52.49 -0.33 0.83 16 34 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.13 3.26 6.16 -52.48 -0.32 2.93 16 36 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 37 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 38 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -30.80 334.91 -7.31 -38.11 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.65 Total: 10.31 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -4.50 Total: -20.44 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.88 Total: -26.41 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.10 Total: -15.46 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.80 -7.31 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222571781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.702 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds