Wall clock time and date at job start Tue Mar 31 2020 11:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48496 * 109.47280 * 85.18633 * 3 2 1 5 5 H 1.48507 * 109.47215 * 205.18443 * 3 2 1 6 6 H 1.48496 * 109.47352 * 325.18339 * 3 2 1 7 7 C 1.40046 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00342 * 197.51302 * 7 2 1 9 9 C 1.41320 * 119.99426 * 17.51098 * 7 2 1 10 10 C 1.40849 * 120.14272 * 24.96449 * 9 7 2 11 11 N 1.31873 * 119.96777 * 179.75059 * 10 9 7 12 12 C 1.32184 * 120.29427 * 0.52514 * 11 10 9 13 13 C 1.40055 * 120.28776 * 359.72767 * 12 11 10 14 14 C 1.48229 * 119.98713 * 179.97438 * 13 12 11 15 15 C 1.39817 * 120.02304 * 184.74619 * 14 13 12 16 16 C 1.37483 * 120.45423 * 179.75304 * 15 14 13 17 17 C 1.39369 * 120.21384 * 0.48700 * 16 15 14 18 18 N 1.38203 * 132.14252 * 179.76583 * 17 16 15 19 19 H 0.97001 * 124.82990 * 0.02562 * 18 17 16 20 20 C 1.38345 * 110.34263 * 180.02562 * 18 17 16 21 21 C 1.39175 * 132.31887 * 179.97438 * 20 18 17 22 22 C 1.37819 * 120.03815 * 179.97438 * 21 20 18 23 23 C 1.38647 * 120.58019 * 0.12821 * 22 21 20 24 24 C 1.37832 * 120.22842 * 359.91589 * 23 22 21 25 25 C 1.39264 * 119.77881 * 0.02562 * 24 23 22 26 26 C 1.40406 * 119.50271 * 359.79538 * 17 16 15 27 27 C 1.39027 * 120.18838 * 359.95982 * 26 17 16 28 28 N 1.32569 * 120.02614 * 0.02562 * 13 12 11 29 29 H 0.97003 * 119.99975 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.01866 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.85731 * 179.70678 * 12 11 10 32 32 H 1.08005 * 119.77160 * 0.02562 * 15 14 13 33 33 H 1.08001 * 119.89308 * 180.30271 * 16 15 14 34 34 H 1.07994 * 119.97750 * 0.03033 * 21 20 18 35 35 H 1.08000 * 119.70993 * 180.02562 * 22 21 20 36 36 H 1.07997 * 119.88655 * 179.97438 * 23 22 21 37 37 H 1.08004 * 120.10614 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.15724 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3871 2.1052 1.3951 5 1 3.5861 1.4129 -0.5958 6 1 1.4935 2.6211 -0.7993 7 6 2.0076 -1.2128 0.0005 8 1 3.0500 -1.2343 0.2820 9 6 1.3501 -2.4084 -0.3672 10 6 0.2208 -2.3648 -1.2079 11 7 -0.3871 -3.4831 -1.5528 12 6 0.0521 -4.6465 -1.1047 13 6 1.1708 -4.7028 -0.2639 14 6 1.6573 -6.0110 0.2352 15 6 2.7112 -6.0617 1.1526 16 6 3.1661 -7.2700 1.6252 17 6 2.5861 -8.4584 1.1854 18 7 2.8437 -9.7827 1.4855 19 1 3.5279 -10.0881 2.1015 20 6 1.9869 -10.6106 0.7825 21 6 1.8477 -11.9947 0.7382 22 6 0.8877 -12.5661 -0.0687 23 6 0.0551 -11.7736 -0.8441 24 6 0.1783 -10.4011 -0.8144 25 6 1.1435 -9.8107 -0.0024 26 6 1.5314 -8.4120 0.2597 27 6 1.0695 -7.1888 -0.2130 28 7 1.7941 -3.5865 0.0866 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1448 -1.4164 -1.5727 31 1 -0.4540 -5.5575 -1.3879 32 1 3.1682 -5.1452 1.4956 33 1 3.9776 -7.2983 2.3374 34 1 2.4918 -12.6212 1.3373 35 1 0.7840 -13.6407 -0.0987 36 1 -0.6931 -12.2332 -1.4727 37 1 -0.4715 -9.7856 -1.4188 38 1 0.2585 -7.1537 -0.9253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241811410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:16 Heat of formation + Delta-G solvation = 82.702970 kcal Electronic energy + Delta-G solvation = -23576.585557 eV Core-core repulsion = 20154.332162 eV Total energy + Delta-G solvation = -3422.253395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43036 -41.01383 -38.99906 -37.08645 -35.99099 -34.45505 -33.15142 -32.78630 -31.07789 -29.76676 -29.37220 -27.91097 -25.34101 -24.77166 -23.79635 -22.86976 -22.37571 -21.53019 -19.56392 -18.76507 -18.27457 -17.81683 -17.55370 -17.11615 -16.70105 -16.03632 -15.83405 -15.75348 -15.08235 -14.92120 -14.87802 -14.77276 -14.69170 -14.26404 -13.64761 -13.39597 -13.28540 -13.10852 -12.89845 -12.77008 -12.66846 -12.43260 -12.02621 -11.97333 -11.85124 -11.78136 -11.65580 -11.14982 -10.70314 -10.23808 -9.54385 -9.34313 -8.91866 -8.88739 -8.38035 -6.69579 -0.23206 -0.14619 0.54362 0.77510 0.98130 1.24010 1.40405 1.50926 1.58854 1.97538 2.16963 2.55482 2.81797 3.02130 3.34830 3.62794 3.67808 3.76321 3.91089 4.06022 4.18655 4.20641 4.28600 4.34173 4.41792 4.50090 4.53284 4.62381 4.74895 4.93430 4.96934 5.00776 5.05109 5.14563 5.21357 5.35237 5.40562 5.59408 5.63481 5.66479 5.68782 5.71023 5.93204 6.14995 6.17172 6.49166 6.54785 6.63276 7.17967 7.66450 8.13653 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.002712 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.179733 B =10323.815696 C =11143.793813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.258 1.258 7 C -0.450 4.450 8 H 0.089 0.911 9 C 0.202 3.798 10 C -0.022 4.022 11 N -0.451 5.451 12 C -0.105 4.105 13 C 0.141 3.859 14 C -0.080 4.080 15 C -0.059 4.059 16 C -0.139 4.139 17 C 0.142 3.858 18 N -0.604 5.604 19 H 0.431 0.569 20 C 0.126 3.874 21 C -0.144 4.144 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.080 4.080 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.045 4.045 28 N -0.543 5.543 29 H 0.301 0.699 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -19.979 2.594 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.180 4.180 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.179 1.179 6 H -0.182 1.182 7 C -0.483 4.483 8 H 0.107 0.893 9 C 0.074 3.926 10 C -0.191 4.191 11 N -0.163 5.163 12 C -0.262 4.262 13 C -0.002 4.002 14 C -0.083 4.083 15 C -0.079 4.079 16 C -0.160 4.160 17 C 0.036 3.964 18 N -0.215 5.215 19 H 0.272 0.728 20 C 0.021 3.979 21 C -0.165 4.165 22 C -0.101 4.101 23 C -0.170 4.170 24 C -0.098 4.098 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.065 4.065 28 N -0.263 5.263 29 H 0.112 0.888 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.073 -19.902 2.659 20.488 hybrid contribution 0.268 1.088 0.269 1.153 sum 4.341 -18.814 2.929 19.529 Atomic orbital electron populations 1.69761 1.09434 1.32151 1.32143 1.27017 0.95607 1.05090 0.90320 0.84879 0.78978 0.74193 0.79793 1.18286 1.17898 1.18220 1.19630 0.98586 0.90169 1.39925 0.89313 1.19681 0.91513 0.91876 0.89481 1.23664 0.98634 0.95965 1.00873 1.67829 1.28720 0.99201 1.20571 1.23126 1.00364 0.96284 1.06390 1.20852 0.92773 0.92825 0.93747 1.18350 0.99188 0.89833 1.00885 1.21039 0.94398 0.97917 0.94520 1.20189 1.03357 0.88109 1.04296 1.18370 0.96079 0.85343 0.96579 1.41525 1.34724 1.02240 1.42976 0.72834 1.18539 0.92077 0.92728 0.94521 1.20475 1.02635 0.89480 1.03917 1.21303 0.93344 1.01380 0.94117 1.21272 1.01662 0.92305 1.01751 1.20824 0.96111 0.95954 0.96952 1.18983 1.00952 0.90598 1.02859 1.18830 0.99911 0.92346 1.02019 1.20579 0.98515 0.89182 0.98177 1.68945 1.33658 0.98092 1.25581 0.88772 0.83213 0.82279 0.85391 0.82593 0.83183 0.82123 0.83226 0.85355 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.81 10.96 21.84 0.24 -40.57 16 2 C 0.04 1.87 5.14 85.30 0.44 2.31 16 3 Si 1.00 35.99 29.59 68.60 2.03 38.02 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.45 -24.29 9.29 23.47 0.22 -24.07 16 8 H 0.09 4.65 7.91 -2.91 -0.02 4.63 16 9 C 0.20 11.57 6.41 40.24 0.26 11.83 16 10 C -0.02 -1.26 9.88 85.33 0.84 -0.42 16 11 N -0.45 -24.39 10.47 -192.02 -2.01 -26.40 16 12 C -0.10 -5.14 10.61 85.08 0.90 -4.24 16 13 C 0.14 6.99 6.73 42.13 0.28 7.27 16 14 C -0.08 -3.25 5.87 -20.04 -0.12 -3.36 16 15 C -0.06 -2.14 9.55 22.47 0.21 -1.93 16 16 C -0.14 -3.93 10.05 22.36 0.22 -3.71 16 17 C 0.14 3.98 7.21 38.94 0.28 4.26 16 18 N -0.60 -12.81 6.12 -180.01 -1.10 -13.91 16 19 H 0.43 5.91 8.96 -92.71 -0.83 5.07 16 20 C 0.13 2.81 7.21 38.83 0.28 3.09 16 21 C -0.14 -2.29 10.07 22.40 0.23 -2.07 16 22 C -0.08 -1.14 10.01 22.27 0.22 -0.92 16 23 C -0.15 -2.49 10.03 22.27 0.22 -2.26 16 24 C -0.08 -1.80 10.09 22.42 0.23 -1.58 16 25 C -0.13 -3.51 6.35 -20.10 -0.13 -3.64 16 26 C -0.13 -4.00 6.34 -20.12 -0.13 -4.13 16 27 C -0.04 -1.58 9.45 22.66 0.21 -1.37 16 28 N -0.54 -29.72 9.55 -177.66 -1.70 -31.42 16 29 H 0.30 13.35 8.29 -92.71 -0.77 12.59 16 30 H 0.15 8.50 6.17 -2.91 -0.02 8.48 16 31 H 0.16 6.61 6.21 -2.91 -0.02 6.59 16 32 H 0.13 4.96 7.54 -2.91 -0.02 4.93 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.13 4.38 6.21 -2.91 -0.02 4.36 16 Total: -1.00 -69.42 329.86 2.45 -66.97 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.30 Total: 32.25 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.68 Total: -24.93 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.57 Total: -112.30 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -69.42 2.45 -66.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241811410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.671 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds