Wall clock time and date at job start Tue Mar 31 2020 11:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35816 * 116.99841 * 2 1 4 4 C 1.38245 * 120.13265 * 359.97438 * 3 2 1 5 5 C 1.39646 * 119.81261 * 179.77284 * 4 3 2 6 6 C 1.47722 * 119.96941 * 180.25090 * 5 4 3 7 7 N 1.34769 * 120.00023 * 180.25259 * 6 5 4 8 8 O 1.21577 * 119.99339 * 0.25778 * 6 5 4 9 9 C 1.39825 * 120.06736 * 0.50779 * 5 4 3 10 10 C 1.36522 * 120.25820 * 359.49088 * 9 5 4 11 11 C 1.39770 * 120.19344 * 0.25314 * 10 9 5 12 12 C 1.47648 * 120.04027 * 180.02562 * 11 10 9 13 13 C 1.39181 * 120.27587 * 65.00115 * 12 11 10 14 14 C 1.38085 * 120.17232 * 179.97438 * 13 12 11 15 15 C 1.38841 * 120.73289 * 359.97438 * 14 13 12 16 16 C 1.37722 * 120.54583 * 0.04441 * 15 14 13 17 17 F 1.35106 * 120.09573 * 179.97438 * 16 15 14 18 18 C 1.41058 * 119.80409 * 359.70455 * 16 15 14 19 19 C 1.40705 * 120.35577 * 180.29887 * 18 16 15 20 20 H 1.07995 * 119.99916 * 216.64091 * 19 18 16 21 21 C 1.40138 * 119.99927 * 36.62947 * 19 18 16 22 22 N 1.30748 * 120.00332 * 19.69802 * 21 19 18 23 23 Si 1.86796 * 119.99762 * 199.69337 * 21 19 18 24 24 H 1.48492 * 109.47494 * 60.00539 * 23 21 19 25 25 H 1.48504 * 109.46885 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47436 * 300.00158 * 23 21 19 27 27 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47115 * 300.00633 * 1 2 3 29 29 H 1.08997 * 109.47166 * 60.00130 * 1 2 3 30 30 H 1.08004 * 120.09472 * 0.02562 * 4 3 2 31 31 H 0.97000 * 120.00267 * 0.02562 * 7 6 5 32 32 H 0.97007 * 119.99513 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.87076 * 179.77255 * 9 5 4 34 34 H 1.08005 * 119.90538 * 180.27843 * 10 9 5 35 35 H 1.08004 * 119.90957 * 359.97438 * 13 12 11 36 36 H 1.08001 * 119.63130 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.72867 * 180.02562 * 15 14 13 38 38 H 0.96992 * 120.00813 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2953 2.3713 -0.0005 5 6 1.9362 3.6120 0.0043 6 6 1.1378 4.8549 0.0093 7 7 1.7557 6.0526 0.0088 8 8 -0.0766 4.7972 0.0140 9 6 3.3328 3.6791 -0.0011 10 6 4.0765 2.5343 -0.0006 11 6 3.4464 1.2867 0.0000 12 6 4.2540 0.0507 0.0011 13 6 5.0627 -0.2582 1.0910 14 6 5.8167 -1.4150 1.0900 15 6 5.7806 -2.2845 0.0082 16 6 4.9912 -2.0081 -1.0860 17 9 4.9634 -2.8604 -2.1339 18 6 4.2076 -0.8355 -1.1068 19 6 3.3921 -0.5448 -2.2161 20 1 3.2727 0.4767 -2.5455 21 6 2.7352 -1.5809 -2.8934 22 7 2.5527 -2.7342 -2.3050 23 14 2.1200 -1.3143 -4.6369 24 1 3.2655 -0.9783 -5.5200 25 1 1.4648 -2.5541 -5.1256 26 1 1.1402 -0.1986 -4.6510 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2165 2.3190 -0.0005 31 1 2.7246 6.0986 0.0048 32 1 1.2313 6.8688 0.0125 33 1 3.8251 4.6403 -0.0011 34 1 5.1550 2.5927 -0.0002 35 1 5.1004 0.4087 1.9397 36 1 6.4415 -1.6458 1.9401 37 1 6.3767 -3.1850 0.0248 38 1 2.0976 -3.4512 -2.7736 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222580942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:46 Heat of formation + Delta-G solvation = -90.847956 kcal Electronic energy + Delta-G solvation = -26209.428269 eV Core-core repulsion = 22316.587165 eV Total energy + Delta-G solvation = -3892.841104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.89452 -41.40225 -40.16179 -38.95831 -37.78358 -35.46253 -34.79295 -33.23016 -31.51561 -30.97787 -29.84743 -28.10223 -27.13277 -25.15403 -23.11169 -22.56757 -22.38260 -21.32633 -19.48166 -19.22075 -18.21317 -17.80452 -17.18960 -17.11792 -16.68633 -16.54839 -16.15258 -16.00520 -15.84563 -15.71930 -15.62012 -15.11441 -14.74038 -14.52719 -14.26370 -13.87809 -13.43886 -13.28371 -13.10495 -13.04466 -12.88760 -12.57816 -12.38554 -12.22991 -12.12784 -11.90095 -11.86544 -11.32306 -11.07158 -10.89694 -10.70639 -9.88413 -9.33915 -9.05022 -8.81272 -8.62249 -6.28165 -0.18718 0.59220 0.86149 0.99389 1.32816 1.40944 1.45815 1.90125 2.19340 2.50849 2.64104 2.77197 2.95550 3.52215 3.83570 3.97236 4.07651 4.19569 4.24157 4.29827 4.36279 4.39574 4.51503 4.64246 4.68353 4.81997 4.89939 4.95573 5.18425 5.27863 5.31569 5.38342 5.50378 5.72470 5.76446 5.85801 5.93206 6.03022 6.07201 6.33203 6.44746 6.53251 6.69573 6.90952 7.01775 7.31353 8.37221 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.005560 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.289547 B = 5034.674743 C = 6117.294355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.123 3.877 4 C -0.168 4.168 5 C -0.130 4.130 6 C 0.568 3.432 7 N -0.824 5.824 8 O -0.592 6.592 9 C -0.105 4.105 10 C -0.092 4.092 11 C -0.018 4.018 12 C -0.148 4.148 13 C -0.085 4.085 14 C -0.206 4.206 15 C -0.140 4.140 16 C -0.004 4.004 17 F -0.161 7.161 18 C 0.088 3.912 19 C -0.466 4.466 20 H 0.068 0.932 21 C 0.052 3.948 22 N -0.801 5.801 23 Si 0.952 3.048 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.263 1.263 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.130 0.870 31 H 0.419 0.581 32 H 0.414 0.586 33 H 0.172 0.828 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 12.530 4.680 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.077 3.923 4 C -0.188 4.188 5 C -0.133 4.133 6 C 0.354 3.646 7 N -0.388 5.388 8 O -0.474 6.474 9 C -0.123 4.123 10 C -0.110 4.110 11 C -0.019 4.019 12 C -0.149 4.149 13 C -0.103 4.103 14 C -0.225 4.225 15 C -0.159 4.159 16 C -0.025 4.025 17 F -0.140 7.140 18 C 0.085 3.915 19 C -0.494 4.494 20 H 0.087 0.913 21 C -0.166 4.166 22 N -0.425 5.425 23 Si 0.774 3.226 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.187 1.187 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.252 0.748 32 H 0.246 0.754 33 H 0.189 0.811 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.718 11.861 4.618 12.748 hybrid contribution -0.625 -0.414 -1.151 1.374 sum 0.093 11.447 3.466 11.961 Atomic orbital electron populations 1.23116 0.78540 1.04110 1.01206 1.86351 1.21371 1.26393 1.87735 1.19284 0.92157 0.84376 0.96499 1.21243 1.00274 0.91418 1.05822 1.19692 0.94496 0.92148 1.06967 1.18267 0.86568 0.84997 0.74728 1.43479 1.12601 1.06795 1.75975 1.90769 1.15828 1.88232 1.52535 1.21076 0.91159 0.99858 1.00206 1.21052 1.01169 0.89718 0.99035 1.18506 0.89369 0.94084 0.99897 1.18556 1.03686 0.97701 0.95002 1.20982 0.95576 0.97046 0.96720 1.20484 1.06265 0.96756 0.99042 1.20942 1.00387 1.00669 0.93891 1.18226 1.03436 0.93396 0.87411 1.91266 1.95652 1.69940 1.57105 1.17685 0.90872 0.89931 0.92980 1.19106 1.25019 0.94181 1.11131 0.91346 1.26341 0.94625 0.93890 1.01764 1.69779 1.30256 1.04299 1.38181 0.85700 0.79123 0.78801 0.78993 1.18775 1.19367 1.18726 0.88187 0.91652 0.93210 0.85206 0.74845 0.75358 0.81105 0.82999 0.85374 0.84745 0.86637 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 1.99 16 2 O -0.31 -13.60 9.01 -91.49 -0.82 -14.42 16 3 C 0.12 5.01 6.11 22.77 0.14 5.15 16 4 C -0.17 -6.01 8.58 22.61 0.19 -5.82 16 5 C -0.13 -3.83 5.88 -20.05 -0.12 -3.95 16 6 C 0.57 15.41 8.04 86.75 0.70 16.11 16 7 N -0.82 -12.51 8.82 -175.69 -1.55 -14.06 16 8 O -0.59 -21.09 17.17 -3.96 -0.07 -21.16 16 9 C -0.10 -2.51 9.47 22.25 0.21 -2.30 16 10 C -0.09 -2.75 9.66 22.24 0.21 -2.53 16 11 C -0.02 -0.70 4.51 -19.92 -0.09 -0.79 16 12 C -0.15 -6.67 4.98 -19.65 -0.10 -6.76 16 13 C -0.09 -3.38 9.71 22.46 0.22 -3.16 16 14 C -0.21 -8.14 10.02 22.38 0.22 -7.92 16 15 C -0.14 -6.31 9.99 22.29 0.22 -6.08 16 16 C 0.00 -0.24 6.68 22.84 0.15 -0.08 16 17 F -0.16 -8.95 14.26 44.97 0.64 -8.31 16 18 C 0.09 4.61 5.23 -21.07 -0.11 4.50 16 19 C -0.47 -24.77 6.97 23.33 0.16 -24.61 16 20 H 0.07 3.64 7.58 -2.91 -0.02 3.61 16 21 C 0.05 2.68 4.52 85.32 0.39 3.07 16 22 N -0.80 -43.40 11.10 21.86 0.24 -43.16 16 23 Si 0.95 40.48 29.60 68.60 2.03 42.52 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 27 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.06 1.94 7.66 -2.38 -0.02 1.92 16 29 H 0.05 1.67 7.66 -2.39 -0.02 1.65 16 30 H 0.13 4.64 5.88 -2.91 -0.02 4.62 16 31 H 0.42 3.52 6.84 -92.71 -0.63 2.89 16 32 H 0.41 4.86 8.93 -92.70 -0.83 4.03 16 33 H 0.17 2.20 6.37 -2.91 -0.02 2.19 16 34 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 35 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.28 14.30 8.29 -92.71 -0.77 13.53 16 Total: -1.00 -71.66 331.05 3.67 -67.98 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.32 Total: 23.79 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.52 Total: -33.19 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -1.31 Total: -57.21 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.89 Total: -35.58 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.64 Total: -8.31 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.52 kcal Total: -71.66 3.67 -67.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222580942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds