Wall clock time and date at job start Tue Mar 31 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48505 * 109.47162 * 89.05493 * 3 2 1 5 5 H 1.48497 * 109.47147 * 209.05334 * 3 2 1 6 6 H 1.48499 * 109.46917 * 329.05640 * 3 2 1 7 7 C 1.40053 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99748 * 333.88006 * 7 2 1 9 9 C 1.40796 * 120.00482 * 153.87851 * 7 2 1 10 10 C 1.40378 * 120.41416 * 325.00205 * 9 7 2 11 11 C 1.39991 * 117.97645 * 179.73830 * 10 9 7 12 12 C 1.40806 * 121.38681 * 180.22693 * 11 10 9 13 13 C 1.36108 * 119.46779 * 180.32838 * 12 11 10 14 14 C 1.39186 * 121.47094 * 359.96199 * 13 12 11 15 15 C 1.36213 * 121.76349 * 0.04056 * 14 13 12 16 16 C 1.40523 * 119.70650 * 359.97438 * 15 14 13 17 17 N 1.33598 * 120.98623 * 179.97438 * 16 15 14 18 18 C 1.31702 * 121.73646 * 180.02562 * 17 16 15 19 19 C 1.47710 * 119.45627 * 179.97438 * 18 17 16 20 20 C 1.40952 * 119.39198 * 136.89077 * 19 18 17 21 21 C 1.35224 * 121.67009 * 179.97438 * 20 19 18 22 22 C 1.41378 * 119.93989 * 0.02562 * 21 20 19 23 23 N 1.31958 * 134.37830 * 180.02562 * 22 21 20 24 24 N 1.39926 * 109.05764 * 179.97438 * 23 22 21 25 25 H 0.97002 * 125.00018 * 180.02562 * 24 23 22 26 26 C 1.33930 * 109.99543 * 359.97438 * 24 23 22 27 27 C 1.38515 * 107.83534 * 0.02562 * 26 24 23 28 28 C 1.38243 * 119.39605 * 316.61347 * 19 18 17 29 29 H 0.96998 * 119.99902 * 0.02562 * 1 2 3 30 30 H 1.07999 * 121.00961 * 359.97438 * 10 9 7 31 31 H 1.07996 * 120.26233 * 0.29804 * 12 11 10 32 32 H 1.08001 * 119.26224 * 179.97438 * 13 12 11 33 33 H 1.08000 * 119.11759 * 180.02562 * 14 13 12 34 34 H 1.08000 * 120.15442 * 179.97438 * 15 14 13 35 35 H 1.08006 * 119.16548 * 359.97438 * 20 19 18 36 36 H 1.07997 * 120.02928 * 179.97438 * 21 20 19 37 37 H 1.08002 * 126.08402 * 179.97438 * 26 24 23 38 38 H 1.08010 * 120.32940 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4694 2.0580 1.3999 5 1 3.5493 1.4345 -0.6799 6 1 1.4494 2.6468 -0.7199 7 6 2.0082 -1.2129 0.0005 8 1 1.5509 -2.1003 0.4128 9 6 3.3083 -1.2754 -0.5362 10 6 3.6560 -0.4938 -1.6493 11 6 4.9643 -0.5918 -2.1377 12 6 5.3913 0.1629 -3.2471 13 6 6.6705 0.0321 -3.6934 14 6 7.5704 -0.8323 -3.0769 15 6 7.2161 -1.5881 -2.0005 16 6 5.9103 -1.5018 -1.4886 17 7 5.5352 -2.2317 -0.4344 18 6 4.3152 -2.1628 0.0572 19 6 3.9545 -2.9931 1.2244 20 6 3.1975 -2.4258 2.2693 21 6 2.8413 -3.1436 3.3586 22 6 3.2299 -4.4984 3.4688 23 7 3.0472 -5.4401 4.3750 24 7 3.6713 -6.6161 3.9441 25 1 3.6803 -7.4530 4.4344 26 6 4.2533 -6.4162 2.7545 27 6 4.0209 -5.1020 2.3839 28 6 4.3605 -4.3138 1.2692 29 1 -0.4850 0.8400 -0.0004 30 1 2.9371 0.1658 -2.1124 31 1 4.7092 0.8396 -3.7401 32 1 6.9944 0.6123 -4.5449 33 1 8.5766 -0.9060 -3.4625 34 1 7.9354 -2.2508 -1.5425 35 1 2.8942 -1.3916 2.1983 36 1 2.2612 -2.6821 4.1440 37 1 4.8062 -7.1492 2.1857 38 1 4.9360 -4.7352 0.4581 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240209887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:00 Heat of formation + Delta-G solvation = 137.403585 kcal Electronic energy + Delta-G solvation = -24454.082072 eV Core-core repulsion = 21034.200674 eV Total energy + Delta-G solvation = -3419.881399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90276 -39.20789 -37.19696 -35.51231 -34.17318 -32.25268 -31.85360 -30.72619 -29.74162 -29.53777 -27.68140 -25.52150 -24.34750 -22.62780 -21.85636 -20.91621 -20.63629 -20.24928 -18.29047 -17.80039 -16.75631 -16.30713 -16.19637 -15.67998 -14.81087 -14.60927 -14.26980 -13.91578 -13.56144 -13.51765 -13.36501 -13.00144 -12.86720 -12.68112 -12.39119 -12.08446 -11.68915 -11.52246 -11.29945 -11.20692 -11.06197 -10.69074 -10.67311 -10.44836 -10.09236 -9.94024 -9.92485 -9.64811 -8.94866 -8.46934 -8.28756 -7.73102 -7.34329 -7.27067 -6.93035 -4.64629 0.88267 1.40539 1.81687 2.29536 2.77818 2.87771 2.89080 3.03361 3.11746 3.28130 3.69101 3.83695 4.33956 4.51635 4.58752 4.85396 5.08036 5.28164 5.41116 5.48085 5.55552 5.57117 5.75697 5.87773 5.95340 6.04573 6.07290 6.13161 6.17753 6.40586 6.55378 6.61353 6.77422 6.83149 6.84035 6.99186 7.09770 7.14778 7.23017 7.24326 7.28338 7.33995 7.51028 7.61936 7.72439 7.87083 8.03994 8.27267 8.43133 9.06633 9.69408 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.005293 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.601347 B = 5288.500154 C = 7331.805304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.090 3.910 3 Si 0.864 3.136 4 H -0.265 1.265 5 H -0.213 1.213 6 H -0.273 1.273 7 C -0.415 4.415 8 H 0.106 0.894 9 C 0.051 3.949 10 C -0.223 4.223 11 C -0.031 4.031 12 C -0.141 4.141 13 C -0.110 4.110 14 C -0.180 4.180 15 C -0.057 4.057 16 C 0.027 3.973 17 N -0.456 5.456 18 C 0.140 3.860 19 C -0.036 4.036 20 C -0.025 4.025 21 C -0.130 4.130 22 C 0.114 3.886 23 N -0.320 5.320 24 N -0.436 5.436 25 H 0.438 0.562 26 C 0.071 3.929 27 C -0.199 4.199 28 C -0.033 4.033 29 H 0.292 0.708 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.184 0.816 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -5.790 1.968 8.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.686 3.314 4 H -0.191 1.191 5 H -0.135 1.135 6 H -0.198 1.198 7 C -0.442 4.442 8 H 0.123 0.877 9 C 0.045 3.955 10 C -0.248 4.248 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.128 4.128 14 C -0.200 4.200 15 C -0.076 4.076 16 C -0.094 4.094 17 N -0.163 5.163 18 C -0.017 4.017 19 C -0.038 4.038 20 C -0.048 4.048 21 C -0.151 4.151 22 C -0.040 4.040 23 N -0.149 5.149 24 N -0.136 5.136 25 H 0.282 0.718 26 C -0.085 4.085 27 C -0.208 4.208 28 C -0.054 4.054 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.201 0.799 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.988 -6.475 3.413 9.457 hybrid contribution -0.177 1.008 -1.027 1.450 sum 5.811 -5.467 2.386 8.328 Atomic orbital electron populations 1.69735 1.08445 1.31184 1.29757 1.26230 0.94523 1.01893 0.90740 0.86749 0.84452 0.79615 0.80571 1.19050 1.13489 1.19770 1.19474 0.95658 0.97307 1.31772 0.87655 1.19247 0.92838 0.91865 0.91536 1.21076 0.95289 1.08585 0.99841 1.19550 0.94047 0.94927 0.94803 1.20839 0.96158 1.01038 0.97998 1.20498 0.93967 0.98901 0.99481 1.20282 0.99234 1.01236 0.99246 1.20513 0.93990 0.97848 0.95261 1.19299 0.94233 0.99431 0.96412 1.67500 1.17742 1.20697 1.10340 1.21061 0.88631 0.97869 0.94094 1.18060 0.99723 0.92414 0.93632 1.20968 0.92416 1.00888 0.90512 1.19678 1.05512 0.89809 1.00143 1.21045 0.96456 0.94712 0.91811 1.77545 1.23409 0.91602 1.22344 1.46181 1.39340 1.12533 1.15515 0.71848 1.22642 0.99423 0.97423 0.89023 1.19569 1.08638 0.93480 0.99150 1.20537 0.97367 0.92274 0.95264 0.89747 0.87226 0.87137 0.87725 0.87565 0.86711 0.84104 0.85694 0.79925 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.21 13.93 55.55 0.77 -17.44 16 2 C 0.09 2.08 5.25 -17.32 -0.09 1.99 16 3 Si 0.86 17.79 26.42 -169.99 -4.49 13.30 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.21 -4.55 5.10 56.52 0.29 -4.26 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.42 -9.82 6.84 -37.93 -0.26 -10.08 16 8 H 0.11 2.63 7.04 -52.48 -0.37 2.26 16 9 C 0.05 1.18 4.99 -104.69 -0.52 0.66 16 10 C -0.22 -5.14 6.47 -38.12 -0.25 -5.39 16 11 C -0.03 -0.69 5.87 -104.97 -0.62 -1.30 16 12 C -0.14 -2.73 9.80 -39.38 -0.39 -3.12 16 13 C -0.11 -1.89 9.91 -39.99 -0.40 -2.29 16 14 C -0.18 -3.06 9.90 -39.96 -0.40 -3.46 16 15 C -0.06 -1.09 9.98 -39.45 -0.39 -1.48 16 16 C 0.03 0.60 6.75 -82.94 -0.56 0.04 16 17 N -0.46 -10.24 10.02 -4.85 -0.05 -10.29 16 18 C 0.14 3.14 6.51 -80.62 -0.53 2.62 16 19 C -0.04 -0.73 5.30 -105.00 -0.56 -1.28 16 20 C -0.02 -0.48 7.79 -39.63 -0.31 -0.79 16 21 C -0.13 -2.33 10.06 -39.46 -0.40 -2.73 16 22 C 0.11 2.02 7.49 -82.98 -0.62 1.39 16 23 N -0.32 -5.23 12.69 33.30 0.42 -4.81 16 24 N -0.44 -5.12 7.18 30.88 0.22 -4.90 16 25 H 0.44 3.19 8.96 -182.73 -1.64 1.55 16 26 C 0.07 0.85 12.09 -16.53 -0.20 0.65 16 27 C -0.20 -3.26 6.32 -105.23 -0.66 -3.92 16 28 C -0.03 -0.59 9.65 -38.65 -0.37 -0.96 16 29 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 30 H 0.11 2.45 6.21 -52.49 -0.33 2.13 16 31 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.14 2.77 6.61 -52.48 -0.35 2.43 16 36 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 2.11 8.05 -52.48 -0.42 1.69 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -28.78 324.04 -10.64 -39.42 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.89 Total: 9.28 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -7.51 Total: -29.45 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 1.37 Total: -37.43 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.49 Total: 13.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.78 -10.64 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240209887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.820 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds