Wall clock time and date at job start Tue Mar 31 2020 11:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35866 * 116.99523 * 2 1 4 4 C 1.38231 * 120.05258 * 359.97438 * 3 2 1 5 5 C 1.39616 * 119.91340 * 179.97438 * 4 3 2 6 6 C 1.47729 * 119.99316 * 179.97438 * 5 4 3 7 7 N 1.34782 * 119.99655 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00125 * 0.02603 * 6 5 4 9 9 C 1.39744 * 120.00808 * 0.02562 * 5 4 3 10 10 C 1.37647 * 120.08894 * 359.97438 * 9 5 4 11 11 C 1.39468 * 120.09145 * 0.25717 * 10 9 5 12 12 C 1.48207 * 120.00561 * 179.74461 * 11 10 9 13 13 C 1.38769 * 120.02350 * 64.99624 * 12 11 10 14 14 C 1.40523 * 119.64515 * 180.02562 * 13 12 11 15 15 C 1.41354 * 120.15136 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00182 * 204.54416 * 15 14 13 17 17 C 1.39900 * 119.99696 * 24.53734 * 15 14 13 18 18 N 1.30858 * 119.99974 * 17.93588 * 17 15 14 19 19 Si 1.86803 * 119.99584 * 197.93593 * 17 15 14 20 20 H 1.48505 * 109.47131 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46728 * 120.00370 * 19 17 15 22 22 H 1.48504 * 109.47040 * 240.00107 * 19 17 15 23 23 C 1.40855 * 119.69951 * 359.97438 * 14 13 12 24 24 C 1.37566 * 120.04432 * 0.02562 * 23 14 13 25 25 C 1.38750 * 120.35434 * 359.72073 * 24 23 14 26 26 F 1.35094 * 119.84519 * 180.27890 * 25 24 23 27 27 H 1.09007 * 109.47408 * 60.00219 * 1 2 3 28 28 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47331 * 300.00047 * 1 2 3 30 30 H 1.08003 * 120.03824 * 359.96168 * 4 3 2 31 31 H 0.96997 * 119.99969 * 0.02562 * 7 6 5 32 32 H 0.96998 * 119.99392 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.95369 * 179.97438 * 9 5 4 34 34 H 1.08004 * 119.95247 * 179.97438 * 10 9 5 35 35 H 1.08005 * 120.17790 * 359.97438 * 13 12 11 36 36 H 0.97002 * 119.99409 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.98058 * 180.02562 * 23 14 13 38 38 H 1.08001 * 119.82096 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 1.2938 2.3706 -0.0005 5 6 1.9306 3.6131 0.0000 6 6 1.1288 4.8538 -0.0011 7 7 1.7434 6.0533 -0.0011 8 8 -0.0854 4.7929 -0.0021 9 6 3.3263 3.6831 0.0005 10 6 4.0752 2.5282 0.0011 11 6 3.4432 1.2850 -0.0043 12 6 4.2515 0.0427 -0.0095 13 6 5.0556 -0.2670 1.0783 14 6 5.8191 -1.4466 1.0647 15 6 6.6422 -1.7723 2.1667 16 1 7.4985 -2.4160 2.0296 17 6 6.3478 -1.2606 3.4351 18 7 5.1550 -0.7857 3.6882 19 14 7.6574 -1.2553 4.7671 20 1 8.9116 -1.8424 4.2306 21 1 7.9124 0.1406 5.2049 22 1 7.1894 -2.0594 5.9246 23 6 5.7603 -2.3032 -0.0519 24 6 4.9589 -1.9839 -1.1235 25 6 4.2002 -0.8223 -1.1101 26 9 3.4124 -0.5216 -2.1655 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2152 2.3157 -0.0016 31 1 2.7122 6.1019 -0.0008 32 1 1.2169 6.8680 -0.0015 33 1 3.8179 4.6447 0.0006 34 1 5.1537 2.5849 0.0011 35 1 5.0951 0.3955 1.9303 36 1 4.9508 -0.4313 4.5678 37 1 6.3449 -3.2112 -0.0670 38 1 4.9163 -2.6434 -1.9776 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222571781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:19 Heat of formation + Delta-G solvation = -101.201235 kcal Electronic energy + Delta-G solvation = -25593.835033 eV Core-core repulsion = 21700.544977 eV Total energy + Delta-G solvation = -3893.290056 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.25190 -41.53094 -40.25908 -39.19159 -38.01937 -35.52706 -34.86318 -33.49712 -31.33827 -31.16818 -30.07855 -28.23423 -26.95442 -25.35879 -23.38362 -22.81276 -22.41425 -21.50127 -19.69242 -19.11149 -18.33895 -17.99389 -17.33101 -17.22203 -16.87140 -16.80502 -16.61489 -16.18476 -15.91741 -15.80086 -15.29038 -15.22225 -14.78821 -14.60975 -14.36492 -13.88184 -13.76102 -13.48131 -13.35960 -13.04283 -12.77436 -12.71338 -12.49851 -12.35371 -12.10644 -12.05933 -11.71344 -11.43226 -11.19024 -11.00674 -10.76337 -10.09469 -9.53461 -9.27609 -9.01428 -8.65614 -6.33859 -0.35573 0.36771 0.76837 0.92576 1.42601 1.48479 1.57746 1.77257 2.22330 2.32483 2.49091 2.61638 2.78067 3.56372 3.62838 3.81019 3.92182 3.98231 4.07282 4.10971 4.30190 4.31620 4.35442 4.53250 4.62805 4.72299 4.89074 5.02856 5.07271 5.12218 5.16432 5.26695 5.34994 5.54185 5.64943 5.78509 5.85171 5.89178 6.03619 6.26057 6.36214 6.40351 6.59386 6.88622 6.92323 7.23817 8.30735 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.004474 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.872103 B = 6256.482659 C = 7337.078556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.119 3.881 4 C -0.159 4.159 5 C -0.119 4.119 6 C 0.570 3.430 7 N -0.823 5.823 8 O -0.585 6.585 9 C -0.102 4.102 10 C -0.084 4.084 11 C -0.055 4.055 12 C -0.061 4.061 13 C -0.139 4.139 14 C 0.075 3.925 15 C -0.487 4.487 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.255 1.255 21 H -0.263 1.263 22 H -0.270 1.270 23 C -0.211 4.211 24 C -0.120 4.120 25 C -0.032 4.032 26 F -0.166 7.166 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.143 0.857 31 H 0.418 0.582 32 H 0.416 0.584 33 H 0.177 0.823 34 H 0.148 0.852 35 H 0.116 0.884 36 H 0.289 0.711 37 H 0.116 0.884 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 10.909 -3.152 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.074 3.926 4 C -0.179 4.179 5 C -0.122 4.122 6 C 0.356 3.644 7 N -0.388 5.388 8 O -0.467 6.467 9 C -0.120 4.120 10 C -0.102 4.102 11 C -0.056 4.056 12 C -0.062 4.062 13 C -0.159 4.159 14 C 0.073 3.927 15 C -0.516 4.516 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.802 3.198 20 H -0.178 1.178 21 H -0.188 1.188 22 H -0.195 1.195 23 C -0.230 4.230 24 C -0.139 4.139 25 C -0.052 4.052 26 F -0.146 7.146 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.251 0.749 32 H 0.249 0.751 33 H 0.194 0.806 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.263 10.622 -3.008 11.512 hybrid contribution 0.073 -0.027 0.417 0.424 sum -3.190 10.596 -2.592 11.365 Atomic orbital electron populations 1.23318 0.76912 1.05327 1.01977 1.86201 1.23014 1.26623 1.88280 1.19055 0.91520 0.84892 0.97167 1.21260 1.00736 0.90896 1.04989 1.19767 0.94297 0.92612 1.05532 1.18143 0.86554 0.84790 0.74930 1.43492 1.12677 1.06841 1.75757 1.90776 1.15549 1.88105 1.52265 1.21400 0.91397 0.99605 0.99647 1.21250 1.01167 0.89888 0.97916 1.18675 0.90057 0.94404 1.02426 1.18492 0.99108 0.94216 0.94351 1.21209 1.00183 0.98092 0.96401 1.17928 0.91415 0.90487 0.92889 1.19855 1.11185 1.27806 0.92706 0.89786 1.26757 0.97285 0.91812 1.01887 1.69899 1.20778 1.29721 1.24216 0.85167 0.78639 0.79218 0.76795 1.17823 1.18771 1.19452 1.21082 1.05194 1.00823 0.95934 1.20716 0.97953 0.95632 0.99593 1.17435 1.01356 0.99543 0.86861 1.91276 1.73784 1.93768 1.55753 0.91718 0.86622 0.91954 0.83942 0.74864 0.75132 0.80600 0.83422 0.86600 0.90002 0.86561 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.33 -13.31 9.65 -92.04 -0.89 -14.20 16 3 C 0.12 4.71 6.47 22.68 0.15 4.86 16 4 C -0.16 -5.38 8.57 22.60 0.19 -5.19 16 5 C -0.12 -3.39 5.87 -20.07 -0.12 -3.51 16 6 C 0.57 14.64 8.04 86.75 0.70 15.34 16 7 N -0.82 -11.79 8.82 -175.67 -1.55 -13.34 16 8 O -0.59 -19.62 17.17 -3.93 -0.07 -19.69 16 9 C -0.10 -2.51 9.52 22.49 0.21 -2.30 16 10 C -0.08 -2.73 9.70 22.43 0.22 -2.51 16 11 C -0.05 -2.25 5.01 -19.92 -0.10 -2.35 16 12 C -0.06 -2.88 4.93 -20.06 -0.10 -2.98 16 13 C -0.14 -7.11 8.36 22.95 0.19 -6.92 16 14 C 0.08 3.91 5.57 -21.32 -0.12 3.79 16 15 C -0.49 -24.77 9.04 23.44 0.21 -24.56 16 16 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 17 C 0.04 1.83 5.13 85.24 0.44 2.27 16 18 N -0.82 -41.41 10.96 21.82 0.24 -41.17 16 19 Si 0.98 36.01 29.60 68.60 2.03 38.04 16 20 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.21 -10.04 9.78 22.75 0.22 -9.81 16 24 C -0.12 -5.44 9.99 22.23 0.22 -5.22 16 25 C -0.03 -1.53 6.97 22.84 0.16 -1.37 16 26 F -0.17 -7.70 16.61 44.97 0.75 -6.96 16 27 H 0.06 1.67 7.66 -2.38 -0.02 1.65 16 28 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.06 1.65 7.66 -2.39 -0.02 1.63 16 30 H 0.14 4.57 5.86 -2.91 -0.02 4.55 16 31 H 0.42 3.37 6.84 -92.71 -0.63 2.73 16 32 H 0.42 4.47 8.93 -92.71 -0.83 3.64 16 33 H 0.18 2.37 6.38 -2.91 -0.02 2.36 16 34 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.12 6.12 6.16 -2.91 -0.02 6.10 16 36 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 37 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 38 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -69.51 334.91 3.79 -65.72 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.31 Total: 30.41 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.59 Total: -38.81 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -1.31 Total: -54.51 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.96 Total: -33.89 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.75 Total: -6.96 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -69.51 3.79 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222571781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.482 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds