Wall clock time and date at job start Tue Mar 31 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86806 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47028 * 275.33483 * 3 2 1 5 5 H 1.48503 * 109.46862 * 35.32905 * 3 2 1 6 6 H 1.48489 * 109.46936 * 155.33256 * 3 2 1 7 7 C 1.40062 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00131 * 346.40759 * 7 2 1 9 9 C 1.40772 * 119.99611 * 166.40933 * 7 2 1 10 10 C 1.40414 * 120.42210 * 323.50810 * 9 7 2 11 11 C 1.39950 * 117.97700 * 180.23010 * 10 9 7 12 12 C 1.40814 * 121.39163 * 180.31444 * 11 10 9 13 13 C 1.36102 * 119.47235 * 179.69925 * 12 11 10 14 14 C 1.39199 * 121.47983 * 359.70907 * 13 12 11 15 15 C 1.36195 * 121.76867 * 0.02562 * 14 13 12 16 16 C 1.40564 * 119.70085 * 359.97438 * 15 14 13 17 17 N 1.33535 * 120.98015 * 180.02562 * 16 15 14 18 18 C 1.31738 * 121.73688 * 179.97438 * 17 16 15 19 19 C 1.47645 * 119.45746 * 180.02562 * 18 17 16 20 20 C 1.41744 * 120.37828 * 135.37308 * 19 18 17 21 21 C 1.34510 * 120.13689 * 179.70788 * 20 19 18 22 22 N 1.36733 * 120.96364 * 0.56772 * 21 20 19 23 23 C 1.36699 * 132.27644 * 179.70713 * 22 21 20 24 24 C 1.35379 * 107.20999 * 180.02562 * 23 22 21 25 25 N 1.33270 * 108.64363 * 0.02562 * 24 23 22 26 26 C 1.32731 * 109.14623 * 359.97438 * 25 24 23 27 27 C 1.38621 * 120.37716 * 315.64180 * 19 18 17 28 28 H 0.97000 * 120.00174 * 359.97438 * 1 2 3 29 29 H 1.07997 * 121.01582 * 359.95064 * 10 9 7 30 30 H 1.07996 * 120.26089 * 359.43179 * 12 11 10 31 31 H 1.08001 * 119.25443 * 179.72748 * 13 12 11 32 32 H 1.08005 * 119.11342 * 180.02562 * 14 13 12 33 33 H 1.07996 * 120.15177 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.92933 * 359.96779 * 20 19 18 35 35 H 1.07997 * 119.52023 * 180.27815 * 21 20 19 36 36 H 1.07991 * 126.39755 * 359.96559 * 23 22 21 37 37 H 1.08000 * 125.67561 * 179.97438 * 24 23 22 38 38 H 1.07990 * 120.46147 * 0.02833 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3765 2.1116 -1.3940 5 1 1.5000 2.6176 0.8096 6 1 3.5910 1.4103 0.5843 7 6 2.0081 -1.2130 -0.0005 8 1 1.4909 -2.1352 0.2188 9 6 3.3863 -1.2298 -0.2870 10 6 3.9239 -0.3559 -1.2456 11 6 5.2998 -0.4196 -1.4936 12 6 5.9154 0.4277 -2.4349 13 6 7.2577 0.3367 -2.6407 14 6 8.0411 -0.5731 -1.9362 15 6 7.5045 -1.4148 -1.0096 16 6 6.1241 -1.3734 -0.7477 17 7 5.5711 -2.1865 0.1558 18 6 4.2795 -2.1600 0.4133 19 6 3.7214 -3.0814 1.4230 20 6 2.7901 -2.6133 2.3836 21 6 2.2803 -3.4583 3.2976 22 7 2.6550 -4.7730 3.3265 23 6 2.2975 -5.8134 4.1379 24 6 2.9797 -6.9037 3.7151 25 7 3.7376 -6.5555 2.6757 26 6 3.5586 -5.2656 2.4191 27 6 4.1063 -4.4129 1.4458 28 1 -0.4850 0.8400 0.0004 29 1 3.2942 0.3409 -1.7787 30 1 5.3264 1.1410 -2.9922 31 1 7.7255 0.9851 -3.3667 32 1 9.1029 -0.6127 -2.1297 33 1 8.1368 -2.1102 -0.4778 34 1 2.4861 -1.5770 2.3791 35 1 1.5680 -3.0920 4.0221 36 1 1.6016 -5.7731 4.9627 37 1 2.9202 -7.8911 4.1487 38 1 4.8181 -4.7894 0.7262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240504367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:45 Heat of formation + Delta-G solvation = 119.714787 kcal Electronic energy + Delta-G solvation = -24577.329474 eV Core-core repulsion = 21156.681031 eV Total energy + Delta-G solvation = -3420.648443 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.62411 -40.95513 -38.75129 -37.26134 -35.96394 -34.56726 -33.99385 -31.96758 -31.14189 -30.91164 -29.18123 -27.27968 -25.73116 -24.20630 -23.56113 -22.85823 -22.52312 -22.23560 -19.98530 -18.75935 -18.40877 -17.97739 -17.49672 -17.34156 -16.75518 -16.40840 -15.74229 -15.47764 -15.31659 -15.15483 -14.94236 -14.76272 -14.53045 -14.35590 -14.14199 -13.80032 -13.43863 -13.06868 -12.98653 -12.77394 -12.76166 -12.44002 -12.24114 -12.10046 -11.82747 -11.69214 -11.44488 -11.10583 -10.88196 -10.21840 -9.77825 -9.38622 -9.06848 -9.00431 -8.56158 -6.57117 -0.59600 -0.05908 0.12430 0.42505 1.20812 1.29841 1.34180 1.47888 1.73518 1.95340 2.05338 2.07105 2.56910 2.79559 3.12466 3.38330 3.55848 3.64041 3.83898 3.89117 4.06981 4.16606 4.18169 4.27944 4.43893 4.48601 4.52127 4.58114 4.64024 4.76220 4.85677 4.90542 5.07010 5.13877 5.22506 5.35279 5.39200 5.45440 5.56138 5.67863 5.72914 5.75198 5.80252 6.06518 6.15107 6.16817 6.43137 6.58205 6.93634 7.21003 8.01387 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.005339 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.378811 B = 5242.766634 C = 7280.791804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.065 3.935 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.429 4.429 8 H 0.081 0.919 9 C 0.048 3.952 10 C -0.251 4.251 11 C -0.049 4.049 12 C -0.157 4.157 13 C -0.092 4.092 14 C -0.152 4.152 15 C -0.074 4.074 16 C 0.008 3.992 17 N -0.459 5.459 18 C 0.117 3.883 19 C 0.003 3.997 20 C -0.108 4.108 21 C 0.050 3.950 22 N -0.362 5.362 23 C -0.094 4.094 24 C 0.013 3.987 25 N -0.533 5.533 26 C 0.197 3.803 27 C -0.082 4.082 28 H 0.301 0.699 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.206 0.794 36 H 0.224 0.776 37 H 0.212 0.788 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -0.296 4.900 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.154 4.154 3 Si 0.770 3.230 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.043 3.957 10 C -0.277 4.277 11 C -0.051 4.051 12 C -0.176 4.176 13 C -0.110 4.110 14 C -0.172 4.172 15 C -0.093 4.093 16 C -0.114 4.114 17 N -0.165 5.165 18 C -0.039 4.039 19 C -0.004 4.004 20 C -0.129 4.129 21 C -0.070 4.070 22 N -0.034 5.034 23 C -0.225 4.225 24 C -0.139 4.139 25 N -0.254 5.254 26 C -0.045 4.045 27 C -0.104 4.104 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.223 0.777 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.863 -1.263 4.902 7.020 hybrid contribution -1.188 1.626 -0.319 2.039 sum 3.675 0.363 4.583 5.886 Atomic orbital electron populations 1.69617 1.08654 1.32075 1.33514 1.26567 0.95174 1.03031 0.90648 0.85686 0.79544 0.77781 0.79992 1.18477 1.19438 1.18708 1.19254 0.91094 0.95653 1.39694 0.90114 1.19404 0.93832 0.91611 0.90872 1.21303 0.94258 1.08164 1.03933 1.19880 0.93680 0.95487 0.96074 1.21167 0.96341 1.00283 0.99771 1.21083 0.93000 0.97993 0.98875 1.20897 1.01245 0.97266 0.97822 1.20867 0.91462 0.99083 0.97887 1.19905 0.95075 0.97805 0.98648 1.67527 1.12506 1.21264 1.15249 1.21097 0.88509 0.98031 0.96241 1.18448 0.96093 0.91474 0.94360 1.21033 0.96588 1.01795 0.93483 1.21901 1.02311 0.80393 1.02407 1.43129 1.28786 1.08832 1.22680 1.23452 1.10159 0.85847 1.03036 1.23167 0.95577 1.00749 0.94417 1.70668 1.26955 1.08511 1.19293 1.20736 0.96716 0.91333 0.95712 1.20420 1.00896 0.91099 0.97940 0.88793 0.86581 0.85275 0.82979 0.82941 0.85015 0.82451 0.77749 0.75909 0.77147 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.29 13.93 21.85 0.30 -37.98 16 2 C 0.07 3.02 5.45 85.29 0.46 3.49 16 3 Si 0.95 38.36 24.62 68.60 1.69 40.05 16 4 H -0.26 -10.20 6.85 99.48 0.68 -9.52 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -11.48 6.79 99.48 0.68 -10.80 16 7 C -0.43 -20.74 7.04 23.33 0.16 -20.58 16 8 H 0.08 4.18 7.22 -2.91 -0.02 4.16 16 9 C 0.05 2.31 5.09 -19.90 -0.10 2.21 16 10 C -0.25 -11.66 6.94 23.22 0.16 -11.50 16 11 C -0.05 -2.13 5.87 -20.09 -0.12 -2.25 16 12 C -0.16 -5.53 9.80 22.40 0.22 -5.31 16 13 C -0.09 -2.62 9.91 22.00 0.22 -2.41 16 14 C -0.15 -4.37 9.90 22.02 0.22 -4.15 16 15 C -0.07 -2.63 9.99 22.36 0.22 -2.41 16 16 C 0.01 0.33 6.75 41.60 0.28 0.61 16 17 N -0.46 -21.18 10.07 -169.26 -1.70 -22.89 16 18 C 0.12 5.43 6.55 43.87 0.29 5.72 16 19 C 0.00 0.13 5.28 -19.84 -0.10 0.03 16 20 C -0.11 -3.91 8.02 22.28 0.18 -3.74 16 21 C 0.05 1.48 10.91 83.08 0.91 2.39 16 22 N -0.36 -11.44 2.95 -352.35 -1.04 -12.47 16 23 C -0.09 -2.28 11.75 83.27 0.98 -1.30 16 24 C 0.01 0.34 11.83 83.81 0.99 1.33 16 25 N -0.53 -19.58 11.31 -194.45 -2.20 -21.78 16 26 C 0.20 7.50 7.79 133.91 1.04 8.54 16 27 C -0.08 -3.34 9.76 22.92 0.22 -3.12 16 28 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 29 H 0.12 5.24 5.37 -2.91 -0.02 5.22 16 30 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.16 5.78 6.89 -2.91 -0.02 5.76 16 35 H 0.21 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.22 3.12 8.06 -2.92 -0.02 3.10 16 37 H 0.21 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.14 5.66 8.06 -2.92 -0.02 5.64 16 Total: -1.00 -63.54 324.48 4.33 -59.20 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 1.05 Total: 28.32 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 6.23 Total: -32.45 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.64 Total: -95.12 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.69 Total: 40.05 kcal Total: -63.54 4.33 -59.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240504367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.917 kcal (2) G-P(sol) polarization free energy of solvation -63.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds