Wall clock time and date at job start Tue Mar 31 2020 11:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39097 * 120.56301 * 272.87553 * 3 2 1 5 5 C 1.39367 * 119.80208 * 180.29828 * 4 3 2 6 6 C 1.48036 * 119.49503 * 179.72585 * 5 4 3 7 7 C 1.39672 * 120.08678 * 359.97438 * 6 5 4 8 8 C 1.38004 * 120.09954 * 179.97438 * 7 6 5 9 9 C 1.38192 * 120.26627 * 359.97438 * 8 7 6 10 10 C 1.39436 * 120.17028 * 0.03486 * 9 8 7 11 11 C 1.48430 * 120.05388 * 180.02562 * 10 9 8 12 12 C 1.40846 * 126.03559 * 5.00586 * 11 10 9 13 13 C 1.35084 * 107.85047 * 179.97438 * 12 11 10 14 14 N 1.35039 * 107.97688 * 359.97438 * 13 12 11 15 15 H 0.96998 * 125.93209 * 180.02562 * 14 13 12 16 16 N 1.31614 * 126.04146 * 184.69626 * 11 10 9 17 17 C 1.39076 * 119.89906 * 359.70876 * 10 9 8 18 18 C 1.39962 * 121.00748 * 359.71393 * 5 4 3 19 19 C 1.36020 * 121.19230 * 359.96626 * 18 5 4 20 20 C 1.41037 * 120.10642 * 0.03176 * 19 18 5 21 21 C 1.40449 * 120.49165 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00331 * 154.64362 * 21 20 19 23 23 C 1.40310 * 120.00194 * 334.63809 * 21 20 19 24 24 N 1.30637 * 119.99546 * 334.61391 * 23 21 20 25 25 Si 1.86799 * 120.00268 * 154.61223 * 23 21 20 26 26 H 1.48496 * 109.46951 * 180.02562 * 25 23 21 27 27 H 1.48494 * 109.47304 * 300.00598 * 25 23 21 28 28 H 1.48500 * 109.46892 * 60.00629 * 25 23 21 29 29 H 1.07997 * 120.10278 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.94930 * 359.95144 * 7 6 5 31 31 H 1.07994 * 119.86991 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.91650 * 180.02562 * 9 8 7 33 33 H 1.07999 * 126.07367 * 359.95622 * 12 11 10 34 34 H 1.08000 * 126.01379 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.13598 * 180.29250 * 17 10 9 36 36 H 1.08000 * 119.40777 * 180.02562 * 18 5 4 37 37 H 1.07998 * 119.95060 * 179.97438 * 19 18 5 38 38 H 0.97000 * 120.00110 * 354.18401 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.0591 1.1962 5 6 4.6689 -0.0513 1.1781 6 6 5.4148 -0.1090 2.4555 7 6 4.7237 -0.1702 3.6677 8 6 5.4188 -0.2245 4.8586 9 6 6.8007 -0.2193 4.8594 10 6 7.5019 -0.1582 3.6558 11 6 8.9862 -0.1533 3.6596 12 6 9.8124 -0.3050 4.7902 13 6 11.0966 -0.2441 4.3758 14 7 11.0946 -0.0619 3.0377 15 1 11.8791 0.0173 2.4729 16 7 9.7628 -0.0121 2.6065 17 6 6.8085 -0.1086 2.4512 18 6 5.3739 0.0101 -0.0295 19 6 4.7236 0.0633 -1.2230 20 6 3.3138 0.0580 -1.2613 21 6 2.6340 0.1132 -2.4891 22 1 1.6350 -0.2889 -2.5719 23 6 3.2526 0.6908 -3.6082 24 7 4.1880 1.5884 -3.4467 25 14 2.7388 0.1765 -5.3289 26 1 3.5382 0.9279 -6.3295 27 1 2.9732 -1.2797 -5.5010 28 1 1.2966 0.4721 -5.5238 29 1 2.7463 -0.1062 2.1365 30 1 3.6438 -0.1746 3.6730 31 1 4.8807 -0.2722 5.7938 32 1 7.3390 -0.2624 5.7948 33 1 9.4784 -0.4448 5.8077 34 1 11.9712 -0.3274 5.0039 35 1 7.3478 -0.0661 1.5165 36 1 6.4538 0.0143 -0.0135 37 1 5.2877 0.1105 -2.1427 38 1 4.3964 1.9172 -2.5582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240561822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:53 Heat of formation + Delta-G solvation = 129.157060 kcal Electronic energy + Delta-G solvation = -23331.523777 eV Core-core repulsion = 19911.284782 eV Total energy + Delta-G solvation = -3420.238995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16744 -39.02419 -37.63405 -35.28060 -34.61962 -32.74393 -31.50702 -30.28602 -30.10590 -29.42968 -28.59027 -25.57388 -23.75693 -22.64783 -22.12813 -21.10294 -20.72552 -19.31539 -18.55917 -18.28551 -16.99588 -16.31577 -15.18113 -14.92640 -14.73161 -14.72081 -14.26042 -13.89770 -13.67177 -13.50521 -13.38901 -13.03567 -12.79356 -12.62903 -12.53791 -12.36725 -11.98727 -11.75682 -11.43043 -11.30820 -11.11213 -10.98567 -10.82569 -10.61563 -10.49153 -10.08069 -9.94167 -9.86305 -9.45773 -8.94092 -8.80825 -8.17677 -8.03872 -7.71936 -7.35524 -4.87772 1.17020 1.57094 1.94862 2.08175 2.57003 2.76492 2.94431 2.97935 3.16079 3.19394 3.70487 3.77985 3.94429 4.29379 4.46210 4.48861 4.67703 5.08352 5.22896 5.26007 5.29224 5.38447 5.47814 5.57074 5.71026 5.75368 5.84624 5.91292 6.05375 6.23329 6.43109 6.47537 6.56415 6.59858 6.76874 6.82033 6.89096 6.95865 7.15719 7.22100 7.25279 7.36781 7.46281 7.57032 7.60188 7.70369 7.81373 8.20936 8.32450 8.68506 9.52112 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.003205 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.550619 B = 8733.253450 C =10431.199402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.298 3.702 3 C -0.189 4.189 4 C 0.010 3.990 5 C -0.215 4.215 6 C 0.018 3.982 7 C -0.135 4.135 8 C -0.111 4.111 9 C -0.130 4.130 10 C -0.016 4.016 11 C 0.125 3.875 12 C -0.261 4.261 13 C 0.053 3.947 14 N -0.480 5.480 15 H 0.438 0.562 16 N -0.283 5.283 17 C -0.110 4.110 18 C -0.035 4.035 19 C -0.217 4.217 20 C 0.129 3.871 21 C -0.460 4.460 22 H 0.088 0.912 23 C 0.035 3.965 24 N -0.752 5.752 25 Si 1.067 2.933 26 H -0.268 1.268 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.413 -2.320 10.921 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.012 4.012 3 C -0.195 4.195 4 C -0.010 4.010 5 C -0.216 4.216 6 C 0.018 3.982 7 C -0.154 4.154 8 C -0.129 4.129 9 C -0.150 4.150 10 C -0.017 4.017 11 C -0.040 4.040 12 C -0.290 4.290 13 C -0.094 4.094 14 N -0.188 5.188 15 H 0.282 0.718 16 N -0.106 5.106 17 C -0.130 4.130 18 C -0.054 4.054 19 C -0.236 4.236 20 C 0.123 3.877 21 C -0.485 4.485 22 H 0.106 0.894 23 C -0.192 4.192 24 N -0.372 5.372 25 Si 0.888 3.112 26 H -0.192 1.192 27 H -0.193 1.193 28 H -0.195 1.195 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.166 0.834 34 H 0.193 0.807 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.133 -1.865 8.077 14.695 hybrid contribution 0.716 -0.278 2.379 2.500 sum 12.849 -2.143 10.456 16.704 Atomic orbital electron populations 1.81039 1.12602 1.14931 1.09657 1.25713 0.92640 0.91289 0.91556 1.16684 0.83308 1.25591 0.93873 1.20667 0.92844 0.92411 0.95120 1.17706 0.91761 1.21090 0.91033 1.18816 0.92131 0.94432 0.92800 1.21295 0.99886 1.02366 0.91817 1.20846 0.93706 1.00622 0.97733 1.20868 0.94003 1.03682 0.96430 1.17661 0.87150 1.02959 0.93979 1.20878 0.93534 0.98687 0.90861 1.21520 0.91451 1.15889 1.00139 1.22495 0.99579 1.01583 0.85742 1.46355 1.07375 1.58565 1.06478 0.71795 1.77617 0.86555 1.24674 1.21778 1.21278 0.93439 1.01046 0.97227 1.20500 0.98126 0.94844 0.91963 1.20780 0.93546 1.12152 0.97108 1.18503 0.91437 0.87339 0.90394 1.20952 1.03410 1.29826 0.94329 0.89430 1.27441 0.92241 0.92761 1.06793 1.70398 1.20035 1.15762 1.30992 0.83589 0.77526 0.77843 0.72246 1.19174 1.19254 1.19515 0.87632 0.86116 0.86345 0.86467 0.83373 0.80727 0.85465 0.88012 0.86723 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.98 18.54 41.84 0.78 -11.20 16 2 C 0.30 6.90 14.30 -22.47 -0.32 6.58 16 3 C -0.19 -4.25 5.93 -104.27 -0.62 -4.87 16 4 C 0.01 0.21 9.12 -38.84 -0.35 -0.14 16 5 C -0.21 -4.24 5.88 -104.81 -0.62 -4.86 16 6 C 0.02 0.32 5.88 -104.92 -0.62 -0.29 16 7 C -0.13 -2.10 9.41 -39.13 -0.37 -2.47 16 8 C -0.11 -1.48 10.02 -39.68 -0.40 -1.88 16 9 C -0.13 -1.74 9.57 -39.15 -0.37 -2.11 16 10 C -0.02 -0.24 5.87 -104.94 -0.62 -0.85 16 11 C 0.13 1.80 6.98 -82.78 -0.58 1.22 16 12 C -0.26 -2.86 10.17 -39.72 -0.40 -3.27 16 13 C 0.05 0.45 11.97 -17.26 -0.21 0.24 16 14 N -0.48 -4.83 7.35 30.42 0.22 -4.61 16 15 H 0.44 2.87 8.96 -182.62 -1.64 1.23 16 16 N -0.28 -4.14 12.37 33.43 0.41 -3.73 16 17 C -0.11 -1.89 9.05 -38.85 -0.35 -2.24 16 18 C -0.04 -0.72 9.30 -39.73 -0.37 -1.09 16 19 C -0.22 -4.80 7.88 -39.32 -0.31 -5.11 16 20 C 0.13 3.03 5.46 -104.62 -0.57 2.46 16 21 C -0.46 -10.95 8.48 -37.97 -0.32 -11.27 16 22 H 0.09 2.12 7.45 -52.49 -0.39 1.73 16 23 C 0.03 0.78 4.95 -17.28 -0.09 0.70 16 24 N -0.75 -17.47 12.30 55.57 0.68 -16.79 16 25 Si 1.07 19.27 30.01 -169.99 -5.10 14.17 16 26 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 27 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 28 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 29 H 0.11 1.88 6.12 -52.49 -0.32 1.56 16 30 H 0.12 1.75 6.14 -52.49 -0.32 1.42 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.24 7.04 -52.48 -0.37 0.87 16 33 H 0.15 1.29 7.35 -52.49 -0.39 0.91 16 34 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 2.23 5.92 -52.49 -0.31 1.92 16 36 H 0.10 1.90 6.09 -52.49 -0.32 1.58 16 37 H 0.11 2.57 6.48 -52.49 -0.34 2.23 16 38 H 0.31 7.30 6.68 -40.82 -0.27 7.03 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -28.03 336.48 -9.73 -37.76 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.31 Total: 8.60 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -7.48 Total: -29.27 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 2.10 Total: -36.33 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.10 Total: 14.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.03 -9.73 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240561822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.913 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds