Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47026 * 266.36812 * 3 2 1 5 5 H 1.48492 * 109.47289 * 26.36822 * 3 2 1 6 6 H 1.48497 * 109.46994 * 146.36945 * 3 2 1 7 7 C 1.39691 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00172 * 349.99587 * 7 2 1 9 9 C 1.40963 * 119.99707 * 170.00010 * 7 2 1 10 10 C 1.38996 * 126.92852 * 335.48449 * 9 7 2 11 11 N 1.35589 * 109.23873 * 179.97438 * 10 9 7 12 12 H 0.96997 * 124.70895 * 180.02562 * 11 10 9 13 13 C 1.38181 * 110.59367 * 0.05255 * 11 10 9 14 14 C 1.39166 * 132.73803 * 179.97438 * 13 11 10 15 15 C 1.37996 * 120.24425 * 179.97438 * 14 13 11 16 16 C 1.38359 * 120.77737 * 359.97438 * 15 14 13 17 17 C 1.39146 * 120.10052 * 359.97438 * 16 15 14 18 18 C 1.48152 * 120.28501 * 179.74565 * 17 16 15 19 19 C 1.40496 * 119.74046 * 123.13819 * 18 17 16 20 20 C 1.35895 * 120.95835 * 179.71070 * 19 18 17 21 21 C 1.40396 * 119.92141 * 0.56127 * 20 19 18 22 22 N 1.33874 * 121.81775 * 179.69857 * 21 20 19 23 23 C 1.31137 * 120.31148 * 180.02562 * 22 21 20 24 24 N 1.32512 * 122.88071 * 0.02562 * 23 22 21 25 25 C 1.31770 * 121.59593 * 359.97438 * 24 23 22 26 26 C 1.40747 * 118.34905 * 0.02562 * 25 24 23 27 27 C 1.38449 * 119.74158 * 303.41918 * 18 17 16 28 28 C 1.40231 * 107.88574 * 359.95172 * 13 11 10 29 29 H 0.96995 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.07997 * 125.38533 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.87583 * 359.97438 * 14 13 11 32 32 H 1.08005 * 119.61444 * 180.02562 * 15 14 13 33 33 H 1.08005 * 119.94576 * 180.02562 * 16 15 14 34 34 H 1.07994 * 119.51968 * 0.02562 * 19 18 17 35 35 H 1.08004 * 120.04156 * 180.28183 * 20 19 18 36 36 H 1.08004 * 118.56367 * 180.02562 * 23 22 21 37 37 H 1.08000 * 120.82948 * 180.02562 * 25 24 23 38 38 H 1.08003 * 120.35704 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.5691 2.0021 -1.3973 5 1 1.4061 2.6736 0.6218 6 1 3.5018 1.4635 0.7754 7 6 2.0092 -1.2098 0.0005 8 1 1.4815 -2.1378 0.1634 9 6 3.4028 -1.2192 -0.2114 10 6 4.1524 -0.2579 -0.8793 11 7 5.4577 -0.6247 -0.8720 12 1 6.1770 -0.1146 -1.2760 13 6 5.6212 -1.8264 -0.2097 14 6 6.7386 -2.6093 0.0644 15 6 6.6043 -3.7919 0.7627 16 6 5.3632 -4.2182 1.2012 17 6 4.2305 -3.4531 0.9410 18 6 2.8988 -3.9085 1.4037 19 6 2.1289 -3.0787 2.2360 20 6 0.9018 -3.4691 2.6702 21 6 0.3929 -4.7230 2.2962 22 7 -0.8083 -5.1482 2.7067 23 6 -1.2547 -6.3254 2.3398 24 7 -0.5642 -7.1460 1.5615 25 6 0.6284 -6.8229 1.1035 26 6 1.1652 -5.5719 1.4609 27 6 2.4253 -5.1508 1.0174 28 6 4.3592 -2.2508 0.2303 29 1 -0.4850 0.8400 0.0004 30 1 3.7576 0.6394 -1.3324 31 1 7.7144 -2.2902 -0.2708 32 1 7.4784 -4.3914 0.9701 33 1 5.2737 -5.1459 1.7470 34 1 2.5158 -2.1145 2.5309 35 1 0.3206 -2.8176 3.3059 36 1 -2.2278 -6.6400 2.6871 37 1 1.1802 -7.5012 0.4696 38 1 3.0214 -5.7886 0.3815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242513893.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = 104.615786 kcal Electronic energy + Delta-G solvation = -24896.940460 eV Core-core repulsion = 21475.637275 eV Total energy + Delta-G solvation = -3421.303184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22358 -41.58962 -38.90351 -37.28424 -35.39117 -35.06540 -33.41442 -32.15251 -31.59224 -29.94216 -29.46129 -26.61684 -25.81523 -25.13086 -23.53865 -23.04206 -22.28569 -21.26202 -19.71778 -19.14704 -18.25354 -18.21708 -17.40911 -16.86803 -16.27420 -16.06306 -15.89548 -15.82341 -15.40159 -15.06414 -14.90350 -14.87717 -14.69561 -14.35664 -13.80714 -13.44835 -13.25742 -13.07377 -12.87172 -12.65846 -12.47755 -12.25568 -12.16457 -12.00509 -11.93505 -11.55695 -11.47404 -11.05149 -10.28808 -10.19198 -10.02132 -9.27492 -8.85563 -8.62856 -8.41627 -6.06939 -0.72515 -0.30300 0.39327 0.93059 0.98414 1.20524 1.34389 1.47006 1.93133 2.07968 2.19338 2.71064 3.01710 3.12979 3.23057 3.26503 3.42428 3.49436 3.64272 3.78286 4.14426 4.20346 4.26115 4.32605 4.44621 4.59240 4.59788 4.70075 4.80971 4.88558 4.96018 5.02033 5.07970 5.22280 5.32605 5.41260 5.45927 5.51341 5.69063 5.80825 5.90966 5.94698 6.06733 6.12647 6.47685 6.54715 6.84310 7.05748 7.13905 7.19427 8.46793 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.005847 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.705340 B = 4787.596083 C = 6702.101015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.036 3.964 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.434 4.434 8 H 0.061 0.939 9 C -0.001 4.001 10 C -0.155 4.155 11 N -0.579 5.579 12 H 0.417 0.583 13 C 0.093 3.907 14 C -0.144 4.144 15 C -0.093 4.093 16 C -0.153 4.153 17 C -0.014 4.014 18 C -0.034 4.034 19 C -0.026 4.026 20 C -0.127 4.127 21 C 0.139 3.861 22 N -0.536 5.536 23 C 0.283 3.717 24 N -0.543 5.543 25 C 0.208 3.792 26 C -0.175 4.175 27 C -0.064 4.064 28 C -0.146 4.146 29 H 0.281 0.719 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.221 0.779 37 H 0.217 0.783 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.454 -9.525 1.771 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.175 1.175 7 C -0.467 4.467 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.278 4.278 11 N -0.183 5.183 12 H 0.255 0.745 13 C -0.017 4.017 14 C -0.166 4.166 15 C -0.111 4.111 16 C -0.173 4.173 17 C -0.015 4.015 18 C -0.034 4.034 19 C -0.047 4.047 20 C -0.146 4.146 21 C 0.012 3.988 22 N -0.250 5.250 23 C -0.005 4.005 24 N -0.256 5.256 25 C 0.029 3.971 26 C -0.179 4.179 27 C -0.084 4.084 28 C -0.152 4.152 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.237 0.763 37 H 0.234 0.766 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.238 -9.446 2.133 13.383 hybrid contribution 0.391 2.109 -0.519 2.207 sum 9.629 -7.337 1.614 12.212 Atomic orbital electron populations 1.69824 1.08701 1.29871 1.42804 1.26529 0.95243 1.03299 0.92250 0.85630 0.78881 0.77519 0.79224 1.18897 1.22386 1.17548 1.18594 0.90348 0.94275 1.43470 0.92068 1.18388 0.92368 0.92933 0.97064 1.21780 0.84337 1.05460 1.16246 1.40850 1.07543 1.19139 1.50807 0.74521 1.18513 0.95386 0.88756 0.99070 1.20360 0.95803 0.96019 1.04369 1.20974 0.97709 0.95378 0.97086 1.21079 0.91192 1.00665 1.04329 1.18232 0.92212 0.93264 0.97763 1.18967 0.94476 0.93795 0.96192 1.20963 0.93090 0.97632 0.93009 1.20536 0.96112 0.94907 1.03048 1.19106 0.90579 0.94827 0.94267 1.68698 1.13543 1.17570 1.25229 1.25433 1.00115 0.85061 0.89924 1.68392 1.08564 1.35834 1.12827 1.24322 0.90025 0.91637 0.91114 1.19644 0.97813 0.98343 1.02124 1.21459 0.93542 0.95320 0.98116 1.19455 0.93479 0.97337 1.04974 0.90960 0.83788 0.84100 0.82315 0.83984 0.86569 0.85685 0.76262 0.76621 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.56 13.94 21.79 0.30 -50.26 16 2 C 0.04 1.93 5.51 85.16 0.47 2.40 16 3 Si 0.96 43.26 24.56 68.60 1.68 44.95 16 4 H -0.26 -11.08 6.58 99.48 0.65 -10.43 16 5 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.25 6.64 99.48 0.66 -10.59 16 7 C -0.43 -23.72 8.01 23.29 0.19 -23.54 16 8 H 0.06 3.64 5.99 -2.91 -0.02 3.62 16 9 C 0.00 -0.04 5.57 -20.00 -0.11 -0.16 16 10 C -0.16 -6.84 9.21 84.29 0.78 -6.06 16 11 N -0.58 -20.92 5.99 -184.94 -1.11 -22.03 16 12 H 0.42 11.45 8.96 -92.71 -0.83 10.62 16 13 C 0.09 3.39 7.23 38.85 0.28 3.67 16 14 C -0.14 -3.98 10.06 22.44 0.23 -3.75 16 15 C -0.09 -2.24 10.00 22.24 0.22 -2.02 16 16 C -0.15 -4.28 9.61 22.52 0.22 -4.06 16 17 C -0.01 -0.52 5.38 -19.94 -0.11 -0.63 16 18 C -0.03 -1.27 4.59 -20.04 -0.09 -1.36 16 19 C -0.03 -1.06 6.66 22.28 0.15 -0.91 16 20 C -0.13 -5.23 9.98 22.25 0.22 -5.01 16 21 C 0.14 5.36 6.62 40.28 0.27 5.63 16 22 N -0.54 -19.81 10.44 -193.56 -2.02 -21.83 16 23 C 0.28 8.48 12.22 180.86 2.21 10.69 16 24 N -0.54 -15.39 10.39 -198.63 -2.06 -17.45 16 25 C 0.21 5.42 11.16 85.32 0.95 6.37 16 26 C -0.18 -5.71 5.74 -21.30 -0.12 -5.83 16 27 C -0.06 -2.00 9.40 22.76 0.21 -1.79 16 28 C -0.15 -6.23 6.07 -19.88 -0.12 -6.35 16 29 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 30 H 0.15 6.26 4.32 -2.91 -0.01 6.25 16 31 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.12 5.11 7.84 -2.91 -0.02 5.09 16 35 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 36 H 0.22 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 38 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -70.21 320.50 2.84 -67.38 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.20 Total: 31.94 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 5.84 Total: -32.69 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.89 Total: -111.57 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.68 Total: 44.95 kcal Total: -70.21 2.84 -67.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242513893.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.991 kcal (2) G-P(sol) polarization free energy of solvation -70.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds