Wall clock time and date at job start Tue Mar 31 2020 11:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35615 * 117.00002 * 2 1 4 4 C 1.38905 * 119.94602 * 359.95097 * 3 2 1 5 5 C 1.37636 * 120.24708 * 180.02562 * 4 3 2 6 6 C 1.40108 * 120.13543 * 0.04494 * 5 4 3 7 7 C 1.46889 * 120.05754 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00205 * 173.29375 * 7 6 5 9 9 O 1.21289 * 119.99847 * 353.28773 * 7 6 5 10 10 C 1.39823 * 119.89274 * 359.97438 * 6 5 4 11 11 C 1.38783 * 119.75286 * 359.97438 * 10 6 5 12 12 C 1.48347 * 120.07025 * 179.72753 * 11 10 6 13 13 C 1.39007 * 120.42286 * 64.71573 * 12 11 10 14 14 C 1.40956 * 118.13060 * 179.74447 * 13 12 11 15 15 C 1.41377 * 120.57432 * 180.28418 * 14 13 12 16 16 H 1.07993 * 120.00363 * 203.25754 * 15 14 13 17 17 C 1.39894 * 119.99762 * 23.26154 * 15 14 13 18 18 N 1.30871 * 120.00273 * 15.14835 * 17 15 14 19 19 Si 1.86797 * 120.00041 * 195.14212 * 17 15 14 20 20 H 1.48505 * 109.47068 * 60.00437 * 19 17 15 21 21 H 1.48501 * 109.47359 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47501 * 300.00442 * 19 17 15 23 23 C 1.40802 * 118.85267 * 0.51608 * 14 13 12 24 24 N 1.31502 * 120.70151 * 359.74943 * 23 14 13 25 25 C 1.32158 * 122.07647 * 359.97438 * 24 23 14 26 26 F 1.35102 * 119.45962 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.46552 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47284 * 299.99865 * 1 2 3 29 29 H 1.08994 * 109.47303 * 60.00498 * 1 2 3 30 30 H 1.08002 * 119.87719 * 0.02562 * 4 3 2 31 31 H 1.08011 * 119.93428 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47489 * 5.26249 * 8 7 6 33 33 H 1.08998 * 109.47365 * 125.26378 * 8 7 6 34 34 H 1.09005 * 109.47239 * 245.27036 * 8 7 6 35 35 H 1.07998 * 120.12587 * 180.02562 * 10 6 5 36 36 H 1.08007 * 120.93354 * 0.02562 * 13 12 11 37 37 H 0.96999 * 119.99880 * 180.02562 * 18 17 15 38 38 H 1.08007 * 119.64736 * 179.77109 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2870 2.3726 -0.0010 5 6 1.9054 3.6022 -0.0016 6 6 3.3040 3.6862 -0.0020 7 6 3.9622 4.9994 -0.0020 8 6 5.4586 5.0922 0.1499 9 8 3.3012 6.0090 -0.1244 10 6 4.0722 2.5179 -0.0014 11 6 3.4439 1.2805 0.0002 12 6 4.2521 0.0365 -0.0052 13 6 5.0703 -0.2761 1.0743 14 6 5.8129 -1.4730 1.0206 15 6 6.6567 -1.8444 2.0925 16 1 7.4822 -2.5192 1.9211 17 6 6.4221 -1.3378 3.3752 18 7 5.2764 -0.7709 3.6555 19 14 7.7443 -1.4707 4.6880 20 1 8.9639 -0.7536 4.2367 21 1 7.2517 -0.8624 5.9500 22 1 8.0687 -2.9009 4.9210 23 6 5.7037 -2.2898 -0.1211 24 7 4.9194 -1.9469 -1.1194 25 6 4.2048 -0.8354 -1.1007 26 9 3.4158 -0.5349 -2.1554 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 0.2087 2.3127 -0.0014 31 1 1.3114 4.5043 -0.0019 32 1 5.8865 4.0897 0.1525 33 1 5.8735 5.6622 -0.6814 34 1 5.6982 5.5918 1.0886 35 1 5.1505 2.5783 -0.0013 36 1 5.1316 0.3774 1.9320 37 1 5.1139 -0.4193 4.5448 38 1 6.2699 -3.2078 -0.1773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242270304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:36 Heat of formation + Delta-G solvation = -83.769564 kcal Electronic energy + Delta-G solvation = -25744.818761 eV Core-core repulsion = 21852.284599 eV Total energy + Delta-G solvation = -3892.534162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.34845 -41.51386 -40.27587 -39.95527 -38.05366 -35.97673 -34.18296 -32.67679 -32.17700 -30.21470 -29.90024 -28.27224 -27.34297 -24.77390 -24.35134 -23.48374 -22.42325 -20.73272 -19.50904 -18.89058 -18.42611 -17.81177 -17.53234 -17.36385 -16.80386 -16.62650 -16.35889 -15.96080 -15.91426 -15.67996 -15.25746 -14.87025 -14.50686 -14.19148 -14.05005 -13.86711 -13.77929 -13.59416 -13.54563 -13.19752 -13.02225 -12.99170 -12.80018 -12.69842 -12.35817 -12.08371 -12.04292 -11.71419 -11.20860 -10.83383 -10.47727 -10.28334 -9.91160 -9.52640 -9.11609 -8.72905 -6.46757 -0.33983 0.10084 0.60967 0.87110 1.37779 1.44412 1.53550 1.57114 2.19512 2.28338 2.58863 2.69484 3.13060 3.32162 3.50049 3.55433 3.76491 3.98652 4.12726 4.15872 4.28927 4.31921 4.34107 4.45533 4.59045 4.64231 4.66590 4.69209 4.83576 4.92023 5.03040 5.04524 5.14930 5.21223 5.24475 5.30710 5.57677 5.66667 5.80307 5.95247 6.33166 6.42508 6.51254 6.65809 6.69003 7.37522 8.19614 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.005239 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.413005 B = 5343.510550 C = 6612.397130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.168 3.832 4 C -0.218 4.218 5 C -0.022 4.022 6 C -0.225 4.225 7 C 0.409 3.591 8 C -0.201 4.201 9 O -0.501 6.501 10 C -0.017 4.017 11 C -0.101 4.101 12 C -0.078 4.078 13 C -0.114 4.114 14 C 0.035 3.965 15 C -0.459 4.459 16 H 0.096 0.904 17 C 0.037 3.963 18 N -0.810 5.810 19 Si 0.989 3.011 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.005 4.005 24 N -0.507 5.507 25 C 0.149 3.851 26 F -0.147 7.147 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.295 0.705 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 7.640 0.404 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.121 3.879 4 C -0.237 4.237 5 C -0.040 4.040 6 C -0.226 4.226 7 C 0.291 3.709 8 C -0.258 4.258 9 O -0.381 6.381 10 C -0.035 4.035 11 C -0.102 4.102 12 C -0.082 4.082 13 C -0.139 4.139 14 C 0.031 3.969 15 C -0.487 4.487 16 H 0.114 0.886 17 C -0.180 4.180 18 N -0.435 5.435 19 Si 0.809 3.191 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.182 1.182 23 C -0.167 4.167 24 N -0.219 5.219 25 C -0.005 4.005 26 F -0.127 7.127 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.183 0.817 31 H 0.168 0.832 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.205 7.540 -0.240 8.637 hybrid contribution -0.054 0.047 0.908 0.910 sum -4.259 7.588 0.668 8.727 Atomic orbital electron populations 1.23444 0.76078 1.05562 1.02866 1.86161 1.23917 1.27092 1.86867 1.19599 0.91444 0.85334 0.91532 1.21356 1.01525 0.90653 1.10120 1.21392 0.93505 0.97869 0.91269 1.20448 0.94808 0.94696 1.12674 1.22628 0.92696 0.86346 0.69217 1.22291 0.91536 1.05894 1.06039 1.90491 1.69058 1.38938 1.39617 1.21521 1.00698 0.89110 0.92205 1.18142 0.90328 0.93212 1.08519 1.19009 0.99931 0.94902 0.94354 1.21779 0.98265 0.97275 0.96616 1.18796 0.92812 0.91343 0.93991 1.19873 1.11688 1.24822 0.92324 0.88551 1.26867 0.97572 0.91768 1.01822 1.69817 1.22669 1.27158 1.23834 0.85122 0.78069 0.80068 0.75858 1.17921 1.19464 1.18222 1.22549 1.01830 1.00877 0.91397 1.66237 1.07698 1.16575 1.31411 1.17739 1.00144 0.95897 0.86674 1.91368 1.72419 1.92622 1.56263 0.87116 0.90752 0.90741 0.81695 0.83151 0.89107 0.87378 0.87114 0.83093 0.84591 0.89402 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.80 113.37 1.11 1.45 16 2 O -0.33 -12.16 9.63 -89.26 -0.86 -13.02 16 3 C 0.17 6.07 6.49 22.89 0.15 6.22 16 4 C -0.22 -6.12 9.00 22.29 0.20 -5.92 16 5 C -0.02 -0.62 9.58 22.58 0.22 -0.40 16 6 C -0.23 -6.67 5.87 -20.18 -0.12 -6.78 16 7 C 0.41 10.99 7.20 27.95 0.20 11.19 16 8 C -0.20 -3.93 10.19 71.23 0.73 -3.21 16 9 O -0.50 -15.79 17.10 -3.06 -0.05 -15.85 16 10 C -0.02 -0.58 9.11 22.78 0.21 -0.37 16 11 C -0.10 -4.01 5.03 -20.00 -0.10 -4.11 16 12 C -0.08 -3.68 4.94 -19.95 -0.10 -3.78 16 13 C -0.11 -5.58 8.50 23.12 0.20 -5.38 16 14 C 0.04 1.76 5.60 -21.21 -0.12 1.64 16 15 C -0.46 -21.66 9.09 23.44 0.21 -21.44 16 16 H 0.10 4.23 7.89 -2.91 -0.02 4.20 16 17 C 0.04 1.64 5.23 85.24 0.45 2.08 16 18 N -0.81 -37.67 10.76 21.82 0.23 -37.44 16 19 Si 0.99 33.13 29.58 68.60 2.03 35.16 16 20 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 21 H -0.27 -8.71 7.11 99.48 0.71 -8.01 16 22 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 23 C -0.01 -0.26 10.96 85.37 0.94 0.68 16 24 N -0.51 -25.97 10.33 -193.71 -2.00 -27.97 16 25 C 0.15 7.45 8.09 85.09 0.69 8.14 16 26 F -0.15 -7.14 16.63 44.97 0.75 -6.40 16 27 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.07 1.44 7.65 -2.39 -0.02 1.42 16 29 H 0.07 1.44 7.65 -2.39 -0.02 1.42 16 30 H 0.17 3.40 6.27 -2.91 -0.02 3.38 16 31 H 0.15 3.60 7.65 -2.90 -0.02 3.57 16 32 H 0.09 1.71 5.62 -2.39 -0.01 1.70 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.15 4.50 5.94 -2.91 -0.02 4.48 16 36 H 0.14 6.71 6.07 -2.91 -0.02 6.70 16 37 H 0.29 12.38 8.30 -92.71 -0.77 11.61 16 38 H 0.15 6.71 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -63.86 335.55 6.07 -57.78 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 1.12 Total: 27.72 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.85 Total: -19.99 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -1.77 Total: -65.41 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.91 Total: -28.86 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.75 Total: -6.40 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 2.03 Total: 35.16 kcal Total: -63.86 6.07 -57.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242270304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.988 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds