Wall clock time and date at job start Tue Mar 31 2020 11:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41600 * 113.99798 * 2 1 4 4 C 1.29357 * 120.00082 * 179.97438 * 3 2 1 5 5 C 1.47587 * 120.00329 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.10801 * 180.25818 * 5 4 3 7 7 C 1.39091 * 119.74364 * 180.27117 * 6 5 4 8 8 C 1.48301 * 120.02146 * 179.74814 * 7 6 5 9 9 C 1.39291 * 120.15770 * 309.72832 * 8 7 6 10 10 C 1.38017 * 119.94484 * 180.02562 * 9 8 7 11 11 C 1.38447 * 120.26801 * 359.97033 * 10 9 8 12 12 C 1.38110 * 120.32388 * 0.02991 * 11 10 9 13 13 C 1.38753 * 120.05202 * 359.97438 * 12 11 10 14 14 O 1.35667 * 120.13491 * 180.02562 * 13 12 11 15 15 C 1.34809 * 117.00203 * 354.40782 * 14 13 12 16 16 H 1.08000 * 119.99879 * 5.05677 * 15 14 13 17 17 C 1.38642 * 119.99920 * 185.06423 * 15 14 13 18 18 N 1.31558 * 120.00421 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00146 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46866 * 59.99775 * 19 17 15 21 21 H 1.48497 * 109.47206 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46910 * 300.00196 * 19 17 15 23 23 C 1.39542 * 119.95337 * 359.47163 * 7 6 5 24 24 C 1.38016 * 120.21050 * 0.25795 * 23 7 6 25 25 C 1.38350 * 120.25587 * 0.02562 * 24 23 7 26 26 F 1.35102 * 119.97227 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47298 * 299.99708 * 1 2 3 28 28 H 1.09003 * 109.47788 * 59.99628 * 1 2 3 29 29 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99874 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.12606 * 0.04686 * 6 5 4 32 32 H 1.07996 * 120.02523 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.86708 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.83376 * 179.75293 * 11 10 9 35 35 H 1.08002 * 119.97327 * 179.97438 * 12 11 10 36 36 H 0.97004 * 120.00446 * 179.97438 * 18 17 15 37 37 H 1.08005 * 119.89176 * 180.26883 * 23 7 6 38 38 H 1.08002 * 119.86854 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0048 1.2936 0.0000 4 6 3.2913 1.4289 0.0005 5 6 3.8916 2.7771 0.0011 6 6 5.2780 2.9255 -0.0038 7 6 5.8357 4.1997 0.0025 8 6 7.3095 4.3646 0.0030 9 6 8.0907 3.6728 0.9256 10 6 9.4619 3.8299 0.9224 11 6 10.0656 4.6727 0.0049 12 6 9.3017 5.3641 -0.9148 13 6 7.9221 5.2161 -0.9236 14 8 7.1701 5.8941 -1.8266 15 6 7.8105 6.7831 -2.6120 16 1 8.8858 6.8707 -2.5629 17 6 7.0886 7.5851 -3.4826 18 7 5.7788 7.4782 -3.5426 19 14 7.9759 8.8177 -4.5704 20 1 8.9323 8.1013 -5.4519 21 1 6.9853 9.5465 -5.4026 22 1 8.7154 9.7853 -3.7207 23 6 5.0074 5.3227 0.0025 24 6 3.6353 5.1737 0.0016 25 6 3.0713 3.9104 0.0013 26 9 1.7275 3.7712 0.0000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9262 0.5552 0.0005 31 1 5.9164 2.0543 -0.0088 32 1 7.6238 3.0146 1.6433 33 1 10.0664 3.2932 1.6386 34 1 11.1388 4.7936 0.0113 35 1 9.7785 6.0204 -1.6278 36 1 5.2737 8.0396 -4.1515 37 1 5.4415 6.3117 0.0030 38 1 2.9995 6.0467 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:52 Heat of formation + Delta-G solvation = -16.127454 kcal Electronic energy + Delta-G solvation = -24861.756423 eV Core-core repulsion = 20972.155443 eV Total energy + Delta-G solvation = -3889.600980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84341 -41.03958 -39.71605 -38.47951 -37.93972 -35.41113 -34.24348 -33.17476 -31.75816 -30.64255 -29.36748 -27.45361 -27.27345 -24.82948 -24.34436 -22.91117 -22.79680 -21.10413 -19.75299 -18.79041 -18.66887 -18.37158 -17.19199 -16.85575 -16.65186 -16.41921 -16.23993 -16.17442 -15.99764 -15.48695 -15.39197 -15.09140 -14.80234 -14.46779 -14.36884 -14.18999 -13.65541 -13.49804 -13.38811 -13.15263 -13.01614 -12.76876 -12.47712 -12.34470 -12.24042 -12.16469 -12.02601 -11.14465 -11.11418 -10.94334 -10.75431 -10.09541 -9.67785 -9.26606 -8.75341 -8.41365 -6.07346 -0.37112 0.04946 0.69783 0.83452 1.35757 1.37532 1.46548 1.51338 1.66253 2.19346 2.64397 2.91611 3.18902 3.24581 3.52551 3.56947 3.72531 3.81791 4.17987 4.24562 4.32060 4.35510 4.37748 4.47279 4.55227 4.61055 4.70620 4.75308 4.84773 4.90342 5.02288 5.09617 5.18413 5.20707 5.23314 5.39035 5.49823 5.68589 5.77854 5.83451 5.87728 6.07352 6.29072 6.43328 7.03607 7.83436 8.79075 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003853 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.510394 B = 7264.691962 C = 8863.004485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.260 6.260 3 N -0.360 5.360 4 C 0.156 3.844 5 C -0.102 4.102 6 C -0.041 4.041 7 C -0.038 4.038 8 C -0.142 4.142 9 C -0.054 4.054 10 C -0.192 4.192 11 C -0.068 4.068 12 C -0.250 4.250 13 C 0.127 3.873 14 O -0.209 6.209 15 C -0.412 4.412 16 H 0.099 0.901 17 C -0.014 4.014 18 N -0.908 5.908 19 Si 1.007 2.993 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.046 4.046 24 C -0.161 4.161 25 C 0.112 3.888 26 F -0.132 7.132 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.127 0.873 30 H 0.161 0.839 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.270 0.730 37 H 0.112 0.888 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.183 -10.619 9.020 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 N -0.106 5.106 4 C -0.053 4.053 5 C -0.104 4.104 6 C -0.060 4.060 7 C -0.039 4.039 8 C -0.143 4.143 9 C -0.072 4.072 10 C -0.210 4.210 11 C -0.086 4.086 12 C -0.270 4.270 13 C 0.076 3.924 14 O -0.115 6.115 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.212 4.212 18 N -0.546 5.546 19 Si 0.828 3.172 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.065 4.065 24 C -0.179 4.179 25 C 0.091 3.909 26 F -0.110 7.110 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.178 0.822 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.494 -10.365 8.851 13.711 hybrid contribution 0.254 0.709 -0.968 1.227 sum -1.240 -9.656 7.882 12.527 Atomic orbital electron populations 1.22935 0.77183 1.04240 1.01101 1.89753 1.23885 1.20071 1.93747 1.76940 1.14646 1.04499 1.14471 1.24300 0.92266 0.96497 0.92253 1.18368 0.93294 0.89396 1.09313 1.21345 0.91751 0.97465 0.95479 1.18649 0.92349 0.92847 1.00025 1.18074 0.91474 1.04531 1.00244 1.21205 0.93677 0.96582 0.95747 1.21117 0.94530 1.03140 1.02201 1.21246 1.00147 0.94070 0.93113 1.21262 0.93141 1.07447 1.05106 1.19899 0.91145 0.92053 0.89326 1.83952 1.36045 1.48621 1.42868 1.21697 0.93120 1.15506 1.18546 0.88399 1.26341 0.96389 0.99577 0.98943 1.70167 1.07077 1.39828 1.37508 0.84797 0.77577 0.77265 0.77585 1.18514 1.20104 1.18387 1.21171 0.92342 0.99123 0.93883 1.21043 0.95796 0.96297 1.04813 1.17976 0.77063 0.93972 1.01906 1.91497 1.29507 1.96584 1.93405 0.93202 0.93642 0.85486 0.82197 0.81017 0.82859 0.83028 0.84087 0.86507 0.92143 0.87004 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 11.47 113.37 1.30 2.14 16 2 O -0.26 -7.23 11.72 -38.78 -0.45 -7.69 16 3 N -0.36 -11.22 9.38 -52.28 -0.49 -11.71 16 4 C 0.16 4.27 10.90 87.53 0.95 5.23 16 5 C -0.10 -3.13 5.87 -20.12 -0.12 -3.24 16 6 C -0.04 -1.19 9.25 22.76 0.21 -0.98 16 7 C -0.04 -1.40 5.27 -20.08 -0.11 -1.50 16 8 C -0.14 -5.30 5.48 -19.93 -0.11 -5.41 16 9 C -0.05 -1.54 9.51 22.47 0.21 -1.33 16 10 C -0.19 -5.04 10.03 22.27 0.22 -4.81 16 11 C -0.07 -2.06 10.03 22.29 0.22 -1.84 16 12 C -0.25 -10.00 9.16 22.36 0.20 -9.80 16 13 C 0.13 5.75 6.55 22.81 0.15 5.90 16 14 O -0.21 -11.46 8.10 -21.61 -0.17 -11.64 16 15 C -0.41 -22.59 9.49 67.92 0.64 -21.94 16 16 H 0.10 4.95 5.21 -2.91 -0.02 4.94 16 17 C -0.01 -0.74 5.49 84.83 0.47 -0.27 16 18 N -0.91 -53.24 13.67 21.61 0.30 -52.95 16 19 Si 1.01 41.58 29.55 68.60 2.03 43.61 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 C -0.05 -1.83 8.77 22.53 0.20 -1.64 16 24 C -0.16 -5.90 10.00 22.24 0.22 -5.68 16 25 C 0.11 3.93 7.28 22.70 0.17 4.10 16 26 F -0.13 -4.74 15.34 44.97 0.69 -4.05 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.17 3.69 8.04 -2.91 -0.02 3.67 16 32 H 0.15 3.20 8.04 -2.91 -0.02 3.18 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.12 4.82 5.64 -2.91 -0.02 4.81 16 36 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.11 5.00 7.67 -2.91 -0.02 4.98 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -69.54 343.20 7.83 -61.71 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.10 Total: 23.80 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.84 Total: -41.09 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.19 Total: -64.65 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.63 Total: -19.33 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.69 Total: -4.05 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -69.54 7.83 -61.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.581 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds