Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99926 * 2 1 4 4 N 1.34774 * 120.00094 * 179.97438 * 2 1 3 5 5 C 1.40043 * 119.99963 * 185.24226 * 4 2 1 6 6 C 1.38967 * 119.97932 * 213.60096 * 5 4 2 7 7 C 1.38178 * 120.20549 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.17778 * 359.78056 * 7 6 5 9 9 F 1.35100 * 120.02473 * 180.23943 * 8 7 6 10 10 C 1.39597 * 119.95869 * 0.47271 * 8 7 6 11 11 C 1.48269 * 120.10569 * 179.78645 * 10 8 7 12 12 C 1.39299 * 120.16355 * 244.72436 * 11 10 8 13 13 C 1.38015 * 119.94399 * 180.27324 * 12 11 10 14 14 C 1.38443 * 120.26980 * 359.47251 * 13 12 11 15 15 C 1.38120 * 120.32778 * 0.54688 * 14 13 12 16 16 C 1.38754 * 120.04632 * 359.71134 * 15 14 13 17 17 O 1.35667 * 120.12914 * 180.02562 * 16 15 14 18 18 C 1.34809 * 117.00607 * 6.05742 * 17 16 15 19 19 H 1.08002 * 119.99517 * 5.39715 * 18 17 16 20 20 C 1.38644 * 120.00409 * 185.38948 * 18 17 16 21 21 N 1.31568 * 119.99634 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00363 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47031 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47010 * 120.00037 * 22 20 18 25 25 H 1.48493 * 109.47205 * 240.00309 * 22 20 18 26 26 C 1.38594 * 119.98044 * 33.62094 * 5 4 2 27 27 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47456 * 300.00418 * 1 2 3 29 29 H 1.09004 * 109.47382 * 60.00480 * 1 2 3 30 30 H 0.97001 * 119.99649 * 5.25060 * 4 2 1 31 31 H 1.08003 * 119.89543 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.91058 * 180.02562 * 7 6 5 33 33 H 1.07991 * 120.02418 * 359.97438 * 12 11 10 34 34 H 1.07994 * 119.85989 * 179.74191 * 13 12 11 35 35 H 1.08003 * 119.83551 * 180.28085 * 14 13 12 36 36 H 1.07992 * 119.97726 * 179.72431 * 15 14 13 37 37 H 0.96999 * 119.99460 * 180.02562 * 21 20 18 38 38 H 1.07998 * 120.09046 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5769 -1.1696 0.1113 6 6 4.3237 -2.1423 -0.5425 7 6 5.7013 -2.1494 -0.4359 8 6 6.3451 -1.1858 0.3184 9 9 7.6926 -1.1929 0.4165 10 6 5.6017 -0.2086 0.9824 11 6 6.2884 0.8234 1.7960 12 6 6.0912 0.8739 3.1740 13 6 6.7283 1.8399 3.9262 14 6 7.5722 2.7536 3.3183 15 6 7.7756 2.7140 1.9527 16 6 7.1377 1.7518 1.1830 17 8 7.3367 1.7111 -0.1584 18 6 8.2610 2.5510 -0.6660 19 1 8.8653 3.1530 -0.0035 20 6 8.4360 2.6419 -2.0383 21 7 7.6996 1.9088 -2.8453 22 14 9.7163 3.8062 -2.7416 23 1 10.4060 4.5122 -1.6320 24 1 10.7098 3.0324 -3.5287 25 1 9.0513 4.7991 -3.6231 26 6 4.2129 -0.2023 0.8733 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6989 -2.0055 -0.0760 31 1 3.8257 -2.8950 -1.1357 32 1 6.2770 -2.9073 -0.9464 33 1 5.4365 0.1608 3.6527 34 1 6.5711 1.8804 4.9938 35 1 8.0707 3.5038 3.9143 36 1 8.4317 3.4323 1.4839 37 1 7.8223 1.9721 -3.8054 38 1 3.6333 0.5536 1.3823 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = -76.936271 kcal Electronic energy + Delta-G solvation = -25822.877180 eV Core-core repulsion = 21930.639332 eV Total energy + Delta-G solvation = -3892.237848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.72469 -41.53525 -40.78733 -39.23819 -38.06206 -35.80379 -34.32494 -33.49495 -31.67595 -30.81945 -30.00508 -28.95718 -27.36419 -24.82908 -23.87501 -23.16723 -22.20981 -21.49285 -19.84840 -19.24613 -18.42657 -18.33437 -17.94120 -17.10416 -16.64319 -16.55290 -16.20075 -16.17823 -16.03766 -15.44078 -15.34314 -15.07804 -14.82131 -14.47831 -14.32842 -14.16464 -13.99196 -13.59441 -13.48766 -13.22490 -13.06568 -12.98266 -12.70344 -12.51991 -12.36926 -12.14190 -12.09519 -11.31565 -11.23277 -10.95106 -10.83067 -10.12659 -9.59782 -9.06337 -8.88955 -8.47722 -6.14949 -0.00706 0.19516 0.57192 0.72927 1.30433 1.40050 1.49187 1.56301 2.08290 2.14813 2.62258 2.81464 3.13986 3.44536 3.45676 3.63367 3.84213 3.88733 4.13690 4.15008 4.23427 4.34617 4.50653 4.51497 4.59334 4.66431 4.67539 4.84389 5.00491 5.06901 5.08708 5.12192 5.16701 5.27486 5.30773 5.39223 5.60435 5.63884 5.70330 5.95776 6.00836 6.18788 6.47134 6.95645 7.19160 7.77579 8.74990 Molecular weight = 315.11amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.005056 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.001102 B = 5536.753881 C = 6274.700043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.495 3.505 3 O -0.585 6.585 4 N -0.653 5.653 5 C 0.128 3.872 6 C -0.107 4.107 7 C -0.136 4.136 8 C 0.072 3.928 9 F -0.154 7.154 10 C -0.050 4.050 11 C -0.154 4.154 12 C -0.060 4.060 13 C -0.192 4.192 14 C -0.065 4.065 15 C -0.252 4.252 16 C 0.128 3.872 17 O -0.211 6.211 18 C -0.416 4.416 19 H 0.098 0.902 20 C -0.020 4.020 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.252 1.252 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.099 4.099 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.434 0.566 31 H 0.182 0.818 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.271 0.729 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -9.464 8.019 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.286 3.714 3 O -0.464 6.464 4 N -0.301 5.301 5 C 0.034 3.966 6 C -0.126 4.126 7 C -0.156 4.156 8 C 0.053 3.947 9 F -0.133 7.133 10 C -0.052 4.052 11 C -0.155 4.155 12 C -0.077 4.077 13 C -0.210 4.210 14 C -0.083 4.083 15 C -0.271 4.271 16 C 0.076 3.924 17 O -0.117 6.117 18 C -0.492 4.492 19 H 0.115 0.885 20 C -0.218 4.218 21 N -0.551 5.551 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.192 1.192 25 H -0.193 1.193 26 C -0.119 4.119 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.275 0.725 31 H 0.199 0.801 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.987 -8.897 7.638 17.497 hybrid contribution 1.070 0.497 -0.704 1.374 sum -11.917 -8.400 6.934 16.145 Atomic orbital electron populations 1.21885 0.85868 1.07325 1.06270 1.22190 0.93078 0.82420 0.73721 1.90839 1.72017 1.33601 1.49906 1.43561 1.03403 1.10907 1.72275 1.17685 0.84773 0.97065 0.97126 1.21049 0.91858 1.00462 0.99278 1.21153 0.95855 0.99123 0.99421 1.18230 0.76655 0.98315 1.01543 1.91422 1.30731 1.96246 1.94870 1.18646 0.93351 0.94236 0.98936 1.18130 1.04366 0.98614 0.94383 1.21126 0.98109 0.98274 0.90236 1.21113 1.01399 0.97576 1.00948 1.21273 0.96283 0.98164 0.92611 1.21291 1.07329 1.02497 0.95985 1.19950 0.93639 0.93955 0.84824 1.83964 1.54138 1.56603 1.16970 1.21851 1.13863 1.21434 0.92036 0.88481 1.26568 1.00754 0.99615 0.94871 1.70230 1.40561 1.40201 1.04096 0.84552 0.76346 0.76812 0.78599 1.17520 1.19165 1.19302 1.20931 0.92016 0.99477 0.99486 0.86222 0.87501 0.87901 0.72456 0.80059 0.82362 0.83837 0.82507 0.83280 0.86234 0.92005 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.39 71.24 0.74 -1.07 16 2 C 0.49 12.53 7.67 87.66 0.67 13.20 16 3 O -0.58 -23.36 14.80 -3.04 -0.05 -23.40 16 4 N -0.65 -13.99 5.34 -303.56 -1.62 -15.61 16 5 C 0.13 4.02 6.27 38.09 0.24 4.26 16 6 C -0.11 -2.97 9.95 22.43 0.22 -2.75 16 7 C -0.14 -4.77 10.01 22.26 0.22 -4.54 16 8 C 0.07 3.29 6.95 22.61 0.16 3.44 16 9 F -0.15 -7.89 16.62 44.97 0.75 -7.14 16 10 C -0.05 -2.31 4.95 -20.02 -0.10 -2.41 16 11 C -0.15 -7.39 5.02 -19.93 -0.10 -7.49 16 12 C -0.06 -2.28 9.73 22.47 0.22 -2.06 16 13 C -0.19 -6.49 10.03 22.27 0.22 -6.27 16 14 C -0.07 -2.44 10.03 22.29 0.22 -2.21 16 15 C -0.25 -12.05 9.13 22.37 0.20 -11.85 16 16 C 0.13 7.04 6.44 22.81 0.15 7.18 16 17 O -0.21 -13.61 8.92 -21.61 -0.19 -13.80 16 18 C -0.42 -25.85 9.44 67.92 0.64 -25.21 16 19 H 0.10 5.60 5.30 -2.91 -0.02 5.58 16 20 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 21 N -0.91 -58.88 13.67 21.61 0.30 -58.59 16 22 Si 1.02 45.51 29.55 68.60 2.03 47.53 16 23 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 C -0.10 -4.00 8.34 22.61 0.19 -3.81 16 27 H 0.12 0.37 7.92 -2.39 -0.02 0.35 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.43 4.41 8.66 -92.71 -0.80 3.60 16 31 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.14 4.49 8.06 -2.92 -0.02 4.47 16 34 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.12 5.78 5.72 -2.91 -0.02 5.76 16 37 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.12 5.27 6.43 -2.91 -0.02 5.25 16 Total: -1.00 -92.23 338.98 5.90 -86.33 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.32 Total: 27.01 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 4.37 Total: -42.33 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -1.33 Total: -74.20 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.24 Total: -37.21 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.75 Total: -7.14 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -92.23 5.90 -86.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.396 kcal (2) G-P(sol) polarization free energy of solvation -92.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds