Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35615 * 117.00002 * 2 1 4 4 C 1.38905 * 119.94602 * 359.95097 * 3 2 1 5 5 C 1.37636 * 120.24708 * 180.02562 * 4 3 2 6 6 C 1.40108 * 120.13543 * 0.04494 * 5 4 3 7 7 C 1.46889 * 120.05754 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00205 * 173.29375 * 7 6 5 9 9 O 1.21289 * 119.99847 * 353.28773 * 7 6 5 10 10 C 1.39823 * 119.89274 * 359.97438 * 6 5 4 11 11 C 1.38783 * 119.75286 * 359.97438 * 10 6 5 12 12 C 1.48347 * 120.07025 * 179.72753 * 11 10 6 13 13 C 1.39007 * 120.42286 * 64.71573 * 12 11 10 14 14 C 1.40956 * 118.13060 * 179.74447 * 13 12 11 15 15 C 1.41377 * 120.57432 * 180.28418 * 14 13 12 16 16 H 1.07993 * 120.00363 * 203.25754 * 15 14 13 17 17 C 1.39894 * 119.99762 * 23.26154 * 15 14 13 18 18 N 1.30871 * 120.00273 * 15.14835 * 17 15 14 19 19 Si 1.86797 * 120.00041 * 195.14212 * 17 15 14 20 20 H 1.48505 * 109.47068 * 60.00437 * 19 17 15 21 21 H 1.48501 * 109.47359 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47501 * 300.00442 * 19 17 15 23 23 C 1.40802 * 118.85267 * 0.51608 * 14 13 12 24 24 N 1.31502 * 120.70151 * 359.74943 * 23 14 13 25 25 C 1.32158 * 122.07647 * 359.97438 * 24 23 14 26 26 F 1.35102 * 119.45962 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.46552 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47284 * 299.99865 * 1 2 3 29 29 H 1.08994 * 109.47303 * 60.00498 * 1 2 3 30 30 H 1.08002 * 119.87719 * 0.02562 * 4 3 2 31 31 H 1.08011 * 119.93428 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47489 * 5.26249 * 8 7 6 33 33 H 1.08998 * 109.47365 * 125.26378 * 8 7 6 34 34 H 1.09005 * 109.47239 * 245.27036 * 8 7 6 35 35 H 1.07998 * 120.12587 * 180.02562 * 10 6 5 36 36 H 1.08007 * 120.93354 * 0.02562 * 13 12 11 37 37 H 0.96999 * 119.99880 * 180.02562 * 18 17 15 38 38 H 1.08007 * 119.64736 * 179.77109 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2870 2.3726 -0.0010 5 6 1.9054 3.6022 -0.0016 6 6 3.3040 3.6862 -0.0020 7 6 3.9622 4.9994 -0.0020 8 6 5.4586 5.0922 0.1499 9 8 3.3012 6.0090 -0.1244 10 6 4.0722 2.5179 -0.0014 11 6 3.4439 1.2805 0.0002 12 6 4.2521 0.0365 -0.0052 13 6 5.0703 -0.2761 1.0743 14 6 5.8129 -1.4730 1.0206 15 6 6.6567 -1.8444 2.0925 16 1 7.4822 -2.5192 1.9211 17 6 6.4221 -1.3378 3.3752 18 7 5.2764 -0.7709 3.6555 19 14 7.7443 -1.4707 4.6880 20 1 8.9639 -0.7536 4.2367 21 1 7.2517 -0.8624 5.9500 22 1 8.0687 -2.9009 4.9210 23 6 5.7037 -2.2898 -0.1211 24 7 4.9194 -1.9469 -1.1194 25 6 4.2048 -0.8354 -1.1007 26 9 3.4158 -0.5349 -2.1554 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 0.2087 2.3127 -0.0014 31 1 1.3114 4.5043 -0.0019 32 1 5.8865 4.0897 0.1525 33 1 5.8735 5.6622 -0.6814 34 1 5.6982 5.5918 1.0886 35 1 5.1505 2.5783 -0.0013 36 1 5.1316 0.3774 1.9320 37 1 5.1139 -0.4193 4.5448 38 1 6.2699 -3.2078 -0.1773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242270304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = -68.164128 kcal Electronic energy + Delta-G solvation = -25744.142059 eV Core-core repulsion = 21852.284599 eV Total energy + Delta-G solvation = -3891.857460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.51089 -40.24350 -39.04520 -38.23993 -36.77832 -34.20242 -32.66851 -31.54437 -30.38345 -28.86408 -28.68812 -27.18804 -25.53838 -23.25433 -23.10728 -21.72325 -20.96993 -19.45797 -18.12765 -17.33021 -16.61380 -16.30108 -16.23851 -15.91729 -15.49470 -15.08930 -14.83811 -14.65530 -14.57999 -14.52367 -13.81925 -13.36451 -13.18117 -12.78732 -12.56472 -12.39781 -12.27658 -12.15876 -12.00529 -11.98766 -11.77876 -11.67140 -11.34893 -11.22258 -10.91111 -10.86168 -10.72327 -10.14121 -9.66707 -9.51853 -8.98277 -8.46885 -8.38443 -7.92231 -7.53827 -7.00783 -4.63955 0.88823 1.44099 2.28977 2.56457 2.69220 2.93761 2.95255 3.02713 3.42969 3.72905 3.93511 4.20916 4.35106 4.82251 4.90334 5.07075 5.13756 5.18562 5.23376 5.26725 5.34065 5.43953 5.46997 5.54991 5.58126 5.75285 5.91998 6.03215 6.17992 6.31757 6.42660 6.48881 6.51967 6.73566 6.84194 6.92507 6.94309 7.44505 7.54867 7.63272 7.63539 7.76333 8.20603 8.47007 8.47908 9.22512 9.89367 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.005239 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.413005 B = 5343.510550 C = 6612.397130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.291 6.291 3 C 0.182 3.818 4 C -0.228 4.228 5 C -0.025 4.025 6 C -0.220 4.220 7 C 0.405 3.595 8 C -0.204 4.204 9 O -0.477 6.477 10 C -0.021 4.021 11 C -0.059 4.059 12 C -0.095 4.095 13 C -0.097 4.097 14 C 0.053 3.947 15 C -0.440 4.440 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.786 5.786 19 Si 0.916 3.084 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.263 1.263 23 C 0.011 3.989 24 N -0.492 5.492 25 C 0.177 3.823 26 F -0.145 7.145 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.287 0.713 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 6.384 -0.795 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C 0.134 3.866 4 C -0.247 4.247 5 C -0.043 4.043 6 C -0.221 4.221 7 C 0.286 3.714 8 C -0.261 4.261 9 O -0.355 6.355 10 C -0.039 4.039 11 C -0.060 4.060 12 C -0.098 4.098 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.469 4.469 16 H 0.105 0.895 17 C -0.147 4.147 18 N -0.411 5.411 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.150 4.150 24 N -0.204 5.204 25 C 0.023 3.977 26 F -0.125 7.125 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.294 6.287 -1.418 7.745 hybrid contribution 0.072 0.424 1.258 1.330 sum -4.222 6.712 -0.160 7.931 Atomic orbital electron populations 1.23107 0.78759 1.04092 1.01056 1.86217 1.20916 1.26357 1.86696 1.19424 0.91684 0.84342 0.91113 1.21073 1.00054 0.91902 1.11687 1.21052 0.93429 0.97157 0.92677 1.20214 0.94308 0.94487 1.13113 1.22304 0.91295 0.87427 0.70380 1.22258 0.94259 1.05092 1.04518 1.90496 1.68212 1.38521 1.38267 1.21430 0.99979 0.89612 0.92918 1.18028 0.89385 0.93600 1.05033 1.18863 1.01018 0.94216 0.95744 1.21798 0.96975 0.97138 0.96282 1.18466 0.92360 0.90895 0.93387 1.19524 1.11489 1.24179 0.91719 0.89508 1.26009 0.95737 0.92813 1.00150 1.69762 1.21110 1.27368 1.22818 0.86220 0.81078 0.79949 0.78787 1.18545 1.20146 1.18700 1.22289 1.01242 1.00074 0.91403 1.66281 1.07285 1.15953 1.30847 1.17498 0.99174 0.95121 0.85882 1.91397 1.72313 1.92574 1.56209 0.88190 0.92644 0.92645 0.84996 0.85080 0.89470 0.89086 0.88768 0.84141 0.84020 0.90224 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.30 16 2 O -0.29 -5.36 9.63 -18.54 -0.18 -5.54 16 3 C 0.18 3.30 6.49 -38.63 -0.25 3.05 16 4 C -0.23 -3.41 9.00 -39.55 -0.36 -3.77 16 5 C -0.02 -0.37 9.58 -39.10 -0.37 -0.74 16 6 C -0.22 -3.40 5.87 -105.10 -0.62 -4.02 16 7 C 0.41 5.80 7.20 -30.81 -0.22 5.58 16 8 C -0.20 -2.22 10.19 36.00 0.37 -1.85 16 9 O -0.48 -7.94 17.10 5.55 0.09 -7.84 16 10 C -0.02 -0.36 9.11 -38.79 -0.35 -0.71 16 11 C -0.06 -1.16 5.03 -104.83 -0.53 -1.69 16 12 C -0.09 -2.15 4.94 -104.76 -0.52 -2.67 16 13 C -0.10 -2.29 8.50 -38.27 -0.33 -2.62 16 14 C 0.05 1.30 5.60 -106.70 -0.60 0.71 16 15 C -0.44 -10.34 9.09 -37.77 -0.34 -10.69 16 16 H 0.09 1.91 7.89 -52.49 -0.41 1.50 16 17 C 0.07 1.61 5.23 -17.34 -0.09 1.52 16 18 N -0.79 -18.30 10.76 55.54 0.60 -17.71 16 19 Si 0.92 16.73 29.58 -169.99 -5.03 11.70 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 C 0.01 0.26 10.96 -16.72 -0.18 0.08 16 24 N -0.49 -12.20 10.33 -12.58 -0.13 -12.33 16 25 C 0.18 4.29 8.09 -16.72 -0.14 4.16 16 26 F -0.15 -3.42 16.63 2.25 0.04 -3.38 16 27 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 28 H 0.05 0.59 7.65 -51.93 -0.40 0.20 16 29 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.13 1.56 6.27 -52.49 -0.33 1.23 16 31 H 0.13 1.75 7.65 -52.48 -0.40 1.35 16 32 H 0.09 0.90 5.62 -51.93 -0.29 0.61 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.14 2.10 5.94 -52.49 -0.31 1.78 16 36 H 0.14 3.40 6.07 -52.48 -0.32 3.08 16 37 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 38 H 0.14 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -29.11 335.55 -6.77 -35.88 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.69 Total: 6.53 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.54 Total: -12.36 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.47 Total: -30.03 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.08 Total: -13.38 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.11 -6.77 -35.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242270304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.284 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds