Wall clock time and date at job start Tue Mar 31 2020 11:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41600 * 113.99798 * 2 1 4 4 C 1.29357 * 120.00082 * 179.97438 * 3 2 1 5 5 C 1.47587 * 120.00329 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.10801 * 180.25818 * 5 4 3 7 7 C 1.39091 * 119.74364 * 180.27117 * 6 5 4 8 8 C 1.48301 * 120.02146 * 179.74814 * 7 6 5 9 9 C 1.39291 * 120.15770 * 309.72832 * 8 7 6 10 10 C 1.38017 * 119.94484 * 180.02562 * 9 8 7 11 11 C 1.38447 * 120.26801 * 359.97033 * 10 9 8 12 12 C 1.38110 * 120.32388 * 0.02991 * 11 10 9 13 13 C 1.38753 * 120.05202 * 359.97438 * 12 11 10 14 14 O 1.35667 * 120.13491 * 180.02562 * 13 12 11 15 15 C 1.34809 * 117.00203 * 354.40782 * 14 13 12 16 16 H 1.08000 * 119.99879 * 5.05677 * 15 14 13 17 17 C 1.38642 * 119.99920 * 185.06423 * 15 14 13 18 18 N 1.31558 * 120.00421 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00146 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46866 * 59.99775 * 19 17 15 21 21 H 1.48497 * 109.47206 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46910 * 300.00196 * 19 17 15 23 23 C 1.39542 * 119.95337 * 359.47163 * 7 6 5 24 24 C 1.38016 * 120.21050 * 0.25795 * 23 7 6 25 25 C 1.38350 * 120.25587 * 0.02562 * 24 23 7 26 26 F 1.35102 * 119.97227 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47298 * 299.99708 * 1 2 3 28 28 H 1.09003 * 109.47788 * 59.99628 * 1 2 3 29 29 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99874 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.12606 * 0.04686 * 6 5 4 32 32 H 1.07996 * 120.02523 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.86708 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.83376 * 179.75293 * 11 10 9 35 35 H 1.08002 * 119.97327 * 179.97438 * 12 11 10 36 36 H 0.97004 * 120.00446 * 179.97438 * 18 17 15 37 37 H 1.08005 * 119.89176 * 180.26883 * 23 7 6 38 38 H 1.08002 * 119.86854 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0048 1.2936 0.0000 4 6 3.2913 1.4289 0.0005 5 6 3.8916 2.7771 0.0011 6 6 5.2780 2.9255 -0.0038 7 6 5.8357 4.1997 0.0025 8 6 7.3095 4.3646 0.0030 9 6 8.0907 3.6728 0.9256 10 6 9.4619 3.8299 0.9224 11 6 10.0656 4.6727 0.0049 12 6 9.3017 5.3641 -0.9148 13 6 7.9221 5.2161 -0.9236 14 8 7.1701 5.8941 -1.8266 15 6 7.8105 6.7831 -2.6120 16 1 8.8858 6.8707 -2.5629 17 6 7.0886 7.5851 -3.4826 18 7 5.7788 7.4782 -3.5426 19 14 7.9759 8.8177 -4.5704 20 1 8.9323 8.1013 -5.4519 21 1 6.9853 9.5465 -5.4026 22 1 8.7154 9.7853 -3.7207 23 6 5.0074 5.3227 0.0025 24 6 3.6353 5.1737 0.0016 25 6 3.0713 3.9104 0.0013 26 9 1.7275 3.7712 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9262 0.5552 0.0005 31 1 5.9164 2.0543 -0.0088 32 1 7.6238 3.0146 1.6433 33 1 10.0664 3.2932 1.6386 34 1 11.1388 4.7936 0.0113 35 1 9.7785 6.0204 -1.6278 36 1 5.2737 8.0396 -4.1515 37 1 5.4415 6.3117 0.0030 38 1 2.9995 6.0467 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:53 Heat of formation + Delta-G solvation = -0.747048 kcal Electronic energy + Delta-G solvation = -24861.089479 eV Core-core repulsion = 20972.155443 eV Total energy + Delta-G solvation = -3888.934036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.44594 -39.55403 -38.29516 -37.34197 -36.41206 -34.21857 -32.41764 -31.75789 -30.47089 -29.18817 -27.94521 -26.47406 -25.45778 -23.52320 -22.97743 -21.48541 -21.36448 -19.77512 -18.06531 -17.50985 -17.17644 -16.99936 -15.84596 -15.48806 -15.34973 -15.11258 -15.05651 -14.68314 -14.47227 -14.17069 -13.77593 -13.67091 -13.42846 -13.12393 -12.86752 -12.72197 -12.42195 -12.34454 -11.90141 -11.76656 -11.65831 -11.35761 -10.99044 -10.88346 -10.80199 -10.69451 -10.52164 -9.97246 -9.81735 -9.46938 -8.94127 -8.69165 -8.37911 -7.84815 -7.21707 -6.53922 -4.12785 0.94644 1.40332 2.11168 2.27953 2.59905 2.72686 3.08432 3.08936 3.12019 3.88364 4.01469 4.46967 4.50624 4.75827 4.98182 5.03798 5.10036 5.19689 5.32133 5.32638 5.35608 5.53882 5.56682 5.59169 5.68159 5.73693 5.96225 6.02110 6.19469 6.23278 6.34602 6.42813 6.56260 6.61184 6.77049 6.85244 7.02794 7.07498 7.23712 7.26744 7.33276 7.52544 7.69003 7.89256 8.90952 9.57299 10.62311 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003853 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.510394 B = 7264.691962 C = 8863.004485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.253 6.253 3 N -0.331 5.331 4 C 0.155 3.845 5 C -0.108 4.108 6 C -0.057 4.057 7 C -0.023 4.023 8 C -0.139 4.139 9 C -0.058 4.058 10 C -0.215 4.215 11 C -0.068 4.068 12 C -0.233 4.233 13 C 0.165 3.835 14 O -0.164 6.164 15 C -0.396 4.396 16 H 0.092 0.908 17 C 0.044 3.956 18 N -0.854 5.854 19 Si 0.938 3.062 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.028 4.028 24 C -0.156 4.156 25 C 0.125 3.875 26 F -0.127 7.127 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.272 0.728 37 H 0.140 0.860 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -7.914 7.396 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.266 6.266 3 N -0.078 5.078 4 C -0.055 4.055 5 C -0.110 4.110 6 C -0.077 4.077 7 C -0.024 4.024 8 C -0.140 4.140 9 C -0.076 4.076 10 C -0.234 4.234 11 C -0.086 4.086 12 C -0.252 4.252 13 C 0.110 3.890 14 O -0.066 6.066 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.161 4.161 18 N -0.487 5.487 19 Si 0.763 3.237 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.047 4.047 24 C -0.175 4.175 25 C 0.103 3.897 26 F -0.105 7.105 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.317 -7.638 7.184 10.997 hybrid contribution 0.751 0.119 -0.736 1.058 sum -2.565 -7.519 6.448 10.232 Atomic orbital electron populations 1.22641 0.78935 1.01987 1.01235 1.89774 1.22010 1.21061 1.93771 1.77009 1.13569 1.03021 1.14194 1.24178 0.92005 0.96416 0.92874 1.18181 0.93188 0.88989 1.10664 1.21095 0.91628 0.97517 0.97466 1.18521 0.92549 0.92056 0.99226 1.17719 0.90704 1.05111 1.00489 1.20724 0.93340 0.97109 0.96444 1.20534 0.94388 1.05261 1.03228 1.20843 0.98571 0.94978 0.94194 1.21128 0.93503 1.06571 1.03995 1.19299 0.90037 0.91138 0.88496 1.83966 1.34947 1.46887 1.40819 1.21286 0.92583 1.15081 1.18279 0.89071 1.25252 0.95670 0.97705 0.97504 1.70018 1.05341 1.37794 1.35593 0.85817 0.78731 0.79694 0.79455 1.19499 1.20249 1.19475 1.21329 0.91596 0.99717 0.92011 1.21012 0.96165 0.95539 1.04753 1.17812 0.77020 0.93529 1.01294 1.91513 1.29173 1.96564 1.93273 0.93322 0.93245 0.88967 0.85640 0.84705 0.86714 0.87401 0.87405 0.85325 0.91836 0.84247 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 11.47 101.05 1.16 1.70 16 2 O -0.25 -3.77 11.72 -11.47 -0.13 -3.91 16 3 N -0.33 -5.43 9.38 32.12 0.30 -5.12 16 4 C 0.15 2.30 10.90 -14.78 -0.16 2.14 16 5 C -0.11 -1.73 5.87 -105.02 -0.62 -2.35 16 6 C -0.06 -0.89 9.25 -38.82 -0.36 -1.25 16 7 C -0.02 -0.42 5.27 -104.96 -0.55 -0.98 16 8 C -0.14 -2.65 5.48 -104.72 -0.57 -3.22 16 9 C -0.06 -0.94 9.51 -39.27 -0.37 -1.31 16 10 C -0.22 -3.37 10.03 -39.59 -0.40 -3.77 16 11 C -0.07 -1.14 10.03 -39.55 -0.40 -1.53 16 12 C -0.23 -4.66 9.16 -39.44 -0.36 -5.02 16 13 C 0.17 3.64 6.55 -38.75 -0.25 3.38 16 14 O -0.16 -4.22 8.10 0.37 0.00 -4.21 16 15 C -0.40 -10.26 9.49 30.88 0.29 -9.96 16 16 H 0.09 2.19 5.21 -52.49 -0.27 1.92 16 17 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 18 N -0.85 -23.43 13.67 55.48 0.76 -22.68 16 19 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.03 -0.52 8.77 -39.18 -0.34 -0.86 16 24 C -0.16 -2.71 10.00 -39.62 -0.40 -3.11 16 25 C 0.12 2.17 7.28 -38.92 -0.28 1.88 16 26 F -0.13 -2.26 15.34 2.25 0.03 -2.23 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.14 1.75 8.04 -52.48 -0.42 1.33 16 32 H 0.11 1.53 8.04 -52.49 -0.42 1.11 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 37 H 0.14 2.80 7.67 -52.48 -0.40 2.40 16 38 H 0.14 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.59 343.20 -6.51 -36.10 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.91 Total: 5.61 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.71 Total: -23.22 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 1.06 Total: -27.80 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.13 Total: -8.12 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.59 -6.51 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.353 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds