Wall clock time and date at job start Tue Mar 31 2020 11:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47303 * 2 1 4 4 C 1.46901 * 111.00390 * 287.95305 * 3 2 1 5 5 C 1.50694 * 109.47859 * 160.36005 * 4 3 2 6 6 H 1.08002 * 119.99558 * 4.66705 * 5 4 3 7 7 C 1.37869 * 120.00276 * 184.67501 * 5 4 3 8 8 N 1.31507 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00076 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47362 * 59.99374 * 9 7 5 11 11 H 1.48503 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46800 * 299.99461 * 9 7 5 13 13 C 1.46900 * 111.00371 * 163.99865 * 3 2 1 14 14 C 1.50710 * 109.46700 * 293.95486 * 13 3 2 15 15 C 1.38213 * 120.01145 * 105.00043 * 14 13 3 16 16 C 1.38224 * 120.02361 * 179.74451 * 15 14 13 17 17 C 1.38263 * 120.05118 * 0.25098 * 16 15 14 18 18 S 1.76200 * 119.98720 * 180.02562 * 17 16 15 19 19 C 1.81398 * 104.44994 * 89.99842 * 18 17 16 20 20 O 1.42095 * 104.27796 * 206.07022 * 18 17 16 21 21 O 1.42097 * 104.27836 * 333.92926 * 18 17 16 22 22 C 1.38169 * 120.02854 * 0.02562 * 17 16 15 23 23 C 1.38438 * 120.01245 * 285.24780 * 14 13 3 24 24 F 1.35098 * 120.02785 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47535 * 59.29082 * 1 2 3 26 26 H 1.09001 * 109.47450 * 179.29984 * 1 2 3 27 27 H 1.09005 * 109.47141 * 299.29226 * 1 2 3 28 28 H 1.09000 * 109.47053 * 239.99583 * 2 1 3 29 29 H 1.09000 * 109.46894 * 120.00156 * 2 1 3 30 30 H 1.09004 * 109.47105 * 280.36494 * 4 3 2 31 31 H 1.09007 * 109.46771 * 40.35821 * 4 3 2 32 32 H 0.97006 * 120.00470 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47431 * 173.95581 * 13 3 2 34 34 H 1.08992 * 109.47071 * 53.94793 * 13 3 2 35 35 H 1.08005 * 119.99052 * 0.02562 * 15 14 13 36 36 H 1.08003 * 119.97156 * 180.27146 * 16 15 14 37 37 H 1.09000 * 109.47021 * 60.00533 * 19 18 17 38 38 H 1.09001 * 109.47381 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47479 * 299.99856 * 19 18 17 40 40 H 1.07995 * 120.01863 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7967 2.0222 -1.3046 5 6 1.8479 3.5201 -1.1475 6 1 2.1025 3.9543 -0.1919 7 6 1.5697 4.3361 -2.2233 8 7 1.2600 3.8073 -3.3869 9 14 1.6339 6.1928 -2.0286 10 1 3.0003 6.6001 -1.6133 11 1 1.2974 6.8383 -3.3230 12 1 0.6555 6.6162 -0.9948 13 6 3.4381 1.4419 0.3780 14 6 3.5934 1.0066 1.8125 15 6 4.1070 -0.2430 2.1041 16 6 4.2545 -0.6404 3.4197 17 6 3.8837 0.2094 4.4454 18 16 4.0731 -0.2987 6.1219 19 6 5.7416 0.2499 6.5754 20 8 3.0930 0.4499 6.8278 21 8 4.0124 -1.7173 6.0672 22 6 3.3648 1.4568 4.1563 23 6 3.2170 1.8563 2.8386 24 9 2.7097 3.0758 2.5547 25 1 -0.3634 0.5248 -0.8835 26 1 -0.3634 -1.0276 -0.0126 27 1 -0.3634 0.5028 0.8963 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.5714 1.7033 -2.0020 31 1 0.8193 1.7305 -1.6892 32 1 1.0638 4.3814 -4.1439 33 1 3.8031 2.4628 0.2666 34 1 4.0130 0.7779 -0.2673 35 1 4.3974 -0.9075 1.3037 36 1 4.6600 -1.6154 3.6466 37 1 5.8098 1.3325 6.4682 38 1 5.9462 -0.0258 7.6099 39 1 6.4713 -0.2267 5.9209 40 1 3.0748 2.1203 4.9576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236929855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:00 Heat of formation + Delta-G solvation = -108.105382 kcal Electronic energy + Delta-G solvation = -24410.646314 eV Core-core repulsion = 20652.500824 eV Total energy + Delta-G solvation = -3758.145491 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.109 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.83132 -40.44827 -38.42388 -38.11360 -36.94915 -34.83842 -33.44358 -31.80333 -31.37197 -30.24034 -28.96450 -26.64058 -24.54364 -23.97803 -23.19307 -21.39636 -20.17038 -18.98754 -18.61866 -17.77673 -17.17416 -17.13825 -16.97108 -16.75205 -16.49653 -16.40509 -15.84309 -15.39514 -15.27747 -14.86449 -14.52449 -14.18898 -13.99075 -13.90230 -13.79379 -13.53070 -13.34713 -13.11063 -13.05999 -12.98545 -12.93450 -12.72701 -12.63196 -12.54865 -12.30348 -12.15130 -11.98911 -11.68095 -11.49060 -11.32673 -10.61156 -10.29691 -9.82672 -9.07054 -8.20886 -6.29766 -0.85625 -0.36381 0.08567 1.37905 1.40814 1.48932 1.88778 2.20465 2.39163 3.04598 3.08957 3.10155 3.27925 3.41305 3.59114 3.68039 3.96144 4.13102 4.16512 4.17870 4.29474 4.34468 4.45568 4.50307 4.61950 4.69477 4.83485 4.88565 4.94570 4.98191 5.02456 5.03556 5.15062 5.22506 5.25910 5.33931 5.65811 5.73596 6.06412 6.30830 6.58257 6.84825 7.39175 8.89227 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.021406 B = 0.003499 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.742604 B = 8000.347423 C = 8680.720756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.047 3.953 3 N -0.540 5.540 4 C 0.209 3.791 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.095 3.905 14 C -0.065 4.065 15 C -0.107 4.107 16 C -0.031 4.031 17 C -0.637 4.637 18 S 2.515 3.485 19 C -0.622 4.622 20 O -0.977 6.977 21 O -0.966 6.966 22 C -0.068 4.068 23 C 0.076 3.924 24 F -0.144 7.144 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.082 0.918 30 H -0.034 1.034 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -10.739 19.009 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 N -0.265 5.265 4 C 0.083 3.917 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.199 1.199 13 C -0.033 4.033 14 C -0.066 4.066 15 C -0.126 4.126 16 C -0.050 4.050 17 C -0.721 4.721 18 S 2.696 3.304 19 C -0.776 4.776 20 O -0.975 6.975 21 O -0.963 6.963 22 C -0.088 4.088 23 C 0.056 3.944 24 F -0.123 7.123 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.101 0.899 30 H -0.016 1.016 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.321 -10.812 19.598 25.083 hybrid contribution 0.328 1.522 -1.941 2.488 sum 11.649 -9.290 17.657 23.104 Atomic orbital electron populations 1.21705 0.95042 1.01698 1.01168 1.22154 0.96578 0.89084 1.00286 1.62083 1.15896 1.16501 1.32031 1.19416 0.94460 0.93691 0.84093 1.21413 1.46188 0.92071 0.96120 0.92614 1.25799 0.94940 1.03700 0.94800 1.70053 1.48467 1.37069 1.01751 0.85553 0.78906 0.79538 0.77327 1.19331 1.20523 1.19859 1.20908 0.90171 1.01350 0.90852 1.20397 0.96525 0.94953 0.94744 1.21390 0.98759 0.93935 0.98512 1.21301 0.93540 0.99185 0.90937 1.30756 1.13865 1.02233 1.25263 1.04830 0.79104 0.73786 0.72661 1.30028 1.18443 1.14879 1.14277 1.93549 1.58869 1.73520 1.71543 1.93547 1.87847 1.29122 1.85790 1.20985 0.96386 0.96301 0.95094 1.17931 1.00235 0.82044 0.94226 1.91529 1.84855 1.41362 1.94536 0.94646 0.90115 0.93243 0.95441 0.89929 1.01599 0.96607 0.92685 0.91314 0.92984 0.82107 0.80422 0.83166 0.82502 0.82289 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.99 71.98 0.72 -4.15 16 2 C 0.05 1.67 5.55 86.31 0.48 2.15 16 3 N -0.54 -23.53 4.37 -905.37 -3.96 -27.49 16 4 C 0.21 11.17 4.59 85.56 0.39 11.56 16 5 C -0.52 -30.11 8.61 25.60 0.22 -29.89 16 6 H 0.06 3.26 7.66 -2.91 -0.02 3.24 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.46 13.29 21.44 0.28 -56.18 16 9 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.09 3.57 4.60 85.56 0.39 3.96 16 14 C -0.06 -1.97 4.48 -19.82 -0.09 -2.06 16 15 C -0.11 -2.34 8.67 22.26 0.19 -2.14 16 16 C -0.03 -0.55 9.47 22.27 0.21 -0.34 16 17 C -0.64 -12.14 5.66 22.26 0.13 -12.01 16 18 S 2.51 35.74 5.80 -56.49 -0.33 35.42 16 19 C -0.62 -1.89 10.80 113.37 1.22 -0.66 16 20 O -0.98 -22.09 17.12 -127.65 -2.19 -24.28 16 21 O -0.97 -19.04 17.12 -127.65 -2.19 -21.22 16 22 C -0.07 -1.69 9.45 22.31 0.21 -1.48 16 23 C 0.08 2.44 7.25 22.38 0.16 2.61 16 24 F -0.14 -5.69 16.76 44.97 0.75 -4.94 16 25 H 0.03 1.42 6.52 -2.39 -0.02 1.40 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 29 H 0.08 2.55 6.13 -2.39 -0.01 2.53 16 30 H -0.03 -1.91 8.00 -2.38 -0.02 -1.93 16 31 H 0.02 0.91 6.24 -2.38 -0.01 0.90 16 32 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 33 H 0.07 2.96 7.27 -2.39 -0.02 2.94 16 34 H 0.05 1.77 7.93 -2.39 -0.02 1.76 16 35 H 0.16 2.71 8.00 -2.91 -0.02 2.69 16 36 H 0.18 1.96 7.57 -2.91 -0.02 1.94 16 37 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.16 3.49 7.57 -2.91 -0.02 3.47 16 Total: -1.00 -80.60 349.85 0.16 -80.44 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.04 Total: 2.41 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.70 Total: -31.66 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -3.67 Total: -83.66 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -4.37 Total: -45.50 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.75 Total: -4.94 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 35.74 SS G_CDS: -0.33 Total: 35.42 kcal Total: -80.60 0.16 -80.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236929855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.662 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds