Wall clock time and date at job start Tue Mar 31 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86806 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47028 * 275.33483 * 3 2 1 5 5 H 1.48503 * 109.46862 * 35.32905 * 3 2 1 6 6 H 1.48489 * 109.46936 * 155.33256 * 3 2 1 7 7 C 1.40062 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00131 * 346.40759 * 7 2 1 9 9 C 1.40772 * 119.99611 * 166.40933 * 7 2 1 10 10 C 1.40414 * 120.42210 * 323.50810 * 9 7 2 11 11 C 1.39950 * 117.97700 * 180.23010 * 10 9 7 12 12 C 1.40814 * 121.39163 * 180.31444 * 11 10 9 13 13 C 1.36102 * 119.47235 * 179.69925 * 12 11 10 14 14 C 1.39199 * 121.47983 * 359.70907 * 13 12 11 15 15 C 1.36195 * 121.76867 * 0.02562 * 14 13 12 16 16 C 1.40564 * 119.70085 * 359.97438 * 15 14 13 17 17 N 1.33535 * 120.98015 * 180.02562 * 16 15 14 18 18 C 1.31738 * 121.73688 * 179.97438 * 17 16 15 19 19 C 1.47645 * 119.45746 * 180.02562 * 18 17 16 20 20 C 1.41744 * 120.37828 * 135.37308 * 19 18 17 21 21 C 1.34510 * 120.13689 * 179.70788 * 20 19 18 22 22 N 1.36733 * 120.96364 * 0.56772 * 21 20 19 23 23 C 1.36699 * 132.27644 * 179.70713 * 22 21 20 24 24 C 1.35379 * 107.20999 * 180.02562 * 23 22 21 25 25 N 1.33270 * 108.64363 * 0.02562 * 24 23 22 26 26 C 1.32731 * 109.14623 * 359.97438 * 25 24 23 27 27 C 1.38621 * 120.37716 * 315.64180 * 19 18 17 28 28 H 0.97000 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.07997 * 121.01582 * 359.95064 * 10 9 7 30 30 H 1.07996 * 120.26089 * 359.43179 * 12 11 10 31 31 H 1.08001 * 119.25443 * 179.72748 * 13 12 11 32 32 H 1.08005 * 119.11342 * 180.02562 * 14 13 12 33 33 H 1.07996 * 120.15177 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.92933 * 359.96779 * 20 19 18 35 35 H 1.07997 * 119.52023 * 180.27815 * 21 20 19 36 36 H 1.07991 * 126.39755 * 359.96559 * 23 22 21 37 37 H 1.08000 * 125.67561 * 179.97438 * 24 23 22 38 38 H 1.07990 * 120.46147 * 0.02833 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3765 2.1116 -1.3940 5 1 1.5000 2.6176 0.8096 6 1 3.5910 1.4103 0.5843 7 6 2.0081 -1.2130 -0.0005 8 1 1.4909 -2.1352 0.2188 9 6 3.3863 -1.2298 -0.2870 10 6 3.9239 -0.3559 -1.2456 11 6 5.2998 -0.4196 -1.4936 12 6 5.9154 0.4277 -2.4349 13 6 7.2577 0.3367 -2.6407 14 6 8.0411 -0.5731 -1.9362 15 6 7.5045 -1.4148 -1.0096 16 6 6.1241 -1.3734 -0.7477 17 7 5.5711 -2.1865 0.1558 18 6 4.2795 -2.1600 0.4133 19 6 3.7214 -3.0814 1.4230 20 6 2.7901 -2.6133 2.3836 21 6 2.2803 -3.4583 3.2976 22 7 2.6550 -4.7730 3.3265 23 6 2.2975 -5.8134 4.1379 24 6 2.9797 -6.9037 3.7151 25 7 3.7376 -6.5555 2.6757 26 6 3.5586 -5.2656 2.4191 27 6 4.1063 -4.4129 1.4458 28 1 -0.4850 0.8400 0.0004 29 1 3.2942 0.3409 -1.7787 30 1 5.3264 1.1410 -2.9922 31 1 7.7255 0.9851 -3.3667 32 1 9.1029 -0.6127 -2.1297 33 1 8.1368 -2.1102 -0.4778 34 1 2.4861 -1.5770 2.3791 35 1 1.5680 -3.0920 4.0221 36 1 1.6016 -5.7731 4.9627 37 1 2.9202 -7.8911 4.1487 38 1 4.8181 -4.7894 0.7262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240504367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:45 Heat of formation + Delta-G solvation = 132.640516 kcal Electronic energy + Delta-G solvation = -24576.768972 eV Core-core repulsion = 21156.681031 eV Total energy + Delta-G solvation = -3420.087941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36176 -39.40524 -37.36999 -35.84146 -34.32456 -33.20544 -32.38882 -30.51203 -29.70570 -29.55498 -27.83389 -25.68032 -24.31337 -22.86404 -21.97928 -21.58905 -21.08566 -20.80631 -18.39389 -17.48066 -16.89209 -16.47472 -16.10202 -15.86521 -15.47311 -14.89508 -14.38221 -14.13698 -13.83899 -13.72915 -13.55633 -13.37749 -13.08191 -12.92934 -12.62608 -12.22125 -11.97848 -11.62528 -11.46178 -11.43952 -11.21840 -11.02469 -10.80446 -10.55900 -10.34427 -10.16599 -9.82898 -9.78407 -9.29475 -8.62013 -8.47516 -7.89637 -7.53675 -7.34679 -7.21239 -4.86439 0.86505 1.35478 1.58397 1.82482 2.82628 2.90750 2.94999 2.97510 3.08890 3.18903 3.51781 3.67944 3.97643 4.40471 4.50598 4.74344 4.89068 5.03243 5.12546 5.32516 5.44366 5.48987 5.53211 5.59847 5.71706 5.76762 5.89486 5.94073 5.98313 6.11989 6.28132 6.38219 6.44451 6.63120 6.71868 6.76747 6.83190 6.89662 6.93781 7.01236 7.10122 7.30064 7.38674 7.42226 7.54942 7.87072 8.06339 8.17705 8.27615 8.83480 9.62960 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.005339 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.378811 B = 5242.766634 C = 7280.791804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.084 3.916 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.414 4.414 8 H 0.105 0.895 9 C 0.062 3.938 10 C -0.240 4.240 11 C -0.023 4.023 12 C -0.143 4.143 13 C -0.104 4.104 14 C -0.175 4.175 15 C -0.054 4.054 16 C 0.029 3.971 17 N -0.443 5.443 18 C 0.129 3.871 19 C 0.019 3.981 20 C -0.087 4.087 21 C 0.029 3.971 22 N -0.356 5.356 23 C -0.115 4.115 24 C 0.025 3.975 25 N -0.504 5.504 26 C 0.229 3.771 27 C -0.071 4.071 28 H 0.293 0.707 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -0.754 4.222 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.441 4.441 8 H 0.122 0.878 9 C 0.057 3.943 10 C -0.265 4.265 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.122 4.122 14 C -0.195 4.195 15 C -0.073 4.073 16 C -0.093 4.093 17 N -0.149 5.149 18 C -0.027 4.027 19 C 0.012 3.988 20 C -0.108 4.108 21 C -0.092 4.092 22 N -0.028 5.028 23 C -0.247 4.247 24 C -0.129 4.129 25 N -0.224 5.224 26 C -0.013 4.013 27 C -0.093 4.093 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.192 0.808 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.686 -1.718 4.227 5.865 hybrid contribution -1.081 1.903 -0.085 2.190 sum 2.605 0.185 4.141 4.896 Atomic orbital electron populations 1.69616 1.08063 1.31146 1.31615 1.26229 0.94870 1.01738 0.91073 0.86304 0.81403 0.79479 0.79917 1.18928 1.21052 1.16418 1.19495 0.90949 0.96130 1.37534 0.87771 1.19255 0.93688 0.90907 0.90480 1.21165 0.93389 1.08051 1.03862 1.19563 0.93818 0.94344 0.94800 1.20878 0.94859 1.00307 1.00140 1.20563 0.93997 0.98435 0.99226 1.20349 0.99136 0.99628 1.00401 1.20575 0.92638 0.97597 0.96473 1.19312 0.93482 0.97814 0.98653 1.67462 1.12351 1.20575 1.14527 1.20781 0.88471 0.97698 0.95754 1.18400 0.94988 0.91565 0.93857 1.21084 0.95739 1.01395 0.92555 1.21382 1.03490 0.81219 1.03143 1.42867 1.29153 1.08027 1.22713 1.22571 1.11234 0.87332 1.03539 1.22402 0.96369 0.98685 0.95404 1.70706 1.25644 1.08453 1.17628 1.20821 0.95013 0.90915 0.94571 1.20567 1.00498 0.90864 0.97354 0.89616 0.86500 0.86854 0.87379 0.87195 0.86325 0.81923 0.82158 0.80669 0.80827 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.81 13.93 55.55 0.77 -17.04 16 2 C 0.08 1.86 5.45 -17.32 -0.09 1.76 16 3 Si 0.90 18.20 24.62 -169.99 -4.19 14.02 16 4 H -0.26 -5.25 6.85 56.52 0.39 -4.86 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.24 -5.12 6.79 56.52 0.38 -4.73 16 7 C -0.41 -9.40 7.04 -37.94 -0.27 -9.67 16 8 H 0.10 2.49 7.22 -52.49 -0.38 2.11 16 9 C 0.06 1.41 5.09 -104.68 -0.53 0.88 16 10 C -0.24 -5.35 6.94 -38.12 -0.26 -5.62 16 11 C -0.02 -0.49 5.87 -104.97 -0.62 -1.11 16 12 C -0.14 -2.65 9.80 -39.38 -0.39 -3.03 16 13 C -0.10 -1.69 9.91 -39.99 -0.40 -2.09 16 14 C -0.17 -2.84 9.90 -39.96 -0.40 -3.24 16 15 C -0.05 -0.99 9.99 -39.44 -0.39 -1.39 16 16 C 0.03 0.62 6.75 -82.93 -0.56 0.06 16 17 N -0.44 -9.73 10.07 -4.85 -0.05 -9.78 16 18 C 0.13 2.81 6.55 -80.63 -0.53 2.28 16 19 C 0.02 0.37 5.28 -104.58 -0.55 -0.18 16 20 C -0.09 -1.51 8.02 -39.56 -0.32 -1.82 16 21 C 0.03 0.43 10.91 -16.68 -0.18 0.25 16 22 N -0.36 -5.84 2.95 -62.72 -0.18 -6.03 16 23 C -0.11 -1.58 11.75 -16.40 -0.19 -1.78 16 24 C 0.02 0.36 11.83 -17.95 -0.21 0.15 16 25 N -0.50 -9.29 11.31 -12.81 -0.14 -9.43 16 26 C 0.23 4.28 7.79 -155.94 -1.22 3.06 16 27 C -0.07 -1.36 9.76 -38.58 -0.38 -1.74 16 28 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 29 H 0.12 2.55 5.37 -52.49 -0.28 2.27 16 30 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.16 2.80 6.89 -52.49 -0.36 2.44 16 35 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -27.19 324.48 -9.96 -37.14 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.57 Total: 9.43 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -7.48 Total: -23.20 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.39 Total: -42.28 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.19 Total: 14.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.19 -9.96 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240504367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.785 kcal (2) G-P(sol) polarization free energy of solvation -27.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds