Wall clock time and date at job start Tue Mar 31 2020 11:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00037 * 2 1 4 4 O 1.21587 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.47654 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.39755 * 120.01474 * 179.97438 * 5 3 2 7 7 C 1.37610 * 119.98052 * 180.02562 * 6 5 3 8 8 C 1.39608 * 120.01405 * 359.97399 * 7 6 5 9 9 C 1.48104 * 119.97817 * 180.02562 * 8 7 6 10 10 C 1.39404 * 120.14264 * 310.00527 * 9 8 7 11 11 C 1.37909 * 119.96089 * 180.02562 * 10 9 8 12 12 C 1.38730 * 120.25784 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.85248 * 180.02562 * 12 11 10 14 14 C 1.38326 * 120.29339 * 359.97438 * 12 11 10 15 15 C 1.38714 * 120.03107 * 0.02562 * 14 12 11 16 16 O 1.35632 * 120.12992 * 179.97438 * 15 14 12 17 17 C 1.34808 * 116.99808 * 354.40333 * 16 15 14 18 18 H 1.07995 * 120.00090 * 5.07117 * 17 16 15 19 19 C 1.38661 * 120.00028 * 185.06501 * 17 16 15 20 20 N 1.31544 * 120.00393 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99854 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46797 * 90.00030 * 21 19 17 23 23 H 1.48500 * 109.47018 * 210.00131 * 21 19 17 24 24 H 1.48496 * 109.47034 * 330.00131 * 21 19 17 25 25 C 1.39601 * 120.04092 * 0.28013 * 8 7 6 26 26 C 1.37609 * 120.01280 * 359.48713 * 25 8 7 27 27 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47063 * 300.00063 * 1 2 3 29 29 H 1.08990 * 109.47268 * 60.00443 * 1 2 3 30 30 H 0.96998 * 120.00115 * 179.97438 * 2 1 3 31 31 H 1.08004 * 120.01611 * 359.97438 * 6 5 3 32 32 H 1.07998 * 119.99666 * 180.02562 * 7 6 5 33 33 H 1.08003 * 120.02077 * 359.97438 * 10 9 8 34 34 H 1.08004 * 119.87105 * 179.97438 * 11 10 9 35 35 H 1.08001 * 119.98943 * 179.75034 * 14 12 11 36 36 H 0.97001 * 120.00087 * 180.02562 * 20 19 17 37 37 H 1.07993 * 119.99106 * 179.72395 * 25 8 7 38 38 H 1.07996 * 120.00703 * 180.23248 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6154 1.1672 -0.0006 6 6 4.3145 2.3773 -0.0011 7 6 5.6906 2.3765 -0.0022 8 6 6.3882 1.1672 -0.0022 9 6 7.8693 1.1673 -0.0027 10 6 8.5689 1.9421 -0.9266 11 6 9.9480 1.9389 -0.9241 12 6 10.6436 1.1674 -0.0047 13 9 11.9946 1.1708 -0.0092 14 6 9.9601 0.3954 0.9175 15 6 8.5730 0.3896 0.9258 16 8 7.9008 -0.3670 1.8287 17 6 8.6357 -1.1793 2.6145 18 1 9.7141 -1.1470 2.5657 19 6 8.0070 -2.0563 3.4854 20 7 8.7241 -2.8486 4.2525 21 14 6.1417 -2.1125 3.5693 22 1 5.6321 -3.1084 2.5926 23 1 5.7193 -2.5013 4.9388 24 1 5.5909 -0.7727 3.2430 25 6 5.6907 -0.0420 -0.0070 26 6 4.3146 -0.0429 -0.0011 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.9500 -0.8400 0.0004 31 1 3.7750 3.3129 -0.0015 32 1 6.2311 3.3115 -0.0022 33 1 8.0313 2.5438 -1.6444 34 1 10.4886 2.5394 -1.6408 35 1 10.5066 -0.2065 1.6284 36 1 8.2842 -3.4623 4.8614 37 1 6.2311 -0.9770 -0.0115 38 1 3.7751 -0.9784 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240566889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:24 Heat of formation + Delta-G solvation = -75.150173 kcal Electronic energy + Delta-G solvation = -25110.925625 eV Core-core repulsion = 21218.765228 eV Total energy + Delta-G solvation = -3892.160397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91221 -41.43748 -40.87857 -39.25072 -38.05870 -35.75527 -34.53598 -33.55518 -32.01002 -31.21001 -30.14167 -27.77006 -27.24543 -24.89685 -23.83463 -23.06979 -22.65342 -21.41281 -20.04811 -19.53027 -19.22837 -17.68063 -17.29353 -17.18038 -16.89492 -16.66156 -16.27521 -15.92389 -15.88709 -15.74891 -15.47631 -15.34866 -15.00905 -14.70477 -14.43930 -14.26498 -14.12965 -13.93172 -13.67062 -13.37238 -13.11506 -12.97600 -12.60844 -12.47333 -12.33854 -12.11727 -12.00999 -11.57218 -11.13721 -10.95324 -10.35881 -10.11128 -9.96608 -9.60587 -8.99372 -8.55408 -6.28866 -0.42713 0.32091 0.44468 0.46313 1.29593 1.33339 1.51354 1.79424 2.21393 2.24094 2.55500 2.81285 2.92758 2.99404 3.32106 3.58666 3.80263 3.85636 3.95180 4.00740 4.17330 4.32632 4.39795 4.45071 4.54499 4.61569 4.69912 4.76880 4.92137 5.02549 5.04608 5.20846 5.22742 5.26677 5.30501 5.36719 5.40536 5.54504 5.68643 5.78324 5.90771 6.05033 6.44125 6.77725 7.12283 7.44753 8.55493 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.004883 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.579877 B = 5733.029390 C = 7929.858902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.559 3.441 4 O -0.578 6.578 5 C -0.159 4.159 6 C -0.063 4.063 7 C -0.116 4.116 8 C 0.000 4.000 9 C -0.141 4.141 10 C -0.018 4.018 11 C -0.210 4.210 12 C 0.136 3.864 13 F -0.147 7.147 14 C -0.279 4.279 15 C 0.170 3.830 16 O -0.212 6.212 17 C -0.403 4.403 18 H 0.080 0.920 19 C 0.020 3.980 20 N -0.917 5.917 21 Si 0.956 3.044 22 H -0.250 1.250 23 H -0.276 1.276 24 H -0.256 1.256 25 C -0.121 4.121 26 C -0.081 4.081 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.415 0.585 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.119 0.881 36 H 0.286 0.714 37 H 0.118 0.882 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 5.947 -11.904 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.375 5.375 3 C 0.348 3.652 4 O -0.460 6.460 5 C -0.162 4.162 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.000 4.000 9 C -0.142 4.142 10 C -0.035 4.035 11 C -0.229 4.229 12 C 0.116 3.884 13 F -0.126 7.126 14 C -0.299 4.299 15 C 0.119 3.881 16 O -0.117 6.117 17 C -0.479 4.479 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.556 5.556 21 Si 0.777 3.223 22 H -0.174 1.174 23 H -0.201 1.201 24 H -0.180 1.180 25 C -0.139 4.139 26 C -0.099 4.099 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.252 0.748 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.193 0.807 34 H 0.183 0.817 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.741 6.454 -11.680 17.774 hybrid contribution 0.726 -1.059 0.872 1.552 sum -11.015 5.395 -10.808 16.348 Atomic orbital electron populations 1.21738 0.77927 1.04496 1.01814 1.45745 1.08884 1.08417 1.74461 1.18400 0.87451 0.83976 0.75419 1.90730 1.70651 1.32520 1.52068 1.19973 0.92421 0.95000 1.08764 1.21268 0.93833 0.97751 0.95336 1.21374 0.93521 0.97761 1.00695 1.18908 0.91229 0.93874 0.96027 1.18240 0.92171 1.04239 0.99599 1.21102 0.92595 0.94472 0.95377 1.21047 0.94832 1.04710 1.02295 1.17738 0.76206 0.97692 0.96738 1.91442 1.29871 1.95318 1.95978 1.21086 0.94905 1.08434 1.05506 1.19166 0.89701 0.90655 0.88600 1.83558 1.35448 1.49482 1.43250 1.20685 0.91832 1.16744 1.18616 0.90247 1.25221 1.04750 0.93801 0.94236 1.69720 1.38491 1.23091 1.24279 0.85418 0.78204 0.80261 0.78388 1.17433 1.20111 1.17984 1.21271 0.94387 0.98060 1.00156 1.21352 0.93796 0.97690 0.97075 0.86975 0.92984 0.92449 0.74811 0.84060 0.82799 0.80740 0.81723 0.86310 0.90421 0.86358 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.70 127.77 1.37 2.60 16 2 N -0.72 -13.86 5.66 -487.65 -2.76 -16.62 16 3 C 0.56 15.07 7.77 86.73 0.67 15.74 16 4 O -0.58 -19.24 16.33 -3.99 -0.07 -19.31 16 5 C -0.16 -4.31 5.88 -20.06 -0.12 -4.43 16 6 C -0.06 -1.68 9.58 22.49 0.22 -1.47 16 7 C -0.12 -3.05 9.49 22.45 0.21 -2.83 16 8 C 0.00 0.00 5.28 -20.00 -0.11 -0.11 16 9 C -0.14 -4.76 5.48 -19.93 -0.11 -4.87 16 10 C -0.02 -0.46 9.49 22.47 0.21 -0.25 16 11 C -0.21 -5.70 10.01 22.31 0.22 -5.47 16 12 C 0.14 4.79 7.30 22.41 0.16 4.95 16 13 F -0.15 -5.18 17.26 44.97 0.78 -4.40 16 14 C -0.28 -11.87 9.14 22.40 0.20 -11.67 16 15 C 0.17 7.27 6.56 22.83 0.15 7.42 16 16 O -0.21 -10.40 6.95 -21.22 -0.15 -10.55 16 17 C -0.40 -22.27 9.95 67.92 0.68 -21.60 16 18 H 0.08 4.70 5.44 -2.91 -0.02 4.69 16 19 C 0.02 1.08 5.49 84.84 0.47 1.55 16 20 N -0.92 -52.63 13.96 21.61 0.30 -52.33 16 21 Si 0.96 42.00 28.62 68.60 1.96 43.97 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.12 -3.82 8.76 22.45 0.20 -3.62 16 26 C -0.08 -2.12 9.52 22.49 0.21 -1.91 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.41 5.83 6.84 -92.71 -0.63 5.20 16 31 H 0.14 3.52 7.64 -2.91 -0.02 3.50 16 32 H 0.15 3.21 8.03 -2.91 -0.02 3.18 16 33 H 0.18 3.03 8.04 -2.91 -0.02 3.01 16 34 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.12 5.68 5.63 -2.91 -0.02 5.67 16 36 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.12 4.05 7.70 -2.91 -0.02 4.03 16 38 H 0.15 2.90 6.39 -2.91 -0.02 2.88 16 Total: -1.00 -69.09 336.99 5.20 -63.88 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.49 Total: 21.31 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.64 Total: -25.96 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -2.46 Total: -68.94 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.21 Total: -29.86 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.96 Total: 43.97 kcal Total: -69.09 5.20 -63.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240566889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.266 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds